View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21247_low_4 (Length: 443)
Name: NF21247_low_4
Description: NF21247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21247_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 168; Significance: 7e-90; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 168; E-Value: 7e-90
Query Start/End: Original strand, 232 - 426
Target Start/End: Original strand, 42639447 - 42639641
Alignment:
| Q |
232 |
caacaatttatggagttggagattgagatttgaccaccataatgtggaaaagtttgcagtaaatgcaattaaaaacatgacaaatttggagttaagnnnn |
331 |
Q |
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| T |
42639447 |
caacaatttatggagttggagattgagatttgaccaccataatgtggaaaagtttgcagtaaatgcaattaaaaacatgacaaatttggagttaagtttt |
42639546 |
T |
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| Q |
332 |
nnnnnacaagcgaaacattgtagctacatgcaacgttgtttcaattgttgtcacaaacatacgaaccatatgtacaataggcttacgcaaagcat |
426 |
Q |
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| T |
42639547 |
tttttacaagcgaaacattgtagctacatgcaacgttgtttcaattgttgtcacaaacatacgaaccatatgtacaataggcttacgcaaagcat |
42639641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 1 - 166
Target Start/End: Original strand, 42639216 - 42639381
Alignment:
| Q |
1 |
tcctgaaagagcattgaacatgcctggacaacaaaaacaaaccaatccaataaggatgatttgtgaaagaggcgaattgtatcggacaagtgatgaagtt |
100 |
Q |
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| T |
42639216 |
tcctgaaagagcattgaacatgcctggacaacaaaaacaaaccaatccaataaggatgatttgtgaaagaggcgaattgtatcggacaagtgatgaagtt |
42639315 |
T |
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| Q |
101 |
tttgtggtttccggtggttgagtggctgattcttcatattcaacgacaccacccattgggaaattg |
166 |
Q |
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| T |
42639316 |
tttgtggttttcggtggttgagtggctgattcttcatattcaacgacaccacccattgggaaattg |
42639381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 42632072 - 42632216
Alignment:
| Q |
1 |
tcctgaaagagcattgaacatgcctggacaacaaaaacaaaccaatccaataaggatgatttgtgaaagaggcgaattgtatcggacaa---gtgatgaa |
97 |
Q |
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| T |
42632072 |
tcctgaaagagcgttgaacatgcctggacaacaaaaacaaactaagccaataaggattatttgtgaaagaggtgaattgtatctgaaaaggtgtgatgaa |
42632171 |
T |
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| Q |
98 |
gtttttgtggtttccggtggttgagtggctgattcttcatattca |
142 |
Q |
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| T |
42632172 |
gtttttgttgtttctggtgtttgagttcctgattctacattttca |
42632216 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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