View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21248_high_13 (Length: 277)

Name: NF21248_high_13
Description: NF21248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21248_high_13
NF21248_high_13
[»] chr5 (14 HSPs)
chr5 (18-210)||(38144528-38144720)
chr5 (27-210)||(28370055-28370238)
chr5 (27-210)||(19512257-19512441)
chr5 (22-204)||(22751018-22751201)
chr5 (22-136)||(23528577-23528690)
chr5 (27-91)||(18407944-18408008)
chr5 (18-82)||(22438738-22438803)
chr5 (27-91)||(23111200-23111264)
chr5 (26-81)||(19236900-19236955)
chr5 (26-79)||(22461158-22461211)
chr5 (26-79)||(22467782-22467835)
chr5 (18-82)||(42961566-42961630)
chr5 (26-81)||(20781744-20781799)
chr5 (26-55)||(17021913-17021942)
[»] scaffold0026 (2 HSPs)
scaffold0026 (26-210)||(111557-111741)
scaffold0026 (18-204)||(11842-12029)
[»] chr8 (15 HSPs)
chr8 (26-210)||(44477494-44477678)
chr8 (26-210)||(44492652-44492836)
chr8 (29-210)||(8727735-8727917)
chr8 (18-204)||(23866491-23866678)
chr8 (18-136)||(17054537-17054654)
chr8 (118-210)||(27940946-27941038)
chr8 (27-91)||(23482053-23482117)
chr8 (27-83)||(18614271-18614327)
chr8 (18-82)||(14056555-14056619)
chr8 (27-83)||(39364919-39364975)
chr8 (27-81)||(29643386-29643440)
chr8 (21-82)||(25111976-25112037)
chr8 (26-81)||(24320670-24320725)
chr8 (27-83)||(21931696-21931752)
chr8 (18-82)||(27940843-27940907)
[»] chr3 (26 HSPs)
chr3 (27-210)||(9534199-9534382)
chr3 (26-210)||(23370505-23370690)
chr3 (27-204)||(14762758-14762936)
chr3 (29-204)||(20247791-20247967)
chr3 (29-206)||(24192830-24193009)
chr3 (29-204)||(38310802-38310978)
chr3 (18-207)||(16801459-16801648)
chr3 (26-136)||(24933828-24933937)
chr3 (18-108)||(41455089-41455178)
chr3 (29-208)||(55499104-55499285)
chr3 (27-88)||(18929239-18929300)
chr3 (27-91)||(17240513-17240577)
chr3 (26-81)||(13302240-13302295)
chr3 (26-81)||(13323787-13323842)
chr3 (26-81)||(12033444-12033499)
chr3 (26-81)||(13312896-13312951)
chr3 (26-81)||(17131732-17131787)
chr3 (26-81)||(51301589-51301644)
chr3 (26-136)||(10389443-10389553)
chr3 (26-136)||(10414532-10414642)
chr3 (26-136)||(10421202-10421312)
chr3 (26-81)||(14865846-14865901)
chr3 (26-61)||(23392819-23392854)
chr3 (29-83)||(16801027-16801081)
chr3 (26-62)||(2247649-2247685)
chr3 (21-77)||(10833303-10833359)
[»] chr2 (17 HSPs)
chr2 (27-210)||(6483589-6483772)
chr2 (27-210)||(6487056-6487239)
chr2 (27-207)||(19661454-19661634)
chr2 (18-207)||(26583702-26583890)
chr2 (27-210)||(23101463-23101647)
chr2 (29-210)||(23089057-23089239)
chr2 (29-210)||(23878879-23879060)
chr2 (26-136)||(5706023-5706133)
chr2 (27-91)||(23265133-23265197)
chr2 (27-91)||(23280201-23280265)
chr2 (27-88)||(21908353-21908414)
chr2 (27-83)||(24661576-24661632)
chr2 (26-81)||(10577-10632)
chr2 (26-81)||(25180929-25180984)
chr2 (26-81)||(26885183-26885237)
chr2 (26-79)||(23168298-23168351)
chr2 (26-79)||(23579555-23579608)
[»] chr7 (28 HSPs)
chr7 (23-207)||(14422858-14423043)
chr7 (27-210)||(16009448-16009631)
chr7 (22-204)||(18873237-18873420)
chr7 (31-204)||(10895795-10895969)
chr7 (27-204)||(15168052-15168230)
chr7 (18-204)||(12709835-12710022)
chr7 (18-204)||(13122906-13123093)
chr7 (18-206)||(13743584-13743772)
chr7 (18-203)||(12590635-12590818)
chr7 (29-207)||(16677167-16677348)
chr7 (29-207)||(17651403-17651584)
chr7 (18-136)||(13007378-13007495)
chr7 (18-82)||(21230951-21231015)
chr7 (27-82)||(11382871-11382926)
chr7 (27-82)||(11389348-11389403)
chr7 (26-82)||(20311051-20311107)
chr7 (27-90)||(13679485-13679548)
chr7 (26-81)||(2971254-2971309)
chr7 (26-81)||(20906461-20906516)
chr7 (27-81)||(11311059-11311113)
chr7 (21-62)||(831628-831669)
chr7 (21-62)||(1196808-1196849)
chr7 (21-62)||(34958578-34958619)
chr7 (27-83)||(46625961-46626017)
chr7 (26-81)||(29181109-29181164)
chr7 (26-79)||(31155396-31155449)
chr7 (18-82)||(148619-148683)
chr7 (26-78)||(16091078-16091130)
[»] scaffold0553 (1 HSPs)
scaffold0553 (26-210)||(10195-10380)
[»] scaffold0544 (1 HSPs)
scaffold0544 (26-210)||(1525-1710)
[»] chr6 (31 HSPs)
chr6 (27-210)||(23839069-23839253)
chr6 (27-207)||(4477731-4477912)
chr6 (26-210)||(10986180-10986365)
chr6 (18-204)||(29614138-29614325)
chr6 (18-207)||(18800311-18800501)
chr6 (27-204)||(23057815-23057993)
chr6 (18-160)||(930087-930229)
chr6 (18-136)||(12168309-12168426)
chr6 (18-136)||(19287218-19287335)
chr6 (18-136)||(19785861-19785978)
chr6 (18-136)||(19878402-19878519)
chr6 (18-136)||(19884178-19884295)
chr6 (29-210)||(21565214-21565396)
chr6 (26-109)||(34646660-34646743)
chr6 (26-109)||(34639986-34640069)
chr6 (26-132)||(25469704-25469808)
chr6 (18-82)||(24512835-24512899)
chr6 (27-79)||(9187498-9187550)
chr6 (27-83)||(25348486-25348542)
chr6 (29-83)||(25598643-25598697)
chr6 (27-83)||(25397172-25397228)
chr6 (26-91)||(31252413-31252478)
chr6 (27-83)||(19471335-19471391)
chr6 (29-83)||(2286769-2286823)
chr6 (26-115)||(11288668-11288758)
chr6 (27-61)||(18659450-18659484)
chr6 (27-61)||(24441673-24441707)
chr6 (26-79)||(15458492-15458545)
chr6 (26-79)||(15465087-15465140)
chr6 (26-54)||(28288509-28288537)
chr6 (21-61)||(29415551-29415591)
[»] chr1 (16 HSPs)
chr1 (27-210)||(20437024-20437208)
chr1 (18-136)||(41111981-41112098)
chr1 (27-91)||(32651563-32651627)
chr1 (27-91)||(18712790-18712854)
chr1 (27-82)||(19663517-19663572)
chr1 (27-83)||(20805320-20805376)
chr1 (27-82)||(11158093-11158148)
chr1 (29-83)||(10811785-10811839)
chr1 (26-81)||(20851132-20851187)
chr1 (26-81)||(20857759-20857814)
chr1 (26-81)||(21706276-21706331)
chr1 (26-81)||(21710818-21710873)
chr1 (27-57)||(24476350-24476380)
chr1 (27-57)||(25091418-25091448)
chr1 (28-61)||(18271338-18271371)
chr1 (28-61)||(18275992-18276025)
[»] scaffold0029 (1 HSPs)
scaffold0029 (18-204)||(111758-111946)
[»] scaffold1773 (1 HSPs)
scaffold1773 (19-204)||(1055-1240)
[»] scaffold0006 (1 HSPs)
scaffold0006 (19-204)||(50056-50241)
[»] scaffold0247 (1 HSPs)
scaffold0247 (18-210)||(11212-11405)
[»] scaffold0924 (1 HSPs)
scaffold0924 (18-204)||(742-930)
[»] scaffold0058 (1 HSPs)
scaffold0058 (18-206)||(167-354)
[»] scaffold0025 (1 HSPs)
scaffold0025 (29-206)||(14398-14577)
[»] scaffold0117 (2 HSPs)
scaffold0117 (18-203)||(8566-8751)
scaffold0117 (18-203)||(1889-2074)
[»] chr4 (16 HSPs)
chr4 (18-203)||(8045824-8046009)
chr4 (18-204)||(11847984-11848177)
chr4 (26-136)||(53483650-53483760)
chr4 (26-82)||(15408139-15408195)
chr4 (27-83)||(8834895-8834951)
chr4 (27-83)||(13888641-13888697)
chr4 (29-81)||(14486661-14486713)
chr4 (27-83)||(15245215-15245271)
chr4 (32-83)||(22724691-22724742)
chr4 (21-62)||(15747551-15747592)
chr4 (27-83)||(15308120-15308176)
chr4 (26-81)||(16146830-16146885)
chr4 (26-81)||(27906266-27906321)
chr4 (27-57)||(15069781-15069811)
chr4 (27-57)||(15076381-15076411)
chr4 (26-83)||(14912081-14912138)
[»] scaffold0154 (1 HSPs)
scaffold0154 (18-207)||(30730-30921)
[»] scaffold0090 (1 HSPs)
scaffold0090 (18-206)||(18043-18233)
[»] scaffold0476 (1 HSPs)
scaffold0476 (29-210)||(3295-3478)
[»] scaffold0077 (1 HSPs)
scaffold0077 (29-210)||(3624-3806)
[»] scaffold0796 (2 HSPs)
scaffold0796 (21-136)||(1727-1841)
scaffold0796 (21-136)||(5750-5864)
[»] scaffold0456 (2 HSPs)
scaffold0456 (22-109)||(904-991)
scaffold0456 (22-109)||(8049-8136)
[»] scaffold0129 (1 HSPs)
scaffold0129 (20-136)||(45268-45384)
[»] scaffold0222 (1 HSPs)
scaffold0222 (27-91)||(16811-16875)
[»] scaffold0107 (1 HSPs)
scaffold0107 (18-82)||(40523-40587)
[»] scaffold0004 (2 HSPs)
scaffold0004 (27-91)||(116887-116951)
scaffold0004 (28-61)||(60441-60474)
[»] scaffold0310 (1 HSPs)
scaffold0310 (18-82)||(17643-17708)
[»] scaffold0461 (1 HSPs)
scaffold0461 (27-91)||(8-72)
[»] scaffold0146 (1 HSPs)
scaffold0146 (27-91)||(13623-13687)
[»] scaffold0020 (1 HSPs)
scaffold0020 (27-91)||(101928-101992)
[»] scaffold0019 (1 HSPs)
scaffold0019 (26-82)||(135473-135529)
[»] scaffold0235 (1 HSPs)
scaffold0235 (18-80)||(22584-22646)
[»] scaffold0124 (2 HSPs)
scaffold0124 (27-82)||(34276-34331)
scaffold0124 (26-83)||(35438-35495)
[»] scaffold0815 (1 HSPs)
scaffold0815 (18-78)||(1453-1513)
[»] scaffold0138 (1 HSPs)
scaffold0138 (27-83)||(12296-12352)
[»] scaffold0317 (1 HSPs)
scaffold0317 (27-90)||(1378-1441)
[»] scaffold0139 (1 HSPs)
scaffold0139 (27-82)||(14997-15052)
[»] scaffold2054 (1 HSPs)
scaffold2054 (18-115)||(680-778)
[»] scaffold0096 (1 HSPs)
scaffold0096 (23-83)||(39503-39563)
[»] scaffold0348 (1 HSPs)
scaffold0348 (26-81)||(9336-9391)
[»] scaffold0127 (1 HSPs)
scaffold0127 (26-81)||(10239-10294)
[»] scaffold0023 (1 HSPs)
scaffold0023 (26-81)||(135438-135493)
[»] scaffold0001 (1 HSPs)
scaffold0001 (26-81)||(493028-493082)
[»] scaffold1318 (1 HSPs)
scaffold1318 (27-81)||(1913-1967)
[»] scaffold0790 (1 HSPs)
scaffold0790 (13-55)||(5480-5522)
[»] scaffold0609 (1 HSPs)
scaffold0609 (26-91)||(5857-5922)
[»] scaffold0335 (1 HSPs)
scaffold0335 (27-83)||(2628-2684)
[»] scaffold0261 (1 HSPs)
scaffold0261 (26-81)||(23569-23624)
[»] scaffold0053 (1 HSPs)
scaffold0053 (26-81)||(79490-79545)
[»] scaffold0481 (1 HSPs)
scaffold0481 (28-73)||(676-721)
[»] scaffold0249 (1 HSPs)
scaffold0249 (26-79)||(13894-13947)
[»] scaffold0600 (1 HSPs)
scaffold0600 (27-83)||(732-788)
[»] scaffold0180 (1 HSPs)
scaffold0180 (27-76)||(11630-11681)
[»] scaffold0034 (1 HSPs)
scaffold0034 (29-81)||(73285-73337)
[»] scaffold0031 (2 HSPs)
scaffold0031 (27-83)||(121902-121958)
scaffold0031 (27-83)||(132778-132834)
[»] scaffold0028 (1 HSPs)
scaffold0028 (27-79)||(69749-69801)


Alignment Details
Target: chr5 (Bit Score: 185; Significance: 1e-100; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 18 - 210
Target Start/End: Original strand, 38144528 - 38144720
Alignment:
Q  18 ctgcaaaactaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcataattttggaaaataaattgaggg 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38144528 ctgcaaaactaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcataattttggaaaataaattgaggg 38144627  T
Q  118 ttagggtttgatgatgattatgaggggtatgggtattgatcatgttaattctattgtaatgtaatgtttagaatgaaaacttaatctatactg 210  Q
    ||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38144628 ttagggtttgatgatgattctgaggggaatgggtattgatcatgttaattctattgtaatgtaatgtttagaatgaaaacttaatctatactg 38144720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 27 - 210
Target Start/End: Original strand, 28370055 - 28370238
Alignment:
