View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21247_low_6 (Length: 405)
Name: NF21247_low_6
Description: NF21247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21247_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 343; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 13 - 391
Target Start/End: Original strand, 4650073 - 4650450
Alignment:
| Q |
13 |
attattctttaagcatagagagattaatcaagcaatgtagtaaagaggatcagggagcttgaaagtcctttcaccagtgttggttccaagaatatcactc |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4650073 |
attattctttaagcatagagagattaatcaagcaatgtagtaaagaggatcagggagcttgaaagtcctttcaccagtgttggttccaagaatatcactc |
4650172 |
T |
|
| Q |
113 |
cattggtctccactgtttccaataattctccatccttcttcttcaagcttctttctctcagatgatttgtattgaactgcagttttaccatgatataatt |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4650173 |
cattggtctccactgtttccaataattctccatccttcttcttcaagcttctttctctcagatgatttgtattgaactgcagttttaccatgatataatt |
4650272 |
T |
|
| Q |
213 |
ctgtatccctgcaaccataaatttgaaattaatacaattttttatttatgtgccaacaaaacgtacgtgttaataattgacatgcccctcacacatcacc |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4650273 |
ctgtatccctgcaaccataaatttgaaattaatacaattttttatttatgtgccaacaaaacgtacgtgttaataattgacatgcccctcacacatcacc |
4650372 |
T |
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| Q |
313 |
taatatgtccnnnnnnnnngtagttacctaatatgtccttttcaggttttatatgtcagcaataattcacctagtttat |
391 |
Q |
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|||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
4650373 |
taatatgtcc-ttttttttgtagttacctaatatgtccttttcaggttgtatatgtcagcaataattcacctagtttat |
4650450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 13 - 208
Target Start/End: Complemental strand, 23682186 - 23681988
Alignment:
| Q |
13 |
attattctttaagcatagagagattaatcaagcaatgtagta---aagaggatcagggagcttgaaagtcctttcaccagtgttggttccaagaatatca |
109 |
Q |
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| T |
23682186 |
attattctttaagcatagagagattaatcaagcaatgtagtagtaaagaggatcagggagtttgaaagtcctttcaccagtgttggttccaagaatatca |
23682087 |
T |
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| Q |
110 |
ctccattggtctccactgtttccaataattctccatccttcttcttcaagcttctttctctcagatgatttgtattgaactgcagttttaccatgatat |
208 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| |
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| T |
23682086 |
ctccattggtctccactatttccaataattctccatccttcttcttcaagcttctttctctcagatgatttgtattgaaatgctattttaccatgatat |
23681988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 44 - 209
Target Start/End: Original strand, 4645810 - 4645975
Alignment:
| Q |
44 |
gcaatgtagtaaagaggatcagggagcttgaaagtcctttcaccagtgttggttccaagaatatcactccattggtctccactgtttccaataattctcc |
143 |
Q |
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||||||||||| || |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| ||||||||| |||||| |
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| T |
4645810 |
gcaatgtagtagaggggatcagggagcttgaaagtcctttcaccagtattggttccaagaatatcactccattgatctccaatgtttccaacaattctgt |
4645909 |
T |
|
| Q |
144 |
atccttcttcttcaagcttctttctctcagatgatttgtattgaactgcagttttaccatgatata |
209 |
Q |
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|||||||||| || | |||||||||||||||||||||||| |||||| |||||||||||||||| |
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| T |
4645910 |
atccttcttcctccaatttctttctctcagatgatttgtatgtaactgctgttttaccatgatata |
4645975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 283 - 391
Target Start/End: Complemental strand, 23681528 - 23681421
Alignment:
| Q |
283 |
taataattgacatgcccctcacacatcacctaatatgtccnnnnnnnnngtagttacctaatatgtccttttcaggttttatat-gtcagcaa-taattc |
380 |
Q |
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|||||||||||||| |||||||| ||||||||||||||| |||||||||||||||||||||||||| || |||| |||||||| | |||| |
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| T |
23681528 |
taataattgacatgtccctcaca--tcacctaatatgtcctttttttt-gtagttacctaatatgtccttttcagtttgaatatggtcagcaatttattc |
23681432 |
T |
|
| Q |
381 |
acctagtttat |
391 |
Q |
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||||||||||| |
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| T |
23681431 |
acctagtttat |
23681421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 116 - 237
Target Start/End: Original strand, 41872254 - 41872375
Alignment:
| Q |
116 |
tggtctccactgtttccaataattctccatccttcttcttcaagcttctttctctcagatgatttgtattgaactgcagttttaccatgatataattctg |
215 |
Q |
| |
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|||||||| |||||||||| ||| | |||||||||| || |||||||||||||| || ||||||||| |||||| |||||||||||||||| | || |
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| T |
41872254 |
tggtctcctatgtttccaatgattttgtatccttcttcctccagcttctttctctctgacgatttgtatgtaactgctgttttaccatgatatattgatg |
41872353 |
T |
|
| Q |
216 |
tatccctgcaaccataaatttg |
237 |
Q |
| |
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|||||||| |||| ||||||| |
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| T |
41872354 |
tatccctgagaccacaaatttg |
41872375 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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