View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21247_low_9 (Length: 296)
Name: NF21247_low_9
Description: NF21247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21247_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 154; Significance: 1e-81; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 13 - 281
Target Start/End: Original strand, 23524857 - 23525125
Alignment:
| Q |
13 |
aaaatatgaaaggtccggagttcaaaccccgacc--tagtaaaagnnnnnnnntttcaggatttgaatcctgaaactcaaaactctttcggtgtcccttg |
110 |
Q |
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|||||||||||| | ||||||||||||||||||| ||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
23524857 |
aaaatatgaaagattcggagttcaaaccccgaccactagtaaaagaaaaaaa-tttcaggatttgaatcctaaaactcaaaactctttcggtgtcccttg |
23524955 |
T |
|
| Q |
111 |
ctcaccaatggagttatttatttaggattnnnnnnnnnnnnnnnnnnnntctatggaagatctatatataaaagtagaattgggatttgatacatgcaat |
210 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23524956 |
ctcaccaatggagttatttatttaggattaaaaaaaatataaaaaaaa-tctatggaagatctatatataaaagtagaattgggatttgatacatgcaat |
23525054 |
T |
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| Q |
211 |
gagtgatgtgtttggtaatcattcataaattgaagttgaaaacggtgaataatttactactaagttgataa |
281 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23525055 |
gagtgatgtgtttggtaatcattcataaattgaagttgaaaacggtgaataatttactactaagttgataa |
23525125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 46
Target Start/End: Complemental strand, 8461864 - 8461831
Alignment:
| Q |
13 |
aaaatatgaaaggtccggagttcaaaccccgacc |
46 |
Q |
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|||||||| ||||||||||||||||||||||||| |
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| T |
8461864 |
aaaatatgcaaggtccggagttcaaaccccgacc |
8461831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 46
Target Start/End: Original strand, 39980541 - 39980574
Alignment:
| Q |
13 |
aaaatatgaaaggtccggagttcaaaccccgacc |
46 |
Q |
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|||||||| ||||||||||||||||||||||||| |
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| T |
39980541 |
aaaatatgcaaggtccggagttcaaaccccgacc |
39980574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 46
Target Start/End: Complemental strand, 24079868 - 24079835
Alignment:
| Q |
13 |
aaaatatgaaaggtccggagttcaaaccccgacc |
46 |
Q |
| |
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|||||||| ||||||||||||||||||||||||| |
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|
| T |
24079868 |
aaaatatgcaaggtccggagttcaaaccccgacc |
24079835 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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