Q  27 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcataattttggaaaataaattgagggttagggttt 126  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  28370055 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcatagttttggaaaataaattgagggttagggttt 28370154  T
Q  127 gatgatgattatgaggggtatgggtattgatcatgttaattctattgtaatgtaatgtttagaatgaaaacttaatctatactg 210  Q
    |||||||||| ||||||| |||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||    
T  28370155 gatgatgattttgaggggaatgggtattgatcatgttaattctgttgtaacgtaatgtttagaatgaaaacttaatctatactg 28370238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 27 - 210
Target Start/End: Complemental strand, 19512441 - 19512257
Alignment:
Q  27 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcataatttt-ggaaaataaattgagggttagggtt 125  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| ||||||||||||||||||||    
T  19512441 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcatagtttttggaagataaattgagggttagggtt 19512342  T
Q  126 tgatgatgattatgaggggtatgggtattgatcatgttaattctattgtaatgtaatgtttagaatgaaaacttaatctatactg 210  Q
    ||||||||||| ||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  19512341 tgatgatgattttgaggggaatgggtattgatcatgttaattctattgtaacgtaatgtttagaatgaaaacttaatctatactg 19512257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 22 - 204
Target Start/End: Complemental strand, 22751201 - 22751018
Alignment:
Q  22 aaaactaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcataattttggaaaataaattgagggttag 121  Q
    ||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||    
T  22751201 aaaactaaggtaagggtgagactttctctcgataatcataatctataatttctgaaaattgacctaattgcatagttttggaagataaattgagggttag 22751102  T
Q  122 ggtttgatgatgattatg-aggggtatgggtattgatcatgttaattctattgtaatgtaatgtttagaatgaaaacttaatct 204  Q
    ||||||||||||||| || ||||  ||||||| |||||||||||||||| ||||||| ||||||| ||||||||||||||||||    
T  22751101 ggtttgatgatgattctgaagggaaatgggtaatgatcatgttaattctcttgtaatataatgttcagaatgaaaacttaatct 22751018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 22 - 136
Target Start/End: Complemental strand, 23528690 - 23528577
Alignment:
Q  22 aaaactaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcataattttggaaaataaattgagggttag 121  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |||||||||||||  |||  |||||    
T  23528690 aaaactaaggtaagggtgagactatctctcaataatcataatctataatttctg-aaattgacctaattgaatagttttggaaaataagatgaaagttag 23528592  T
Q  122 ggtttgatgatgatt 136  Q
    |||||||||||||||    
T  23528591 ggtttgatgatgatt 23528577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 27 - 91
Target Start/End: Original strand, 18407944 - 18408008
Alignment:
Q  27 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattg 91  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||    
T  18407944 taaggtaagggtgagactatctctcaataatcataatatataatttctgaaaattgatctaattg 18408008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 22438738 - 22438803
Alignment:
Q  18 ctgcaaaa-ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattg 82  Q
    |||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  22438738 ctgcaaaatctaaggtaagggtgagactatctctcaataatcataatgtataatttctgaaaattg 22438803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 27 - 91
Target Start/End: Original strand, 23111200 - 23111264
Alignment:
Q  27 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattg 91  Q
    ||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |||||||    
T  23111200 taaggtaagggtgagactatctctcaataatcatagtatataatttctgaaaattgatctaattg 23111264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 81
Target Start/End: Complemental strand, 19236955 - 19236900
Alignment:
Q  26 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaatt 81  Q
    |||||||||||||| || ||||| |||||| ||||||| |||||||||||||||||    
T  19236955 ctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaaaatt 19236900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 26 - 79
Target Start/End: Complemental strand, 22461211 - 22461158
Alignment:
Q  26 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaa 79  Q
    |||||||||||||| || ||||| |||||| ||||||| |||||||||||||||    
T  22461211 ctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaaaa 22461158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 26 - 79
Target Start/End: Complemental strand, 22467835 - 22467782
Alignment:
Q  26 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaa 79  Q
    |||||||||||||| || ||||| |||||| ||||||| |||||||||||||||    
T  22467835 ctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaaaa 22467782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 42961630 - 42961566
Alignment:
Q  18 ctgcaaaactaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattg 82  Q
    |||||||||||||||||||||||| ||| |  ||||| || ||||| ||| ||||||||||||||    
T  42961630 ctgcaaaactaaggtaagggtgaggctaaccttcaatgattataatatatgatttctgaaaattg 42961566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 26 - 81
Target Start/End: Complemental strand, 20781799 - 20781744
Alignment:
Q  26 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaatt 81  Q
    |||||||||||||| || ||||| |||||||| ||||| ||| |||||||||||||    
T  20781799 ctaaggtaagggtgggattatctttcaataattataatatatgatttctgaaaatt 20781744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 26 - 55
Target Start/End: Original strand, 17021913 - 17021942
Alignment:
Q  26 ctaaggtaagggtgagactatctctcaata 55  Q
    ||||||||||||||||||||||||||||||    
T  17021913 ctaaggtaagggtgagactatctctcaata 17021942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 169; Significance: 1e-90; HSPs: 2)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 26 - 210
Target Start/End: Complemental strand, 111741 - 111557
Alignment:
Q  26 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcataattttggaaaataaattgagggttagggtt 125  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  111741 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcatagttttggaaaataaattgagggttagggtt 111642  T
Q  126 tgatgatgattatgaggggtatgggtattgatcatgttaattctattgtaatgtaatgtttagaatgaaaacttaatctatactg 210  Q
    ||||||||||| ||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  111641 tgatgatgattctgaggggaatgggtattgatcatgttaattctgttgtaatgtaatgtttagaatgaaaacttaatctatactg 111557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 18 - 204
Target Start/End: Original strand, 11842 - 12029
Alignment:
Q  18 ctgcaaaactaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcataattttggaaaataaattgaggg 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |    
T  11842 ctgcaaaactaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcatagttttggaaaataaattgagag 11941  T
Q  118 ttagggtttgatgatgattatg-aggggtatgggtattgatcatgttaattctattgtaatgtaatgtttagaatgaaaacttaatct 204  Q
    ||||||||||||||||||| || ||||  ||||||| |||||||||||||||| ||||||| |||| || ||||||||||||||||||    
T  11942 ttagggtttgatgatgattctgaagggaaatgggtaatgatcatgttaattctcttgtaatataatcttcagaatgaaaacttaatct 12029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 165; Significance: 3e-88; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 26 - 210
Target Start/End: Complemental strand, 44477678 - 44477494
Alignment:
Q  26 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcataattttggaaaataaattgagggttagggtt 125  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  44477678 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcatagttttggaaaataaattgagggttagggtt 44477579  T
Q  126 tgatgatgattatgaggggtatgggtattgatcatgttaattctattgtaatgtaatgtttagaatgaaaacttaatctatactg 210  Q
    ||||||||||| ||||||| |||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||    
T  44477578 tgatgatgattttgaggggaatgggtattgatcatgttaattctgttgtaacgtaatgtttagaatgaaaacttaatctatactg 44477494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 26 - 210
Target Start/End: Complemental strand, 44492836 - 44492652
Alignment:
Q  26 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcataattttggaaaataaattgagggttagggtt 125  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  44492836 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcatagttttggaaaataaattgagggttagggtt 44492737  T
Q  126 tgatgatgattatgaggggtatgggtattgatcatgttaattctattgtaatgtaatgtttagaatgaaaacttaatctatactg 210  Q
    ||||||||||| ||||||| |||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||    
T  44492736 tgatgatgattttgaggggaatgggtattgatcatgttaattctgttgtaacgtaatgtttagaatgaaaacttaatctatactg 44492652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 29 - 210
Target Start/End: Original strand, 8727735 - 8727917
Alignment:
Q  29 aggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcataatttt-ggaaaataaattgagggttagggtttg 127  Q
    |||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| ||||||||||||||||||||||    
T  8727735 aggtaagggtgagattatccctcaataatcataatctataatttctgaaaattgacctaattgcatagtttttggaagataaattgagggttagggtttg 8727834  T
Q  128 atgatgattatgaggggtatgggtattgatcatgttaattctattgtaatgtaatgtttagaatgaaaacttaatctatactg 210  Q
    | ||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||    
T  8727835 acgatgattctgaggggtatgggtattgatcatgttaattctgttgtaatgtaatgttcagaatgaaaacttaatctatactg 8727917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 18 - 204
Target Start/End: Complemental strand, 23866678 - 23866491
Alignment:
Q  18 ctgcaaaactaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcataattttggaaaataaattgaggg 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| |||||||||||||||| |||||||||||||||||||||    
T  23866678 ctgcaaaactaaggtaagggtgagactatctctcaataatcataatttataattcctgaaa-ttgacctaattgcatagttttggaaaataaattgaggg 23866580  T
Q  118 ttagggtttgatgatgattatg-aggggtatgggtattgatcatgttaattcta-ttgtaatgtaatgtttagaatgaaaacttaatct 204  Q
    |||||||||||||||||||||| || |  ||||||| ||||||||||||||||| ||||||| ||||||| |||||  |||||||||||    
T  23866579 ttagggtttgatgatgattatgaagagaaatgggtaatgatcatgttaattctatttgtaatataatgttcagaatataaacttaatct 23866491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 18 - 136
Target Start/End: Complemental strand, 17054654 - 17054537
Alignment:
Q  18 ctgcaaaactaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcataattttggaaaataaattgaggg 117  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| ||| |||||||||||||  |||  |    
T  17054654 ctgcaaaaccaaggtaagggtgagactatctctcaataatcataatctataattcctg-aaattgacctaattgaatagttttggaaaataagatgaaag 17054556  T
Q  118 ttagggtttgatgatgatt 136  Q
    |||||||||||||||||||    
