View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21247_low_11 (Length: 246)
Name: NF21247_low_11
Description: NF21247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21247_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 204; Significance: 1e-111; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 3232507 - 3232280
Alignment:
| Q |
1 |
caaaaaagcagaaaatgttgctacacttgaatcagaagatttgcatagctggtaccattcattccttccacaaacttttcctcacaaagaaagaatggtt |
100 |
Q |
| |
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||||||| |||||||||||||| | ||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3232507 |
caaaaaatcagaaaatgttgcttctcttcaatcagaagatttgcatagttggtaccattcattccttccacaaacttttcctcacaaagaaagaatggtt |
3232408 |
T |
|
| Q |
101 |
ttctcttaccgcaaagtagcctctggatttgctgtgaagctaacaccagaagaagccaaatctcttcaagaaaaaggtgaaattgtgtcagcaagacctg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
3232407 |
ttctcttaccgcaaagtagcctctggatttgctgtgaagctaacaccagaagaagccaaatctcttcaagagaaaggtgaaattgtgtcagcaagacctg |
3232308 |
T |
|
| Q |
201 |
aaaggacccttgaattacatacaactca |
228 |
Q |
| |
|
|||||||||||||||||||||||||||| |
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|
| T |
3232307 |
aaaggacccttgaattacatacaactca |
3232280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 3227256 - 3227029
Alignment:
| Q |
1 |
caaaaaagcagaaaatgttgctacacttgaatcagaagatttgcatagctggtaccattcattccttccacaaacttttcctcacaaagaaagaatggtt |
100 |
Q |
| |
|
||||||| |||||||||||||| | | | ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3227256 |
caaaaaatcagaaaatgttgcttctcatcaatcagaagatttgcatagttggtaccattcattccttccacaaacttttcctcacaaagaaagaatggtt |
3227157 |
T |
|
| Q |
101 |
ttctcttaccgcaaagtagcctctggatttgctgtgaagctaacaccagaagaagccaaatctcttcaagaaaaaggtgaaattgtgtcagcaagacctg |
200 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
3227156 |
ttctcttaccgcaaagtagcctctggatttgctgtgaagctaacaccagaagaagccaaatctcttcaagagaaaggtgaaattgtgtcagcaagacctg |
3227057 |
T |
|
| Q |
201 |
aaaggacccttgaattacatacaactca |
228 |
Q |
| |
|
||||||||||||||||||| |||||||| |
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|
| T |
3227056 |
aaaggacccttgaattacacacaactca |
3227029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 3222274 - 3222047
Alignment:
| Q |
1 |
caaaaaagcagaaaatgttgctacacttgaatcagaagatttgcatagctggtaccattcattccttccacaaacttttcctcacaaagaaagaatggtt |
100 |
Q |
| |
|
||||||| |||||||||||||| | || |||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| || ||||||||| |
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| T |
3222274 |
caaaaaatcagaaaatgttgcttcctttcaatcagaagatttgcatagctggtaccattcatttcttccacaaaattttcctcacaaggacagaatggtt |
3222175 |
T |
|
| Q |
101 |
ttctcttaccgcaaagtagcctctggatttgctgtgaagctaacaccagaagaagccaaatctcttcaagaaaaaggtgaaattgtgtcagcaagacctg |
200 |
Q |
| |
|
||||| |||||| | |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| || |||| ||| ||||||||||| |
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|
| T |
3222174 |
ttctcataccgccatgtagcctctggatttgctgtgaagctgacaccagaagaagccaaatctcttcaagagaaagatggaattttgttagcaagacctg |
3222075 |
T |
|
| Q |
201 |
aaaggacccttgaattacatacaactca |
228 |
Q |
| |
|
||||||| ||| |||||| |||||||| |
|
|
| T |
3222074 |
aaaggacactttcattacacacaactca |
3222047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 3241306 - 3241079
Alignment:
| Q |
1 |
caaaaaagcagaaaatgttgctacacttgaatcagaagatttgcatagctggtaccattcattccttccacaaacttttcctcacaaagaaagaatggtt |
100 |
Q |
| |
|
||||||| |||||||||||||| | || |||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| || ||||||||| |
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|
| T |
3241306 |
caaaaaatcagaaaatgttgcttcctttcaatcagaagatttgcatagctggtaccattcatttcttccacaaaattttcctcacaaggacagaatggtt |
3241207 |
T |
|
| Q |
101 |
ttctcttaccgcaaagtagcctctggatttgctgtgaagctaacaccagaagaagccaaatctcttcaagaaaaaggtgaaattgtgtcagcaagacctg |
200 |
Q |
| |
|
||||| |||||| | |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| || |||| ||| ||||||||||| |
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|
| T |
3241206 |
ttctcataccgccatgtagcctctggatttgctgtgaagctgacaccagaagaagccaaatctcttcaagagaaagatggaattttgttagcaagacctg |
3241107 |
T |
|
| Q |
201 |
aaaggacccttgaattacatacaactca |
228 |
Q |
| |
|
||||||| ||| |||||| |||||||| |
|
|
| T |
3241106 |
aaaggacactttcattacacacaactca |
3241079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 3177534 - 3177761
Alignment:
| Q |
1 |
caaaaaagcagaaaatgttgctacacttgaatcagaagatttgcatagctggtaccattcattccttccacaaacttttcctcacaaagaaagaatggtt |
100 |
Q |
| |
|
||||||| |||||||||||||| | || |||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| | ||||||||| |
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|
| T |
3177534 |
caaaaaatcagaaaatgttgcttcctttcaatcagaagatttgcatagctggtaccattcatttcttccacaaaattttcctcacaagcacagaatggtt |
3177633 |
T |
|
| Q |
101 |
ttctcttaccgcaaagtagcctctggatttgctgtgaagctaacaccagaagaagccaaatctcttcaagaaaaaggtgaaattgtgtcagcaagacctg |
200 |
Q |
| |
|
||||| |||||| | |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| || ||| ||| ||||||||||| |
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|
| T |
3177634 |
ttctcataccgccatgtagcctctggatttgctgtgaagctgacaccagaagaagccaaatctcttcaagagaaagatgggattttgttagcaagacctg |
3177733 |
T |
|
| Q |
201 |
aaaggacccttgaattacatacaactca |
228 |
Q |
| |
|
||||||| ||| |||||| |||||||| |
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|
| T |
3177734 |
aaaggacactttcattacacacaactca |
3177761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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