View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21247_low_12 (Length: 226)
Name: NF21247_low_12
Description: NF21247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21247_low_12 |
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| [»] chr5 (4 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 155; Significance: 2e-82; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 3232975 - 3232757
Alignment:
| Q |
1 |
tgtattatttactgtatagctgttattagcagttggcaccagaccaaatccatacatattaacacaatatttagcgggcattactatgagatttgcttta |
100 |
Q |
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| T |
3232975 |
tgtattatttactgtatagctgttattagcagttggcaccagaccaaatccatacatattaacacaatatttagcgggcattactatgagatttgcttta |
3232876 |
T |
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| Q |
101 |
tcaaattgccnnnnnnnnnnntcttttattattcctatttagtatttacccttcattgaagactaattagccgtcccaagccagcacaatgcatttcctt |
200 |
Q |
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| T |
3232875 |
tcaaattgccaaaaaaaaaaatcttttatcattcc-------tatttatcattcattgaagactaattagccgtcccaagccagcacaatgcatttcctt |
3232783 |
T |
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| Q |
201 |
gttttcctatgtaataagtaattaaa |
226 |
Q |
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| T |
3232782 |
gttttcctatgtaataagtaattaaa |
3232757 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 143 - 226
Target Start/End: Complemental strand, 3227591 - 3227507
Alignment:
| Q |
143 |
tatttacccttcattgaagactaattagccgtcccaagccagcacaatgcatttccttgttttcctatgtaat-aagtaattaaa |
226 |
Q |
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| T |
3227591 |
tattttccctgcattgaaaactaattagccgtcccaagccagcacaatgcatttccttattttcctatgtagtaaagtaattaaa |
3227507 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 16 - 101
Target Start/End: Complemental strand, 3227734 - 3227647
Alignment:
| Q |
16 |
atagctgttattagcagttggcaccagaccaaatccatacatattaacac--aatatttagcgggcattactatgagatttgctttat |
101 |
Q |
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| T |
3227734 |
atagttgttactagcagttagcaccataccacatccatacaaattaacaccaaatatatagcgggcattactatgagatttgcattat |
3227647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 143 - 209
Target Start/End: Complemental strand, 3222641 - 3222575
Alignment:
| Q |
143 |
tatttacccttcattgaagactaattagccgtcccaagccagcacaatgcatttccttgttttccta |
209 |
Q |
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| T |
3222641 |
tatttactctttattgaaaacgaattagatgtcccaatccagcacactgcatttccttgttttccta |
3222575 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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