T  17054555 ttagggtttgatgatgatt 17054537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 118 - 210
Target Start/End: Original strand, 27940946 - 27941038
Alignment:
Q  118 ttagggtttgatgatgattatgaggggtatgggtattgatcatgttaattctattgtaatgtaatgtttagaatgaaaacttaatctatactg 210  Q
    ||||||||||||||||||| ||||||| |||||||||||||||||||||||| ||||||||||||||| |||||||||| |||||||||||||    
T  27940946 ttagggtttgatgatgattctgaggggaatgggtattgatcatgttaattctgttgtaatgtaatgttcagaatgaaaatttaatctatactg 27941038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 27 - 91
Target Start/End: Original strand, 23482053 - 23482117
Alignment:
Q  27 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattg 91  Q
    ||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |||||||    
T  23482053 taaggtaagggtgagactatctctcaataatcatagtatataatttctgaaaattgatctaattg 23482117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 27 - 83
Target Start/End: Complemental strand, 18614327 - 18614271
Alignment:
Q  27 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattga 83  Q
    |||||||||||||||||||||||||||||||||| || |||||||||||||||||||    
T  18614327 taaggtaagggtgagactatctctcaataatcatgatatataatttctgaaaattga 18614271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 14056555 - 14056619
Alignment:
Q  18 ctgcaaaactaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattg 82  Q
    ||||||| |||||||||||||||||||||||||||||||| ||| | | ||| ||||||||||||    
T  14056555 ctgcaaatctaaggtaagggtgagactatctctcaataataatagtatgtaaattctgaaaattg 14056619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 27 - 83
Target Start/End: Complemental strand, 39364975 - 39364919
Alignment:
Q  27 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattga 83  Q
    ||||||||||||||||||||||||||||||| ||| | || ||||||||||||||||    
T  39364975 taaggtaagggtgagactatctctcaataataatagtatagaatttctgaaaattga 39364919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 27 - 81
Target Start/End: Original strand, 29643386 - 29643440
Alignment:
Q  27 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaatt 81  Q
    |||||||||||||||| ||||| |||||||||||||| | |||||||||||||||    
T  29643386 taaggtaagggtgagattatctttcaataatcataatatgtaatttctgaaaatt 29643440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 82
Target Start/End: Complemental strand, 25112037 - 25111976
Alignment:
Q  21 caaaactaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattg 82  Q
    |||| |||||||||||||||||||||||||||||||| ||| | | ||| ||||||||||||    
T  25112037 caaatctaaggtaagggtgagactatctctcaataataatagtatgtaaattctgaaaattg 25111976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 81
Target Start/End: Original strand, 24320670 - 24320725
Alignment:
Q  26 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaatt 81  Q
    |||||||||||||| || ||||| |||||| ||||||| |||||||||||||||||    
T  24320670 ctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaaaatt 24320725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 83
Target Start/End: Complemental strand, 21931752 - 21931696
Alignment:
Q  27 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattga 83  Q
    ||||||||||||||| ||| |||||||| || ||||| ||||| |||||||||||||    
T  21931752 taaggtaagggtgaggctaactctcaatgattataatatataacttctgaaaattga 21931696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 27940843 - 27940907
Alignment:
Q  18 ctgcaaaactaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattg 82  Q
    |||||||||||||||||||||||| ||| |  ||||| || ||||| ||| ||||||||||||||    
T  27940843 ctgcaaaactaaggtaagggtgaggctaaccttcaatgattataatatatgatttctgaaaattg 27940907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 164; Significance: 1e-87; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 27 - 210
Target Start/End: Complemental strand, 9534382 - 9534199
Alignment:
Q  27 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcataattttggaaaataaattgagggttagggttt 126  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  9534382 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcatagttttggaaaataaattgagggttagggttt 9534283  T
Q  127 gatgatgattatgaggggtatgggtattgatcatgttaattctattgtaatgtaatgtttagaatgaaaacttaatctatactg 210  Q
    |||||||||| |||| || |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  9534282 gatgatgattctgagtggaatgggtattgatcatgttaattctgttgtaatgtaatgtttagaatgaaaacttaatctatactg 9534199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 26 - 210
Target Start/End: Original strand, 23370505 - 23370690
Alignment:
Q  26 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcataatttt-ggaaaataaattgagggttagggt 124  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |||||||| ||||||||||    
T  23370505 ctaaggtaagggtgggactatctctcaataatcataatctataatttctgaaaattgacctaattgcatagtttttggaagataaattgtgggttagggt 23370604  T
Q  125 ttgatgatgattatgaggggtatgggtattgatcatgttaattctattgtaatgtaatgtttagaatgaaaacttaatctatactg 210  Q
    |||||||||||| ||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  23370605 ttgatgatgattctgaggggaatgggtattgatcatgttaattctgttgtaatgtaatgtttagaatgaaaacttaatctatactg 23370690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 27 - 204
Target Start/End: Original strand, 14762758 - 14762936
Alignment:
Q  27 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcataattttggaaaataaattgagggttagggttt 126  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||    
T  14762758 taaggtaagggtgagactatctctcgataatcataatctataatttctgaaaattgacctaattgcatagttttggaagataaattgagggttagggttt 14762857  T
Q  127 gatgatgattatg-aggggtatgggtattgatcatgttaattctattgtaatgtaatgtttagaatgaaaacttaatct 204  Q
    |||||||||| || ||||  ||||||| |||||||||||||||| ||||||| ||||||| ||||||||||||||||||    
T  14762858 gatgatgattctgaagggaaatgggtaatgatcatgttaattctcttgtaatataatgttcagaatgaaaacttaatct 14762936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 29 - 204
Target Start/End: Original strand, 20247791 - 20247967
Alignment:
Q  29 aggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcataattttggaaaataaattgagggttagggtttga 128  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||    
T  20247791 aggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcatagttttggaagataaattgagggttagggtttga 20247890  T
Q  129 tgatgattatg-aggggtatgggtattgatcatgttaattctattgtaatgtaatgtttagaatgaaaacttaatct 204  Q
    |||||||| || ||||  ||||||| |||||||||||||| | ||||||| ||||||| ||||||||||||||||||    
T  20247891 tgatgattctgaagggaaatgggtaatgatcatgttaattttcttgtaatataatgttcagaatgaaaacttaatct 20247967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 29 - 206
Target Start/End: Complemental strand, 24193009 - 24192830
Alignment:
Q  29 aggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcata-attttggaaaataaattgagggttagggtttg 127  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||| ||||||||||||||||||||||    
T  24193009 aggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcatagtttttggaagataaattgagggttagggtttg 24192910  T
Q  128 atgatgattatg-aggggtatgggtattgatcatgttaattctattgtaatgtaatgtttagaatgaaaacttaatctat 206  Q
    ||||||||| || ||||  ||||||| |||||||||||||||| ||||||||| ||||| ||||||||||||||||||||    
T  24192909 atgatgattctgaagggaaatgggtaatgatcatgttaattctgttgtaatgtgatgttcagaatgaaaacttaatctat 24192830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 29 - 204
Target Start/End: Original strand, 38310802 - 38310978
Alignment:
Q  29 aggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcataattttggaaaataaattgagggttagggtttga 128  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||    
T  38310802 aggtaagggtgagactatctctcgataatcataatctataatttctgaatattgacctaattgcatagttttggaagataaattgagggttagggtttga 38310901  T
Q  129 tgatgattatg-aggggtatgggtattgatcatgttaattctattgtaatgtaatgtttagaatgaaaacttaatct 204  Q
    |||||||| || ||||  ||||||| |||||||||||||||| ||||||| ||||||| ||||||||||||||||||    
T  38310902 tgatgattctgaagggaaatgggtaatgatcatgttaattctcttgtaatataatgttcagaatgaaaacttaatct 38310978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 18 - 207
Target Start/End: Original strand, 16801459 - 16801648
Alignment:
Q  18 ctgcaaaactaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcataattttggaaaat-aaattgagg 116  Q
    ||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| ||||| ||  ||| ||| || ||||||| |    
T  16801459 ctgcaaaactaaggtaagggtgagactatctctcaataatcat-atatataatttctgaaaattgacctgattgcttagcttttgaagataaaattgaag 16801557  T
Q  117 gttagggtttgatgatgattatgaggggtatgg-gtattgatcatgttaattctattgtaatgtaatgtttagaatgaaaacttaatctata 207  Q
    ||||||| |||||||||||| ||||| | |||| ||| |||||||||||| | |  |||||||| ||||||||||||||  ||||| |||||    
T  16801558 gttaggg-ttgatgatgattttgaggagaatggtgtaatgatcatgttaaatatgctgtaatgtgatgtttagaatgaattcttaacctata 16801648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 26 - 136
Target Start/End: Original strand, 24933828 - 24933937
Alignment:
Q  26 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcataattttggaaaataaattgagggttagggtt 125  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |||||||||||||  |||   ||||||||    
T  24933828 ctaaggtaagggtgagactatctctcaataatcataatctataatttctg-aaattgacctaattgaatagttttggaaaataatatgaaaattagggtt 24933926  T
Q  126 tgatgatgatt 136  Q
    |||||||||||    
T  24933927 tgatgatgatt 24933937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 18 - 108
Target Start/End: Original strand, 41455089 - 41455178
Alignment:
Q  18 ctgcaaaactaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcataattttggaaaata 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| ||||||||||||    
T  41455089 ctgcaaaactaaggtaagggtgagactatctctcaataatcataatctataatttctg-aaattgacctaattgaatagttttggaaaata 41455178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 29 - 208
Target Start/End: Original strand, 55499104 - 55499285
Alignment:
Q  29 aggtaagggtgagactatctctcaataatc-ataatctataatttctg-aaaattgacctaattgcataattttggaaaataaattgagggttagggttt 126  Q
    |||||||||||||||||||||||| ||||  ||||| | ||||||| | ||||||||||||| ||| |||  |||   |  |||||||||||||||||||    
T  55499104 aggtaagggtgagactatctctcattaatagataatatgtaatttcgggaaaattgacctaactgcttaaccttgaggataaaattgagggttagggttt 55499203  T
Q  127 gatgatgattatgaggggtatgggtattgatcatgttaattctattgtaatgtaatgtttagaatgaaaacttaatctatac 208  Q
    |||||||||| ||||||| ||||||| |||||||||||||| | ||||||||| |||||  |||||||| ||||||||||||    
T  55499204 gatgatgattctgaggggaatgggtaatgatcatgttaattatgttgtaatgtgatgttcggaatgaaatcttaatctatac 55499285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 27 - 88
