View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21247_low_2 (Length: 516)
Name: NF21247_low_2
Description: NF21247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21247_low_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 453; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 20 - 506
Target Start/End: Complemental strand, 49289935 - 49289450
Alignment:
| Q |
20 |
ctcttggtatctcatcaagttcatatactgctggattcacaccaaagtcacaaaatagtgtctttattgtatgactcatgcaacatgaactcttgctgaa |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49289935 |
ctcttggtatctcatcaagttcatatactgctggattcacaccaaagtcacaaaatagtgtctttattgtatgactcatgcaacatgaactcttgctgaa |
49289836 |
T |
|
| Q |
120 |
tatcaccactggcctttctgaaaccatctttgttactctctccattatatatataatgtcaaatgtggaaaatgttggttgatatgtgaggaatgtgtgt |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49289835 |
tatcaccactggcctttctgaaaccatctttgttactctctccattatatata--atgtcaaatgtggaaaatgttggttgatatgtgaggaatgtgtgt |
49289738 |
T |
|
| Q |
220 |
tagttatacttgaagttttggtgtgttgtttgttgagttaataagccaaacgtcgcatgcttatataggggtttttgaacggaagaaattaaggcttgtt |
319 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
49289737 |
tagttatacttgaagttttggtgtgttgtttgttgagttaataagccaaacgtggcatgcttatataggggtttttgaagggaagaaattaaggcttgtt |
49289638 |
T |
|
| Q |
320 |
gttgggaaagaaaagtagaaaagtggagaatcgtcgattagatatttgggtcactttcaaaatcattgaaagtgattcatcaattaagtccacttttact |
419 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
49289637 |
gttggaaaagaaaagtagaaaagtggagaatcgtcgattagatatttgggtcactttcaaaatcattgaaagtgattgatcaattaagtccacttttact |
49289538 |
T |
|
| Q |
420 |
actagctagtacaaacgattatattcttcatccatgcattgattgattgcatgcatgcatacggaacaaatcaagac-aagtcctttg |
506 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
49289537 |
actagctagtacaaacgattatattcttcatccatgcattgattgattgcatgcatgcatacggaacaaatcaagacaaagtcctttg |
49289450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 20 - 506
Target Start/End: Complemental strand, 49296886 - 49296401
Alignment:
| Q |
20 |
ctcttggtatctcatcaagttcatatactgctggattcacaccaaagtcacaaaatagtgtctttattgtatgactcatgcaacatgaactcttgctgaa |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49296886 |
ctcttggtatctcatcaagttcatatactgctggattcacaccaaagtcacaaaatagtgtctttattgtatgactcatgcaacatgaactcttgctgaa |
49296787 |
T |
|
| Q |
120 |
tatcaccactggcctttctgaaaccatctttgttactctctccattatatatataatgtcaaatgtggaaaatgttggttgatatgtgaggaatgtgtgt |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49296786 |
tatcaccactggcctttctgaaaccatctttgttactctctccattatatata--atgtcaaatgtggaaaatgttggttgatatgtgaggaatgtgtgt |
49296689 |
T |
|
| Q |
220 |
tagttatacttgaagttttggtgtgttgtttgttgagttaataagccaaacgtcgcatgcttatataggggtttttgaacggaagaaattaaggcttgtt |
319 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
49296688 |
tagttatacttgaagttttggtgtgttgtttgttgagttaataagccaaacgtggcatgcttatataggggtttttgaagggaagaaattaaggcttgtt |
49296589 |
T |
|
| Q |
320 |
gttgggaaagaaaagtagaaaagtggagaatcgtcgattagatatttgggtcactttcaaaatcattgaaagtgattcatcaattaagtccacttttact |
419 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
49296588 |
gttggaaaagaaaagtagaaaagtggagaatcgtcgattagatgtttgggtcactttcaaaatcattgaaagtgattgatcaattaagtccacttttact |
49296489 |
T |
|
| Q |
420 |
actagctagtacaaacgattatattcttcatccatgcattgattgattgcatgcatgcatacggaacaaatcaagac-aagtcctttg |
506 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
49296488 |
actagctagtacaaacgattatattcttcatccatgcattgattgattgcatgcatgcatacggaacaaatcaagacaaagtcctttg |
49296401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 20 - 409
Target Start/End: Complemental strand, 49303616 - 49303232
Alignment:
| Q |
20 |
ctcttggtatctcatcaagttcatatactgctggattcacaccaaagtcacaaaatagtgtctttattgtatgactcatgcaacatgaactcttgctgaa |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49303616 |
ctcttggtatctcatcaagttcatatactgctggattcacaccaaagtcacaaaatagtgtctttattgtatgactcatgcaacatgaactcttgctgaa |
49303517 |
T |
|
| Q |
120 |
tatcaccactggcctttctgaaaccatctttgttactctctccattatatatataatgtcaaatgtggaaaatgttggttgatatgtgaggaatgtgtgt |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49303516 |
tatcaccactggcctttctgaaaccatctttgttactctctccattata--tataatgtcaaatgtggaaaatgttggttgatatgtgaggaatgtgtgt |
49303419 |
T |
|
| Q |
220 |
tagttatacttgaagttttggtgtgttgtttgttgagttaataagccaaacgtcgcatgcttatataggggtttttgaacggaagaaattaaggcttgtt |
319 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| || |
|
|
| T |
49303418 |
tagttatacttgaagttttggtgtgttgtttgttgagttaataagccaaacgtggcatgcttatataggggtttttgaagggaagaaattaaggc---tt |
49303322 |
T |
|
| Q |
320 |
gttgggaaagaaaagtagaaaagtggagaatcgtcgattagatatttgggtcactttcaaaatcattgaaagtgattcatcaattaagtc |
409 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| |||||||||||| |||||||||||| |
|
|
| T |
49303321 |
gttgggaaagaaaagtagaaaagtggagaatcgtccattagatatttgggtcattttcaaaatcgttgaaagtgattgatcaattaagtc |
49303232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 28 - 166
Target Start/End: Original strand, 6568001 - 6568139
Alignment:
| Q |
28 |
atctcatcaagttcatatactgctggattcacaccaaagtcacaaaatagtgtctttattgtatgactcatgcaacatgaactcttgctgaatatcacca |
127 |
Q |
| |
|
|||||||||||||||| ||| |||||||||| |||||||||| || || || || ||||| |||| ||||||||| |||||||||||||||||||| |
|
|
| T |
6568001 |
atctcatcaagttcatgaacttctggattcactccaaagtcactgaagagggttttgattgtgtgacacatgcaacaactactcttgctgaatatcacca |
6568100 |
T |
|
| Q |
128 |
ctggcctttctgaaaccatctttgttactctctccatta |
166 |
Q |
| |
|
||| ||| ||||| ||| || ||| || |||||||||| |
|
|
| T |
6568101 |
ctgacctctctgatgccaactgtgtcaccctctccatta |
6568139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University