View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21247_low_1 (Length: 524)
Name: NF21247_low_1
Description: NF21247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21247_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 387; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 16 - 508
Target Start/End: Original strand, 25266508 - 25267008
Alignment:
| Q |
16 |
ataatccatttacaaagttcaccttgttaggaaggataaccttataccctacaaattctttaatttccaccaatcactttcttttatgaagtggattcta |
115 |
Q |
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| T |
25266508 |
ataatccatctacaaagttcac-ttgttaggaaggataaccttataccctacaaattctttaatttccaccaaacactttcttttatgaagtggattcta |
25266606 |
T |
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| Q |
116 |
cgaattgtcactaactttatgagaagttcaaaaggcaagatcttaaatttcattctgatttggaagagccactaatttcagaatctgtttggtagtacac |
215 |
Q |
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|||||| | || ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25266607 |
cgaattcttaccaactttatgagaagttcaaaagggaagatcttaaatttcattctgatttggaagagccactaatttcagaatctgtttggtagtacac |
25266706 |
T |
|
| Q |
216 |
aatatcaccagtgtcactaacataatgatctttcttcaaactccttataaattctccaataaggtgaagaggaagaggagctgatttctttggctctttg |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
25266707 |
tatatcaccagtgtcactaacataatgatctttcttcaaactccttataaattctccaataaggtgaaaaggaagaggagctgatttctttggctctttg |
25266806 |
T |
|
| Q |
316 |
taatattctccaaacacaggccttgctgcctcagtctgcaaacaaagcgaagaaaaattcaaactcttgactctaaaaacaaatcactatatatatccat |
415 |
Q |
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| T |
25266807 |
taatattctccaaacacaggccttgctgcctcagtctgcaaacaaagcgaagaaaaattcaaattccagactctaaaaacaaatcac--tatatatccat |
25266904 |
T |
|
| Q |
416 |
t-----------gattcagatagagatactcacagcttcaactaggtgatagtgtggaatttgagggaaaaggtgatgaacgacatgagttccaatgtca |
504 |
Q |
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| T |
25266905 |
tgttttaactaagatagagatagagttactcacagcttcaactagatgatagtgtggaatttgagggaaaaggtgatgaacgacatgagttccaatgtca |
25267004 |
T |
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| Q |
505 |
tggt |
508 |
Q |
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|||| |
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| T |
25267005 |
tggt |
25267008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 5e-20; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 178 - 352
Target Start/End: Complemental strand, 4707739 - 4707565
Alignment:
| Q |
178 |
gaagagccactaatttcagaatctgtttggtagtacacaatatcaccagtgtcactaacataatgatctttcttcaaactccttataaattctccaataa |
277 |
Q |
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||||||||||||| | || |||||||| ||||| |||| ||||||||||||||| ||| |||| ||||| |||| || |||| || |||||||| | |
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| T |
4707739 |
gaagagccactaaggttagggtctgtttgatagtaaacaacatcaccagtgtcactgacaaaatggtcttttttcatgctttttattaaatctccaatga |
4707640 |
T |
|
| Q |
278 |
ggtgaagaggaagaggagctgatttctttggctctttgtaatattctccaaacacaggccttgctgcctcagtct |
352 |
Q |
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| T |
4707639 |
ggtgaaatggtaaaggagatgatttctttggctctttgtaatatcttccaagaactggcttagctgcctcagtct |
4707565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 426 - 506
Target Start/End: Complemental strand, 4706890 - 4706810
Alignment:
| Q |
426 |
agagatactcacagcttcaactaggtgatagtgtggaatttgagggaaaaggtgatgaacgacatgagttccaatgtcatg |
506 |
Q |
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|||||||||||||||||| | || ||| |||||||| |||||||| || | |||||||| ||||||||||||||||||||| |
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| T |
4706890 |
agagatactcacagcttctattaagtggtagtgtgggatttgaggaaataagtgatgaatgacatgagttccaatgtcatg |
4706810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 439 - 506
Target Start/End: Original strand, 30185303 - 30185370
Alignment:
| Q |
439 |
gcttcaactaggtgatagtgtggaatttgagggaaaaggtgatgaacgacatgagttccaatgtcatg |
506 |
Q |
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|||||||| | |||||| || |||||||||||||| || |||||||| |||||||| ||||||||||| |
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| T |
30185303 |
gcttcaaccaagtgataatgaggaatttgagggaagagatgatgaacaacatgagtgccaatgtcatg |
30185370 |
T |
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