Target Start/End: Complemental strand, 18929300 - 18929239
Alignment:
Q  27 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaa 88  Q
    |||||||||||||||||||||||||||||||||| || ||||||||||||||||||| ||||    
T  18929300 taaggtaagggtgagactatctctcaataatcatgatatataatttctgaaaattgatctaa 18929239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 27 - 91
Target Start/End: Original strand, 17240513 - 17240577
Alignment:
Q  27 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattg 91  Q
    |||||||||||||||||||||||||||||||| ||||  |||||||||||||||||| |||||||    
T  17240513 taaggtaagggtgagactatctctcaataatcttaatacataatttctgaaaattgatctaattg 17240577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 26 - 81
Target Start/End: Original strand, 13302240 - 13302295
Alignment:
Q  26 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaatt 81  Q
    ||||||||||||||||| ||||| |||||||||||||| | |||||||||||||||    
T  13302240 ctaaggtaagggtgagattatctttcaataatcataatatgtaatttctgaaaatt 13302295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 26 - 81
Target Start/End: Original strand, 13323787 - 13323842
Alignment:
Q  26 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaatt 81  Q
    ||||||||||||||||| ||||| |||||||||||||| | |||||||||||||||    
T  13323787 ctaaggtaagggtgagattatctttcaataatcataatatgtaatttctgaaaatt 13323842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 81
Target Start/End: Original strand, 12033444 - 12033499
Alignment:
Q  26 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaatt 81  Q
    |||||||||||||| || ||||| |||||| ||||||| |||||||||||||||||    
T  12033444 ctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaaaatt 12033499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 81
Target Start/End: Original strand, 13312896 - 13312951
Alignment:
Q  26 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaatt 81  Q
    ||||||||||||||||| ||||| |||||||||||||| | |||||| ||||||||    
T  13312896 ctaaggtaagggtgagattatctttcaataatcataatatgtaatttttgaaaatt 13312951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 81
Target Start/End: Complemental strand, 17131787 - 17131732
Alignment:
Q  26 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaatt 81  Q
    |||||||||||||| || ||||| |||||| ||||||| |||||||||||||||||    
T  17131787 ctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaaaatt 17131732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 81
Target Start/End: Complemental strand, 51301644 - 51301589
Alignment:
Q  26 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaatt 81  Q
    ||||||||||||||||| |||||  ||||||||||||| | |||||||||||||||    
T  51301644 ctaaggtaagggtgagattatcttccaataatcataatatgtaatttctgaaaatt 51301589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 26 - 136
Target Start/End: Original strand, 10389443 - 10389553
Alignment:
Q  26 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcataattttggaaaataaattgagggttagggtt 125  Q
    |||||||||||||| || ||||| ||||| || ||||| ||||||||||||||| | | ||||||| ||| ||||  | |||||  |||   ||||||||    
T  10389443 ctaaggtaagggtgggattatctttcaatgattataatgtataatttctgaaaagtaatctaattgaatagtttttaagaataatatgaaaattagggtt 10389542  T
Q  126 tgatgatgatt 136  Q
    |||||||||||    
T  10389543 tgatgatgatt 10389553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 26 - 136
Target Start/End: Original strand, 10414532 - 10414642
Alignment:
Q  26 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcataattttggaaaataaattgagggttagggtt 125  Q
    |||||||||||||| || ||||| ||||| || ||||| ||||||||||||||| | | ||||||| ||| ||||  | |||||  |||   ||||||||    
T  10414532 ctaaggtaagggtgggattatctttcaatgattataatgtataatttctgaaaagtaatctaattgaatagtttttaagaataatatgaaaattagggtt 10414631  T
Q  126 tgatgatgatt 136  Q
    |||||||||||    
T  10414632 tgatgatgatt 10414642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 26 - 136
Target Start/End: Original strand, 10421202 - 10421312
Alignment:
Q  26 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcataattttggaaaataaattgagggttagggtt 125  Q
    |||||||||||||| || ||||| ||||| || ||||| ||||||||||||||| | | ||||||| ||| ||||  | |||||  |||   ||||||||    
T  10421202 ctaaggtaagggtgggattatctttcaatgattataatgtataatttctgaaaagtaatctaattgaatagtttttaagaataatatgaaaattagggtt 10421301  T
Q  126 tgatgatgatt 136  Q
    |||||||||||    
T  10421302 tgatgatgatt 10421312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 26 - 81
Target Start/End: Complemental strand, 14865901 - 14865846
Alignment:
Q  26 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaatt 81  Q
    |||||||||||||| || ||||| |||||| ||||||| | |||||||||||||||    
T  14865901 ctaaggtaagggtgggattatctttcaatagtcataatatgtaatttctgaaaatt 14865846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 26 - 61
Target Start/End: Original strand, 23392819 - 23392854
Alignment:
Q  26 ctaaggtaagggtgagactatctctcaataatcata 61  Q
    |||||||||||||||||||| |||||||||||||||    
T  23392819 ctaaggtaagggtgagactaactctcaataatcata 23392854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 83
Target Start/End: Complemental strand, 16801081 - 16801027
Alignment:
Q  29 aggtaagggtgagactatctctcaataatcataatctataatttctgaaaattga 83  Q
    ||||||||||||||||| |||||||| ||  |||| ||||| |||||||||||||    
T  16801081 aggtaagggtgagactaactctcaatgattgtaatatataacttctgaaaattga 16801027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 62
Target Start/End: Original strand, 2247649 - 2247685
Alignment:
Q  26 ctaaggtaagggtgagactatctctcaataatcataa 62  Q
    |||||||||||||||||||| ||||||||||| ||||    
T  2247649 ctaaggtaagggtgagactaactctcaataattataa 2247685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 77
Target Start/End: Original strand, 10833303 - 10833359
Alignment:
Q  21 caaaactaaggtaagggtgagactatctctcaataatcataatctataatttctgaa 77  Q
    ||||||||||||||||||||||||| |  ||| |||||||| | ||||| |||||||    
T  10833303 caaaactaaggtaagggtgagactaacattcagtaatcatagtgtataaattctgaa 10833359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 164; Significance: 1e-87; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 27 - 210
Target Start/End: Complemental strand, 6483772 - 6483589
Alignment:
Q  27 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcataattttggaaaataaattgagggttagggttt 126  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  6483772 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcatagttttggaaaataaattgagggttagggttt 6483673  T
Q  127 gatgatgattatgaggggtatgggtattgatcatgttaattctattgtaatgtaatgtttagaatgaaaacttaatctatactg 210  Q
    |||||||||| ||||||| |||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||    
T  6483672 gatgatgattttgaggggaatgggtattgatcatgttaattctgttgtaacgtaatgtttagaatgaaaacttaatctatactg 6483589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 27 - 210
Target Start/End: Complemental strand, 6487239 - 6487056
Alignment:
Q  27 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcataattttggaaaataaattgagggttagggttt 126  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  6487239 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcatagttttggaaaataaattgagggttagggttt 6487140  T
Q  127 gatgatgattatgaggggtatgggtattgatcatgttaattctattgtaatgtaatgtttagaatgaaaacttaatctatactg 210  Q
    |||||||||| ||||||| |||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||    
T  6487139 gatgatgattttgaggggaatgggtattgatcatgttaattctgttgtaacgtaatgtttagaatgaaaacttaatctatactg 6487056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 27 - 207
Target Start/End: Original strand, 19661454 - 19661634
Alignment:
Q  27 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcataattttggaaaataaattgagggttagggttt 126  Q
    |||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||    
T  19661454 taaggtaagggtgagactttctctcgataatcataatctataatttctgaaaattgacctaattgcatagttttggaagataaattgagggttagggttt 19661553  T
Q  127 gatgatgattatgaggggtatgggtattgatcatgttaattctattgtaatgtaatgtttagaatgaaaacttaatctata 207  Q
    |||||||||| ||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  19661554 gatgatgattctgaggggaatgggtattgatcatgttaattctgttgtaatgtaatgtttagaatgaaaacttaatctata 19661634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 18 - 207
Target Start/End: Complemental strand, 26583890 - 26583702
Alignment:
Q  18 ctgcaaaactaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcataattttggaaaataaattgaggg 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||    
T  26583890 ctgcaaaactaaggtaagggtgagactatctctcaataatcataatctataatttctgaaa-ttgacctaattgcatagttttggaaaataaattgaggg 26583792  T
Q  118 ttagggtttgatgatgattatgaggggtatgggtattgatcatgttaattctattgtaatgtaatgtttagaatgaaaacttaatctata 207  Q
    |||||| |||||||||||| ||||||| | ||||| |||||||||||| | | |||||| || ||||| ||||||||  | |||||||||    
T  26583791 ttagggcttgatgatgattctgaggggaaagggtaatgatcatgttaaatatgttgtaaagtgatgttcagaatgaattcctaatctata 26583702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 27 - 210
Target Start/End: Original strand, 23101463 - 23101647
Alignment:
Q  27 taaggtaagggtgagactatctctcaataatc-ataatctataatttctgaaaattgacctaattgcataattttggaaaataaattgagggttagggtt 125  Q
    |||||||||||||||||||||||||| ||||  ||||| | ||||||| |||||||||||||||||  |||  |||   |  ||||||||||||||||||    
T  23101463 taaggtaagggtgagactatctctcattaatagataatatgtaatttcggaaaattgacctaattgtttaaccttgaggataaaattgagggttagggtt 23101562  T
Q  126 tgatgatgattatgaggggtatgggtattgatcatgttaattctattgtaatgtaatgtttagaatgaaaacttaatctatactg 210  Q
    ||||||||||| ||||||| ||||||| |||||||||||||| | ||||||||| | |||  |||||||| ||||||||||||||    
T  23101563 tgatgatgattctgaggggaatgggtaatgatcatgttaattatgttgtaatgtgacgttcggaatgaaatcttaatctatactg 23101647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 29 - 210
Target Start/End: Original strand, 23089057 - 23089239
Alignment:
Q  29 aggtaagggtgagactatctctcaataatc-ataatctataatttctgaaaattgacctaattgcataattttggaaaataaattgagggttagggtttg 127  Q
    |||||||||||||||||||||||| ||||  ||||| | ||||||| |||||||||||||||||| |||  |||   |  ||||||||||||||||||||    
T  23089057 aggtaagggtgagactatctctcattaatagataatatttaatttcggaaaattgacctaattgcttaaccttgaggataaaattgagggttagggtttg 23089156  T
Q  128 atgatgattatgaggggtatgggtattgatcatgttaattctattgtaatgtaatgtttagaatgaaaacttaatctatactg 210  Q
    ||||||||| | ||||| ||||||| |||||||||||||| | ||||||||| | |||  |||||||| ||||||||||||||    
