View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21247_high_4 (Length: 431)
Name: NF21247_high_4
Description: NF21247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21247_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 388; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 13 - 412
Target Start/End: Original strand, 54687760 - 54688159
Alignment:
| Q |
13 |
aatattagtatataaccatcaggtttaagagggaagatattgcaacagaaaattgtgaacaagtttcgactttattattgctatatatttacacatataa |
112 |
Q |
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| T |
54687760 |
aatattagtaaataaccatcaggtttaagagggaagatattgcaacagaaaattgtgaacaagtttcgactttattattgctatatatttacacatataa |
54687859 |
T |
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| Q |
113 |
tttccatgtacaagtgtatctatgttgctacaaaattttgatccccataaacttccatttaatggttgagaatattaagaagtgaaactctaattttaat |
212 |
Q |
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| T |
54687860 |
tttccatgtacaagtgtatctatgttgctacaaaattttgatccccataaacttccatttaatggttgagaatattaagaagtgaaactctaattttaat |
54687959 |
T |
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| Q |
213 |
gagacgcctgaatagaaactcaagcccttcttcaaggtcttgaatgcatgactctgctttctctaagtgattttggagatcattgatggcttcaagtttt |
312 |
Q |
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| T |
54687960 |
gagacgcctgaatagaaactcaagcccttcttcaaggtcttgaatgcatgactctgctttctctaagtgactttggagatcattgatggcttcaagtttt |
54688059 |
T |
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| Q |
313 |
ctattcttggtaagtacaaaagactgcaatgctccatccacttgggcaaattcactttcatctgccactagggagcaggaaactcttttgggctgaatta |
412 |
Q |
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| T |
54688060 |
ctattcttggtaagtataaaagactgcaatgctccatccacttgggcaaattcactttcatctgccactagggagcaggaaactcttttgggctgaatta |
54688159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 105 - 410
Target Start/End: Original strand, 54699798 - 54700102
Alignment:
| Q |
105 |
acatataatttccatgtacaagtgtatctatgttgctacaaaattttgatccccataaacttccatttaatggttgagaatattaagaagtgaaactcta |
204 |
Q |
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| T |
54699798 |
acatataatttccatgtacaagtgtatctatatatctacaaaattttc-tccaaataaaagttcaactaatggttgaggatattaagaagtgagactcta |
54699896 |
T |
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| Q |
205 |
attttaatgagacgcctgaatagaaactcaagcccttcttcaaggtcttgaatgcatgactctgctttctctaagtgattttggagatcattgatggctt |
304 |
Q |
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| T |
54699897 |
attttaatgagacgcctaaacaaaaactcaagcccttcttcaatgtcttgaaggcacgactctgttttctccaagtggttttggagatcattgatgcctt |
54699996 |
T |
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| Q |
305 |
caagttttctattcttggtaagtacaaaagactgcaatgctccatccacttgggcaaattcactttcatctgccactagggagcaggaaactcttttggg |
404 |
Q |
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| T |
54699997 |
caacttttctattcttggtaaatacaaaggactgcaatgctacatccacttgggaaaattcactttcatctgtcaatagtgagcaagcaactcttttcgg |
54700096 |
T |
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| Q |
405 |
ctgaat |
410 |
Q |
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|||||| |
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| T |
54700097 |
ctgaat |
54700102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 84 - 401
Target Start/End: Original strand, 54692412 - 54692732
Alignment:
| Q |
84 |
ttattattgctatatatttacacatataatttccatgtacaagtgtatctatgttgctacaaaattttgatccccataaacttccatttaatggttgaga |
183 |
Q |
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|||||||| || || |||||||| |||||||||||||||||||||||||||| || |||||||||||||||| ||||||| | ||| |||||||||||| |
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| T |
54692412 |
ttattattactctacatttacacctataatttccatgtacaagtgtatctatattactacaaaattttgatcaccataaatattcatctaatggttgaga |
54692511 |
T |
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| Q |
184 |
atattaagaagtgaaactctaattttaatgagacgcct-gaatagaaactcaagcccttcttcaaggtcttgaatgcatgactctgctttctctaagtga |
282 |
Q |
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| T |
54692512 |
ctattaagaattgaaactctgattttaatgagacgcctaaaacagaaactcaagcccttcttcgaagtcttgaatacacaactccattttctccaatttg |
54692611 |
T |
|
| Q |
283 |
ttttggagatcattgatggcttcaagttttctattcttggtaagtacaaaagactgcaatgctccatcc--acttgggcaaattcactttcatctgccac |
380 |
Q |
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| T |
54692612 |
ttttggagatcatttacttcttcaaacttgctaatcttgttaaacacaaaggattgcaatgctacatccatacttgagaaaattcactctcttctgccaa |
54692711 |
T |
|
| Q |
381 |
tagggagcaggaaactctttt |
401 |
Q |
| |
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||| ||||| ||||||||||| |
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| T |
54692712 |
tagtgagcaagaaactctttt |
54692732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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