View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21248_high_11 (Length: 321)
Name: NF21248_high_11
Description: NF21248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21248_high_11 |
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Alignment Details
Target: chr7 (Bit Score: 291; Significance: 1e-163; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 17 - 315
Target Start/End: Original strand, 25060878 - 25061176
Alignment:
| Q |
17 |
caaatttaggcctcattgctcctaacttatcttatttctcaataaacacaaagatacaaatgatgcgagactatgcatcataaggcagagatttatacta |
116 |
Q |
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| T |
25060878 |
caaatttaggcctcattgcttctaacttatcttatttctcaataaacacaaagatacaaatgatgcgagactatgcatcatgaggcagagatttatacta |
25060977 |
T |
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| Q |
117 |
ggtggttattagttttttactagccacgtttaattttttataagccacgttaaccttaatttatttgtagttttgttcaataaaattgggcttaagatcc |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25060978 |
ggtggttattagttttttactagccacgtttaattttttataagccacgttaaccttaatttatttgtagttttgttcaataaaattgggcttaagatcc |
25061077 |
T |
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| Q |
217 |
atacagatagttattaattttttatagacatttttattttgtataagtcacggttttcatggaaagccagctgcaaccttaatttatctgtagttaatt |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25061078 |
atacagatagttattaattttttatagacatttttattttgtataagtcacggttttcatggaaagccagctgcaaccttaatttatctgtagttaatt |
25061176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 67
Target Start/End: Original strand, 25064702 - 25064738
Alignment:
| Q |
31 |
attgctcctaacttatcttatttctcaataaacacaa |
67 |
Q |
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|||| |||||||||||||||| ||||||||||||||| |
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| T |
25064702 |
attgttcctaacttatcttatctctcaataaacacaa |
25064738 |
T |
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