T  23089157 atgatgattctaaggggaatgggtaatgatcatgttaattatgttgtaatgtgacgttcggaatgaaatcttaatctatactg 23089239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 29 - 210
Target Start/End: Complemental strand, 23879060 - 23878879
Alignment:
Q  29 aggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcataattttggaaaataaattgagggttagggtttga 128  Q
    |||||||||||||||||||||||| |||| || || |||||||||  ||||||||||||||||| |||  |||   | ||||||||||||||||| |||     
T  23879060 aggtaagggtgagactatctctcattaataattatatataatttcgaaaaattgacctaattgcttaaccttgaggattaaattgagggttaggg-ttgt 23878962  T
Q  129 tgatgattatgaggggtat-gggtattgatcatgttaattctattgtaatgtaatgtttagaatgaaaacttaatctatactg 210  Q
    |||||||| ||||||| || ||||| |||||||||||||| | ||||||||| ||||| ||||||||| ||||||||||||||    
T  23878961 tgatgattctgaggggaatggggtaatgatcatgttaattatgttgtaatgtgatgttcagaatgaaatcttaatctatactg 23878879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 26 - 136
Target Start/End: Original strand, 5706023 - 5706133
Alignment:
Q  26 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcataattttggaaaataaat-tgagggttagggt 124  Q
    ||||||||||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||| ||| |||| |||||  ||| |||   |||||||    
T  5706023 ctaaggtaagggtgagactatctctcattaatcataatctataattcctgaaa-ttgacctaattgaatagtttttgaaaaataatatgaaaattagggt 5706121  T
Q  125 ttgatgatgatt 136  Q
    ||||||||||||    
T  5706122 ttgatgatgatt 5706133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 27 - 91
Target Start/End: Complemental strand, 23265197 - 23265133
Alignment:
Q  27 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattg 91  Q
    ||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |||||||    
T  23265197 taaggtaagggtgagactatctctcaataatcatagtatataatttctgaaaattgatctaattg 23265133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 27 - 91
Target Start/End: Complemental strand, 23280265 - 23280201
Alignment:
Q  27 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattg 91  Q
    ||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |||||||    
T  23280265 taaggtaagggtgagactatctctcaataatcatagtatataatttctgaaaattgatctaattg 23280201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 27 - 88
Target Start/End: Complemental strand, 21908414 - 21908353
Alignment:
Q  27 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaa 88  Q
    |||||||||||||||||||||||||||||||||| || ||||||||||||||||||| ||||    
T  21908414 taaggtaagggtgagactatctctcaataatcatgatatataatttctgaaaattgatctaa 21908353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 27 - 83
Target Start/End: Complemental strand, 24661632 - 24661576
Alignment:
Q  27 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattga 83  Q
    ||||||||||||||| ||| ||||| || |||||||| |||||||||||||||||||    
T  24661632 taaggtaagggtgaggctaactctcgatgatcataatatataatttctgaaaattga 24661576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 81
Target Start/End: Complemental strand, 10632 - 10577
Alignment:
Q  26 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaatt 81  Q
    |||||||||||||| || ||||| |||||| ||||||| |||||||||||||||||    
T  10632 ctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaaaatt 10577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 81
Target Start/End: Original strand, 25180929 - 25180984
Alignment:
Q  26 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaatt 81  Q
    |||||||||||||| || ||||| |||||| ||||||| |||||||||||||||||    
T  25180929 ctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaaaatt 25180984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 26 - 81
Target Start/End: Complemental strand, 26885237 - 26885183
Alignment:
Q  26 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaatt 81  Q
    |||||||||||||| || ||||| ||||||||| |||| |||||||||||||||||    
T  26885237 ctaaggtaagggtgggattatctttcaataatc-taatgtataatttctgaaaatt 26885183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 26 - 79
Target Start/End: Original strand, 23168298 - 23168351
Alignment:
Q  26 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaa 79  Q
    |||||||||||||| || ||||| ||| | |||||||| |||||||||||||||    
T  23168298 ctaaggtaagggtgggattatctttcattgatcataatgtataatttctgaaaa 23168351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 26 - 79
Target Start/End: Original strand, 23579555 - 23579608
Alignment:
Q  26 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaa 79  Q
    |||||||||||||| || ||||| ||| | |||||||| |||||||||||||||    
T  23579555 ctaaggtaagggtgggattatctttcattgatcataatgtataatttctgaaaa 23579608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 158; Significance: 4e-84; HSPs: 28)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 23 - 207
Target Start/End: Complemental strand, 14423043 - 14422858
Alignment:
Q  23 aaactaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcataatttt-ggaaaataaattgagggttag 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| ||||||||||||||||    
T  14423043 aaactaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcatagtttttggaagataaattgagggttag 14422944  T
Q  122 ggtttgatgatgattatgaggggtatgggtattgatcatgttaattctattgtaatgtaatgtttagaatgaaaacttaatctata 207  Q
    ||||||||||||||| ||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  14422943 ggtttgatgatgattctgaggggaatgggtattgatcatgttaattctgttgtaatgtaatgtttagaatgaaaacttaatctata 14422858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 27 - 210
Target Start/End: Complemental strand, 16009631 - 16009448
Alignment:
Q  27 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcataattttggaaaataaattgagggttagggttt 126  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||| |||||||| |||||| |||||    
T  16009631 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcatggttttggaagataaattgtgggttaaggttt 16009532  T
Q  127 gatgatgattatgaggggtatgggtattgatcatgttaattctattgtaatgtaatgtttagaatgaaaacttaatctatactg 210  Q
    |||||||||| ||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  16009531 gatgatgattctgaggggaatgggtattgatcatgttaattctgttgtaatgtaatgtttagaatgaaaacttaatctatactg 16009448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 22 - 204
Target Start/End: Complemental strand, 18873420 - 18873237
Alignment:
Q  22 aaaactaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcataattttggaaaataaattgagggttag 121  Q
    ||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||    
T  18873420 aaaactaaggtaagggtgagactttctctcgataatcataatctataatttctgaaaattgacctaattgcatagttttggaagataaattgagggttag 18873321  T
Q  122 ggtttgatgatgattatg-aggggtatgggtattgatcatgttaattctattgtaatgtaatgtttagaatgaaaacttaatct 204  Q
    ||||||||||||||| || ||||  ||||||| |||||||||||||||| ||||||| ||||||| ||||||||||||||||||    
T  18873320 ggtttgatgatgattctgaagggaaatgggtaatgatcatgttaattctcttgtaatataatgttcagaatgaaaacttaatct 18873237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 31 - 204
Target Start/End: Original strand, 10895795 - 10895969
Alignment:
Q  31 gtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcataatttt-ggaaaataaattgagggttagggtttgat 129  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| |||| |||||||| |||||||||||||||    
T  10895795 gtaagggtgagactatctctcaataatcataatctataatttttgaaaattgacctaattgcatagtttttggaagataaattgtgggttagggtttgat 10895894  T
Q  130 gatgattatgaggggtatgggtattgatcatgttaattctattgtaatgtaatgtttagaatgaaaacttaatct 204  Q
    ||||||| ||||||| |||||||||||||||||||||||| ||||||| ||||||| ||||||||||||||||||    
T  10895895 gatgattctgaggggaatgggtattgatcatgttaattctcttgtaatataatgttcagaatgaaaacttaatct 10895969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 27 - 204
Target Start/End: Complemental strand, 15168230 - 15168052
Alignment:
Q  27 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcataattttggaaaataaattgagggttagggttt 126  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||    
T  15168230 taaggtaagggtgagactatctctcgataatcataatctataatttctgaaaattgacctaattgcatagttttggaagataaattgagggttagggttt 15168131  T
Q  127 gatgatgattatg-aggggtatgggtattgatcatgttaattctattgtaatgtaatgtttagaatgaaaacttaatct 204  Q
    |||||||||| || ||||  ||||||| |||||||||||||||| ||||||| ||||||| ||||||||||||||||||    
T  15168130 gatgatgattctgaagggaaatgggtaatgatcatgttaattctcttgtaatataatgttcagaatgaaaacttaatct 15168052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 18 - 204
Target Start/End: Original strand, 12709835 - 12710022
Alignment:
Q  18 ctgcaaaactaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcataattttggaaaataaattgaggg 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| |||||||||||||||| |||||||||||||||||||||    
T  12709835 ctgcaaaactaaggtaagggtgagactatctctcaataatcataatttataattcctgaaa-ttgacctaattgcatagttttggaaaataaattgaggg 12709933  T
Q  118 ttagggtttgatgatgattatg-aggggtatgggtattgatcatgttaattcta-ttgtaatgtaatgtttagaatgaaaacttaatct 204  Q
    |||||||||||||||||||||| || |  ||||||| ||||||||||||||||| ||||||| ||||||| |||||  |||||||||||    
T  12709934 ttagggtttgatgatgattatgaagagaaatgggtaatgatcatgttaattctatttgtaatataatgttcagaatataaacttaatct 12710022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 18 - 204
Target Start/End: Original strand, 13122906 - 13123093
Alignment:
Q  18 ctgcaaaactaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcataattttggaaaataaattgaggg 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| |||||||||||||||| |||||||||||||||||||||    
T  13122906 ctgcaaaactaaggtaagggtgagactatctctcaataatcataatttataattcctgaaa-ttgacctaattgcatagttttggaaaataaattgaggg 13123004  T
Q  118 ttagggtttgatgatgattatg-aggggtatgggtattgatcatgttaattcta-ttgtaatgtaatgtttagaatgaaaacttaatct 204  Q
    |||||||||||||||||||||| || |  ||||||| ||||||||||||||||| ||||||| ||||||| |||||  |||||||||||    
T  13123005 ttagggtttgatgatgattatgaagagaaatgggtaatgatcatgttaattctatttgtaatataatgttcagaatataaacttaatct 13123093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 18 - 206
Target Start/End: Complemental strand, 13743772 - 13743584
Alignment:
Q  18 ctgcaaaactaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcataattttggaaaataaattgaggg 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| |||||||||||||||| |||||||||||||||||||||    
T  13743772 ctgcaaaactaaggtaagggtgagactatctctcaataatcataatttataattcctgaaa-ttgacctaattgcatagttttggaaaataaattgaggg 13743674  T
Q  118 ttagggtttgatgatgattatg-aggggtatgggtattgatcatgttaattctattgtaatgtaatgtttagaatgaaaacttaatctat 206  Q
    |||||||||||||||||||||| || |  ||||||| |||||||||||||| | ||||| | |  |||| ||| |||| |||||||||||    
T  13743673 ttagggtttgatgatgattatgaagagaaatgggtaatgatcatgttaattttcttgtattatgctgttcagattgaagacttaatctat 13743584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 18 - 203
Target Start/End: Original strand, 12590635 - 12590818
Alignment:
Q  18 ctgcaaaactaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcataattttggaaaataaattgaggg 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |||||||||||||  |||  |    
T  12590635 ctgcaaaactaaggtaagggtgagactatctctcaataatcataatctataatttctg-aaattgacctaattgaatagttttggaaaataatatgaaag 12590733  T
Q  118 ttagggtttgatgatgattatgaggggtatgggtattgatcatgttaattctattgtaatgtaatgtttagaatgaaaacttaatc 203  Q
    ||||||||||||||||||| |||  || ||| |||  ||| |||||| || | ||| ||| ||||||| ||||||||| |||||||    
T  12590734 ttagggtttgatgatgattctga-tggaatgagtaaagatgatgttagttttcttggaatttaatgttaagaatgaaagcttaatc 12590818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 29 - 207
Target Start/End: Complemental strand, 16677348 - 16677167
Alignment:
Q  29 aggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcata-attttggaaaat-aaattgagggttagggttt 126  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||  |||||||| || ||||| |||||||||||||    
T  16677348 aggtaagggtgagactatctctcaataatcataatctataatttctaaaaattgacctaattgcatagtttttggaagataaaattaagggttagggttt 16677249  T
Q  127 gatgatgattatgaggggtatgg-gtattgatcatgttaattctattgtaatgtaatgtttagaatgaaaacttaatctata 207  Q
    |||||||||| ||||| | |||| ||| |||||||||||| | | |||||| || ||||| ||||||||  | |||||||||    
T  16677248 gatgatgattttgaggaggatggtgtaatgatcatgttaaatatgttgtaaagtgatgttcagaatgaattcctaatctata 16677167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 29 - 207
Target Start/End: Complemental strand, 17651584 - 17651403
Alignment:
Q  29 aggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcata-attttggaaaat-aaattgagggttagggttt 126  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||  |||||||| || ||||| |||||||||||||    
T  17651584 aggtaagggtgagactatctctcaataatcataatctataatttctaaaaattgacctaattgcatagtttttggaagataaaattaagggttagggttt 17651485  T
Q  127 gatgatgattatgaggggtatgg-gtattgatcatgttaattctattgtaatgtaatgtttagaatgaaaacttaatctata 207  Q
    |||||||||| ||||| | |||| ||| |||||||||||| | | |||||| || ||||| ||||||||  | |||||||||    
T  17651484 gatgatgattttgaggaggatggtgtaatgatcatgttaaatatgttgtaaagtgatgttcagaatgaattcctaatctata 17651403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 18 - 136
Target Start/End: Complemental strand, 13007495 - 13007378
Alignment:
Q  18 ctgcaaaactaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcataattttggaaaataaattgaggg 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |||||||||||||  |||  |    
T  13007495 ctgcaaaactaaggtaagggtgagactatctctcaataatcataatctataatttctg-aaattgacctaattgaatagttttggaaaataagatgaaag 13007397  T
Q  118 ttagggtttgatgatgatt 136  Q
    |||||||||||||||||||    
T  13007396 ttagggtttgatgatgatt 13007378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 21230951 - 21231015
Alignment:
Q  18 ctgcaaaactaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattg 82  Q
    ||||||| |||||||||||||||||||||||||||||||||||| | ||||||||||||||||||    
T  21230951 ctgcaaatctaaggtaagggtgagactatctctcaataatcatagtatataatttctgaaaattg 21231015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 27 - 82
Target Start/End: Original strand, 11382871 - 11382926
Alignment:
Q  27 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattg 82  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  11382871 taaggtaagggtgagactatctctcaataatcataatatataatttctgaaaattg 11382926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 27 - 82
Target Start/End: Original strand, 11389348 - 11389403
Alignment:
Q  27 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattg 82  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  11389348 taaggtaagggtgagactatctctcaataatcataatatataatttctgaaaattg 11389403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 26 - 82
Target Start/End: Original strand, 20311051 - 20311107
Alignment:
Q  26 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattg 82  Q
    |||||||||||||||||||||||||||||||||||||  ||||||||||||||||||    
T  20311051 ctaaggtaagggtgagactatctctcaataatcataacgtataatttctgaaaattg 20311107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 27 - 90
Target Start/End: Complemental strand, 13679548 - 13679485
Alignment:
Q  27 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaatt 90  Q
    |||||||||||||||||||||| ||||| ||||| || |||||||| |||||||||| ||||||    
T  13679548 taaggtaagggtgagactatctttcaatgatcatgatatataatttttgaaaattgatctaatt 13679485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 81
Target Start/End: Complemental strand, 2971309 - 2971254
Alignment:
Q  26 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaatt 81  Q
    |||||||||||||| || ||||| |||||| ||||||| |||||||||||||||||    
T  2971309 ctaaggtaagggtgggattatctttcaatagtcataatttataatttctgaaaatt 2971254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 81
Target Start/End: Original strand, 20906461 - 20906516
Alignment:
Q  26 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaatt 81  Q
    |||||||||||||| || ||||| |||||| ||||||| |||||||||||||||||    
T  20906461 ctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaaaatt 20906516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 27 - 81
Target Start/End: Complemental strand, 11311113 - 11311059
Alignment:
Q  27 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaatt 81  Q
    ||||||||||||||||||||||||||||||| ||| | || ||||||| ||||||    
T  11311113 taaggtaagggtgagactatctctcaataataatagtgtagaatttctaaaaatt 11311059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 21 - 62
Target Start/End: Original strand, 831628 - 831669
Alignment:
Q  21 caaaactaaggtaagggtgagactatctctcaataatcataa 62  Q
    ||||||||||||||||||||||||| ||||||||||| ||||    
T  831628 caaaactaaggtaagggtgagactaactctcaataattataa 831669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 21 - 62
Target Start/End: Original strand, 1196808 - 1196849
Alignment:
Q  21 caaaactaaggtaagggtgagactatctctcaataatcataa 62  Q
    ||||||||||||||||||||||||| ||||||||||| ||||    
T  1196808 caaaactaaggtaagggtgagactaactctcaataattataa 1196849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 21 - 62
Target Start/End: Complemental strand, 34958619 - 34958578
Alignment:
Q  21 caaaactaaggtaagggtgagactatctctcaataatcataa 62  Q
    ||||||||||||||||||||||||| ||||||||||| ||||    
T  34958619 caaaactaaggtaagggtgagactaactctcaataattataa 34958578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 83
Target Start/End: Complemental strand, 46626017 - 46625961
Alignment:
Q  27 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattga 83  Q
    |||| |||||||||||||| |||||||| || ||||| ||||||||| |||||||||    
T  46626017 taagataagggtgagactaactctcaatgattataatatataatttcggaaaattga 46625961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 26 - 81
Target Start/End: Original strand, 29181109 - 29181164
Alignment:
Q  26 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaatt 81  Q
    |||||||||||||| || ||||| |||||| ||||||| | |||||||||||||||    
T  29181109 ctaaggtaagggtgggattatctttcaatagtcataatatgtaatttctgaaaatt 29181164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 26 - 79
Target Start/End: Complemental strand, 31155449 - 31155396
Alignment:
Q  26 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaa 79  Q
    |||||||||||||| || ||||| ||||| || ||||| |||||||||||||||    
T  31155449 ctaaggtaagggtgggattatctttcaatgattataatatataatttctgaaaa 31155396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 148683 - 148619
Alignment:
Q  18 ctgcaaaactaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattg 82  Q
    |||||||||||||||||||||||| ||| |  ||||| || ||||| |||  |||||||||||||    
T  148683 ctgcaaaactaaggtaagggtgaggctaaccttcaatgattataatatatggtttctgaaaattg 148619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 78
Target Start/End: Complemental strand, 16091130 - 16091078
Alignment:
Q  26 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaa 78  Q
    |||||||||||||| || ||||| |||||| ||||||| | ||||||||||||    
T  16091130 ctaaggtaagggtgggattatctttcaatagtcataatatgtaatttctgaaa 16091078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0553 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: scaffold0553
Description:

Target: scaffold0553; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 26 - 210
Target Start/End: Original strand, 10195 - 10380
Alignment:
Q  26 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcataatttt-ggaaaataaattgagggttagggt 124  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |||||||| ||||||||||    
T  10195 ctaaggtaagggtgggactatctctcaataatcataatctataatttctgaaaattgacctaattgcatagtttttggaagataaattgtgggttagggt 10294  T
Q  125 ttgatgatgattatgaggggtatgggtattgatcatgttaattctattgtaatgtaatgtttagaatgaaaacttaatctatactg 210  Q
    |||||||||||| ||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  10295 ttgatgatgattctgaggggaatgggtattgatcatgttaattctgttgtaatgtaatgtttagaatgaaaacttaatctatactg 10380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0544 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: scaffold0544
Description:

Target: scaffold0544; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 26 - 210
Target Start/End: Original strand, 1525 - 1710
Alignment:
Q  26 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcataatttt-ggaaaataaattgagggttagggt 124  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |||||||| ||||||||||    
T  1525 ctaaggtaagggtgggactatctctcaataatcataatctataatttctgaaaattgacctaattgcatagtttttggaagataaattgtgggttagggt 1624  T
Q  125 ttgatgatgattatgaggggtatgggtattgatcatgttaattctattgtaatgtaatgtttagaatgaaaacttaatctatactg 210  Q
    |||||||||||| ||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  1625 ttgatgatgattctgaggggaatgggtattgatcatgttaattctgttgtaatgtaatgtttagaatgaaaacttaatctatactg 1710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 149; Significance: 9e-79; HSPs: 31)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 27 - 210
Target Start/End: Complemental strand, 23839253 - 23839069
Alignment:
Q  27 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcataat-tttggaaaataaattgagggttagggtt 125  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| ||||||||||||||||||||    
T  23839253 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcatagtgtttggaagataaattgagggttagggtt 23839154  T
Q  126 tgatgatgattatgaggggtatgggtattgatcatgttaattctattgtaatgtaatgtttagaatgaaaacttaatctatactg 210  Q
    ||||||||||| | ||||| |||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||    
T  23839153 tgatgatgattctaaggggaatgggtattgatcatgttaattctgttgtaatgtaatgttcagaatgaaaacttaatctatactg 23839069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 27 - 207
Target Start/End: Complemental strand, 4477912 - 4477731
Alignment:
Q  27 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcataatttt-ggaaaataaattgagggttagggtt 125  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |||||||| |||||||||||    
T  4477912 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcatagtttttggaagataaattgtgggttagggtt 4477813  T
Q  126 tgatgatgattatgaggggtatgggtattgatcatgttaattctattgtaatgtaatgtttagaatgaaaacttaatctata 207  Q
    ||||||||||| ||||||| |||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||    
T  4477812 tgatgatgattctgaggggaatgggtattgatcatgctaattctgttgtaatgtaatgtttagaatgaaaacttaatctata 4477731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 26 - 210
Target Start/End: Original strand, 10986180 - 10986365
Alignment:
Q  26 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcataatttt-ggaaaataaattgagggttagggt 124  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| |||| |||| |||||||||||||||||||    
T  10986180 ctaaggtaagggtgagactatctttcaataatcataatctataatttctaaaaattgacctaattgcatagtttttggaagataaattgagggttagggt 10986279  T
Q  125 ttgatgatgattatgaggggtatgggtattgatcatgttaattctattgtaatgtaatgtttagaatgaaaacttaatctatactg 210  Q
    |||||||||||| ||||||| |||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||    
T  10986280 ttgatgatgattctgaggggaatgggtattgatcatgttaattctgttgtaatgtaatgttcagaatgaaaacttaatctatactg 10986365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 18 - 204
Target Start/End: Original strand, 29614138 - 29614325
Alignment:
Q  18 ctgcaaaactaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcataattttgg-aaaataaattgagg 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||    
T  29614138 ctgcaaaactaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctagttgcataattttggaaaaataaattgagg 29614237  T
Q  117 gttagggtttgatgatgattatg-aggggtatgggtattgatcatgttaattctattgtaatgtaatgtttagaatgaaaacttaatct 204  Q
    ||||||||||||||||||||||| ||||  ||||||| |||||||||||||||| ||||| || |||||||||||||||||||||||||    
T  29614238 gttagggtttgatgatgattatgaagggaaatgggtaatgatcatgttaattctcttgtattg-aatgtttagaatgaaaacttaatct 29614325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 18 - 207
Target Start/End: Complemental strand, 18800501 - 18800311
Alignment:
Q  18 ctgcaaaactaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcataattttggaaaata-aattgagg 116  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| ||||||||    
T  18800501 ctgcaaaactaatgtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcttagttttggaaaatagaattgagg 18800402  T
Q  117 gttagggtttgatgatgattatgaggggtatgggtattgatcatgttaattctattgtaatgtaatgtttagaatgaaaacttaatctata 207  Q
    |||||||||||||||||||| ||  ||| ||| ||| |||||||||||||||| ||||||||| ||||| | ||||||| |||||||||||    
T  18800401 gttagggtttgatgatgattctggagggaatgagtaatgatcatgttaattctgttgtaatgtgatgttcaaaatgaaatcttaatctata 18800311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 27 - 204
Target Start/End: Complemental strand, 23057993 - 23057815
Alignment:
Q  27 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcataattttggaaaataaattgagggttagggttt 126  Q
    ||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| |||||||| |||||||||||||||||||||    
T  23057993 taaggtaagggtgagactatctctcgataatcataatctataattcctgaaaattgacctaattgcatagttttggaagataaattgagggttagggttt 23057894  T
Q  127 gatgatgattatg-aggggtatgggtattgatcatgttaattctattgtaatgtaatgtttagaatgaaaacttaatct 204  Q
    |||||||||| || ||||  ||||||| |||||||||||||||| ||||||| ||||||| ||||||||||||||||||    
T  23057893 gatgatgattctgaagggaaatgggtaatgatcatgttaattctcttgtaatataatgttcagaatgaaaacttaatct 23057815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 18 - 160
Target Start/End: Original strand, 930087 - 930229
Alignment:
Q  18 ctgcaaaactaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcataattttggaaaataaattgaggg 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| ||||| |||||||||||||||    
T  930087 ctgcaaaactaaggtaagggtgagactatctctcaataatcataatctatagtttctgaaaattgacctaattgtatagttttgaaaaataaattgaggg 930186  T
Q  118 ttagggtttgatgatgattatgaggggtatgggtattgatcat 160  Q
    |||||||||||||||| || ||| ||| ||||||| |||||||    
T  930187 ttagggtttgatgatgtttctgaagggaatgggtaatgatcat 930229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 18 - 136
Target Start/End: Complemental strand, 12168426 - 12168309
Alignment:
Q  18 ctgcaaaactaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcataattttggaaaataaattgaggg 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |||||||||||||  |||  |    
T  12168426 ctgcaaaactaaggtaagggtgagactatctctcaataatcataatctataatttctg-aaattgacctaattgaatagttttggaaaataagatgaaag 12168328  T
Q  118 ttagggtttgatgatgatt 136  Q
    |||||||||||||||||||    
T  12168327 ttagggtttgatgatgatt 12168309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 18 - 136
Target Start/End: Complemental strand, 19287335 - 19287218
Alignment:
Q  18 ctgcaaaactaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcataattttggaaaataaattgaggg 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |||||||||||||  |||  |    
T  19287335 ctgcaaaactaaggtaagggtgagactatctctcaataatcataatctataatttctg-aaattgacctaattgaatagttttggaaaataagatgaaag 19287237  T
Q  118 ttagggtttgatgatgatt 136  Q
    |||||||||||||||||||    
T  19287236 ttagggtttgatgatgatt 19287218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 18 - 136
Target Start/End: Original strand, 19785861 - 19785978
Alignment:
Q  18 ctgcaaaactaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcataattttggaaaataaattgaggg 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| ||| |||||||||||||| |||  |    
T  19785861 ctgcaaaactaaggtaagggtgagactatctctcaataatcataatctataatttctg-aaattgacctagttgaatagttttggaaaataaaatgaaag 19785959  T
Q  118 ttagggtttgatgatgatt 136  Q
    |||||||||||||||||||    
T  19785960 ttagggtttgatgatgatt 19785978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 18 - 136
Target Start/End: Complemental strand, 19878519 - 19878402
Alignment:
Q  18 ctgcaaaactaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcataattttggaaaataaattgaggg 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |||||||||||||  |||  |    
T  19878519 ctgcaaaactaaggtaagggtgagactatctctcaataatcataatctataatttctg-aaattgacctaattgaatagttttggaaaataagatgaaag 19878421  T
Q  118 ttagggtttgatgatgatt 136  Q
    |||||||||||||||||||    
T  19878420 ttagggtttgatgatgatt 19878402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 18 - 136
Target Start/End: Complemental strand, 19884295 - 19884178
Alignment:
Q  18 ctgcaaaactaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcataattttggaaaataaattgaggg 117  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |||||||||||||  |||  |    
T  19884295 ctgcaaaactaaggttagggtgagactatctctcaataatcataatctataatttctg-aaattgacctaattgaatagttttggaaaataagatgaaag 19884197  T
Q  118 ttagggtttgatgatgatt 136  Q
    |||||||||||||||||||    
T  19884196 ttagggtttgatgatgatt 19884178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 29 - 210
Target Start/End: Original strand, 21565214 - 21565396
Alignment:
Q  29 aggtaagggtgagactatctctcaataatc-ataatctataatttctgaaaattgacctaattgcataattttggaaaataaattgagggttagggtttg 127  Q
    |||||||||||||||||||||||| ||||  ||||| | ||||||| |||||||||||||||||| |||  |||   |  ||||||||||||||||||||    
T  21565214 aggtaagggtgagactatctctcattaatagataatatttaatttcggaaaattgacctaattgcttaaccttgaggataaaattgagggttagggtttg 21565313  T
Q  128 atgatgattatgaggggtatgggtattgatcatgttaattctattgtaatgtaatgtttagaatgaaaacttaatctatactg 210  Q
    ||||||||| | ||||| ||||||| |||||||||||||| | ||||||||| | |||  |||||||| ||||||||||||||    
T  21565314 atgatgattctaaggggaatgggtaatgatcatgttaattatgttgtaatgtgacgttcggaatgaaatcttaatctatactg 21565396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 26 - 109
Target Start/End: Original strand, 34646660 - 34646743
Alignment:
Q  26 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcataattttggaaaataa 109  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||    
T  34646660 ctaaggtaagggtgagactatctctcaataatcttaatctataatttctgaaaattgacctaattgaataattttggaaaataa 34646743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 26 - 109
Target Start/End: Original strand, 34639986 - 34640069
Alignment:
Q  26 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcataattttggaaaataa 109  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| |||||||||||||    
T  34639986 ctaaggtaagggtgagactatctctcaataatcttaatctataatttctgaaaattgacctaattgaatagttttggaaaataa 34640069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 26 - 132
Target Start/End: Original strand, 25469704 - 25469808
Alignment:
Q  26 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcataattttggaaaataaattgagggttagggtt 125  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| ||  |||||||||||||  |||   ||||||||    
T  25469704 ctaaggtaagggtgagactatctctcaataatcataatctataa-ttctg-aaattgacctaattgaatggttttggaaaataatatgaaaattagggtt 25469801  T
Q  126 tgatgat 132  Q
    |||||||    
T  25469802 tgatgat 25469808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 24512835 - 24512899
Alignment:
Q  18 ctgcaaaactaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattg 82  Q
    ||||||| ||||||| |||||||||||||||||||||||||||| | ||||||||||||||||||    
T  24512835 ctgcaaatctaaggtgagggtgagactatctctcaataatcatagtatataatttctgaaaattg 24512899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 27 - 79
Target Start/End: Complemental strand, 9187550 - 9187498
Alignment:
Q  27 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaa 79  Q
    |||||||||||||||||||||||||||||||| ||||  ||||||||||||||    
T  9187550 taaggtaagggtgagactatctctcaataatcttaatacataatttctgaaaa 9187498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 27 - 83
Target Start/End: Complemental strand, 25348542 - 25348486
Alignment:
Q  27 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattga 83  Q
    ||||||||||||||||||||||||||||||| ||| | || ||||||||||||||||    
T  25348542 taaggtaagggtgagactatctctcaataataatagtatagaatttctgaaaattga 25348486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 29 - 83
Target Start/End: Complemental strand, 25598697 - 25598643
Alignment:
Q  29 aggtaagggtgagactatctctcaataatcataatctataatttctgaaaattga 83  Q
    ||||||||||||||||| |||||||| |||||||| |||| ||||||||||||||    
T  25598697 aggtaagggtgagactaactctcaatgatcataatatatattttctgaaaattga 25598643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 27 - 83
Target Start/End: Complemental strand, 25397228 - 25397172
Alignment:
Q  27 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattga 83  Q
    ||||||||||||||| ||| ||||| || |||||||| |||||||||||||||||||    
T  25397228 taaggtaagggtgaggctaactctcgatgatcataatatataatttctgaaaattga 25397172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 26 - 91
Target Start/End: Complemental strand, 31252478 - 31252413
Alignment:
Q  26 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattg 91  Q
    ||||||||||||||||| ||||| | ||| || ||||| ||||||||||||||||| | |||||||    
T  31252478 ctaaggtaagggtgagattatcttttaatgattataatatataatttctgaaaattaatctaattg 31252413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 83
Target Start/End: Original strand, 19471335 - 19471391
Alignment:
Q  27 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattga 83  Q
    ||||||||||||||| ||| ||||| || |||||||| ||||||||||| |||||||    
T  19471335 taaggtaagggtgaggctacctctcgatgatcataatatataatttctggaaattga 19471391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 83
Target Start/End: Original strand, 2286769 - 2286823
Alignment:
Q  29 aggtaagggtgagactatctctcaataatcataatctataatttctgaaaattga 83  Q
    ||||||||||||||||| |||||||| ||  |||| ||||| |||||||||||||    
T  2286769 aggtaagggtgagactaactctcaatgattgtaatatataacttctgaaaattga 2286823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 115
Target Start/End: Original strand, 11288668 - 11288758
Alignment:
Q  26 ctaaggtaagggtgagactatctctcaataatcataatctataatttctg-aaaattgacctaattgcataattttggaaaataaattgag 115  Q
    |||||||||||||| || ||||| ||||| ||| |||| ||||||||||| |||||| ||||||  | ||| || | ||||||||||||||    
T  11288668 ctaaggtaagggtgggattatctttcaatgatcttaatatataatttctgaaaaattaacctaaaagaatagttcttgaaaataaattgag 11288758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 61
Target Start/End: Complemental strand, 18659484 - 18659450
Alignment:
Q  27 taaggtaagggtgagactatctctcaataatcata 61  Q
    ||||||||||||||||||| |||||||||||||||    
T  18659484 taaggtaagggtgagactaactctcaataatcata 18659450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 61
Target Start/End: Complemental strand, 24441707 - 24441673
Alignment:
Q  27 taaggtaagggtgagactatctctcaataatcata 61  Q
    ||||||||||||||||||| |||||||||||||||    
T  24441707 taaggtaagggtgagactaactctcaataatcata 24441673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 26 - 79
Target Start/End: Complemental strand, 15458545 - 15458492
Alignment:
Q  26 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaa 79  Q
    |||||||||||||| || ||||| ||||| || ||||| |||||||||||||||    
T  15458545 ctaaggtaagggtgggattatctttcaatgattataatatataatttctgaaaa 15458492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 26 - 79
Target Start/End: Complemental strand, 15465140 - 15465087
Alignment:
Q  26 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaa 79  Q
    |||||||||||||| || ||||| ||||| || ||||| |||||||||||||||    
T  15465140 ctaaggtaagggtgggattatctttcaatgattataatatataatttctgaaaa 15465087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 54
Target Start/End: Original strand, 28288509 - 28288537
Alignment:
Q  26 ctaaggtaagggtgagactatctctcaat 54  Q
    |||||||||||||||||||||||||||||    
T  28288509 ctaaggtaagggtgagactatctctcaat 28288537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 61
Target Start/End: Original strand, 29415551 - 29415591
Alignment:
Q  21 caaaactaaggtaagggtgagactatctctcaataatcata 61  Q
    ||||||||||||||| ||||| ||| |||||||||||||||    
T  29415551 caaaactaaggtaagagtgaggctaactctcaataatcata 29415591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 149; Significance: 9e-79; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 27 - 210
Target Start/End: Original strand, 20437024 - 20437208
Alignment:
Q  27 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcataatttt-ggaaaataaattgagggttagggtt 125  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| ||||||||||||||||||||    
T  20437024 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcatagtttttggaagataaattgagggttagggtt 20437123  T
Q  126 tgatgatgattatgaggggtatgggtattgatcatgttaattctattgtaatgtaatgtttagaatgaaaacttaatctatactg 210  Q
    ||||||||||| ||||||| |||||||||||||||||||||| | ||||||||||||||| ||||||||||||||||||||||||    
T  20437124 tgatgatgattctgaggggaatgggtattgatcatgttaattatgttgtaatgtaatgttcagaatgaaaacttaatctatactg 20437208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 18 - 136
Target Start/End: Complemental strand, 41112098 - 41111981
Alignment:
Q  18 ctgcaaaactaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcataattttggaaaataaattgaggg 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| ||||| |||||||  |||  |    
T  41112098 ctgcaaaactaaggtaagggtgagactatctctcaataatcataatctataatttctg-aaattgacctaattgaatagttttgaaaaataagatgaaag 41112000  T
Q  118 ttagggtttgatgatgatt 136  Q
    |||||||||||||||||||    
T  41111999 ttagggtttgatgatgatt 41111981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 27 - 91
Target Start/End: Complemental strand, 32651627 - 32651563
Alignment:
Q  27 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattg 91  Q
    ||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |||||||    
T  32651627 taaggtaagggtgagactatctctcaataatcatagtatataatttctgaaaattgatctaattg 32651563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 27 - 91
Target Start/End: Complemental strand, 18712854 - 18712790
Alignment:
Q  27 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattg 91  Q
    ||||||| ||||||||||||||||||||||||||| | ||||||||||||||||||| |||||||    
T  18712854 taaggtatgggtgagactatctctcaataatcatagtatataatttctgaaaattgatctaattg 18712790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 27 - 82
Target Start/End: Original strand, 19663517 - 19663572
Alignment:
Q  27 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattg 82  Q
    ||||||||||||||||||||||||| ||||||||| | ||||||||||||||||||    
T  19663517 taaggtaagggtgagactatctctcgataatcatagtatataatttctgaaaattg 19663572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 27 - 83
Target Start/End: Complemental strand, 20805376 - 20805320
Alignment:
Q  27 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattga 83  Q
    ||||||||||||||| ||| |||||||| |||||||| |||||||||||||||||||    
T  20805376 taaggtaagggtgaggctaactctcaatgatcataatatataatttctgaaaattga 20805320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 27 - 82
Target Start/End: Complemental strand, 11158148 - 11158093
Alignment:
Q  27 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattg 82  Q
    ||||||||||||||||||| |||||||| ||| |||| ||||||||||||||||||    
T  11158148 taaggtaagggtgagactaactctcaatgatcttaatatataatttctgaaaattg 11158093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 29 - 83
Target Start/End: Original strand, 10811785 - 10811839
Alignment:
Q  29 aggtaagggtgagactatctctcaataatcataatctataatttctgaaaattga 83  Q
    ||||||||||||||||||||||||||||| ||| | || ||||||||||||||||    
T  10811785 aggtaagggtgagactatctctcaataataatagtgtagaatttctgaaaattga 10811839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 81
Target Start/End: Original strand, 20851132 - 20851187
Alignment:
Q  26 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaatt 81  Q
    |||||||||||||| || ||||| |||||| ||||||| |||||||||||||||||    
T  20851132 ctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaaaatt 20851187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 81
Target Start/End: Original strand, 20857759 - 20857814
Alignment:
Q  26 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaatt 81  Q
    |||||||||||||| || ||||| |||||| ||||||| |||||||||||||||||    
T  20857759 ctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaaaatt 20857814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 81
Target Start/End: Complemental strand, 21706331 - 21706276
Alignment:
Q  26 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaatt 81  Q
    |||||||||||||| || ||||| |||||| ||||||| |||||||||||||||||    
T  21706331 ctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaaaatt 21706276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 81
Target Start/End: Complemental strand, 21710873 - 21710818
Alignment:
Q  26 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaatt 81  Q
    |||||||||||||| || ||||| |||||| ||||||| |||||||||||||||||    
T  21710873 ctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaaaatt 21710818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 57
Target Start/End: Complemental strand, 24476380 - 24476350
Alignment:
Q  27 taaggtaagggtgagactatctctcaataat 57  Q
    |||||||||||||||||||||||||||||||    
T  24476380 taaggtaagggtgagactatctctcaataat 24476350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 57
Target Start/End: Original strand, 25091418 - 25091448
Alignment:
Q  27 taaggtaagggtgagactatctctcaataat 57  Q
    |||||||||||||||||||||||||||||||    
T  25091418 taaggtaagggtgagactatctctcaataat 25091448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 28 - 61
Target Start/End: Complemental strand, 18271371 - 18271338
Alignment:
Q  28 aaggtaagggtgagactatctctcaataatcata 61  Q
    |||||||||||||||||| |||||||||||||||    
T  18271371 aaggtaagggtgagactaactctcaataatcata 18271338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 28 - 61
Target Start/End: Complemental strand, 18276025 - 18275992
Alignment:
Q  28 aaggtaagggtgagactatctctcaataatcata 61  Q
    |||||||||||||||||| |||||||||||||||    
T  18276025 aaggtaagggtgagactaactctcaataatcata 18275992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 18 - 204
Target Start/End: Complemental strand, 111946 - 111758
Alignment:
Q  18 ctgcaaaactaaggtaagggtgagactatctctcaataatcataatctataatttctg-aaaattgacctaattgcataattttggaaaataaattgagg 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||||||||||    
T  111946 ctgcaaaactaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaaattgacctaattgcatagttttggaagataaattgagg 111847  T
Q  117 gttagggtttgatgatgattatg-aggggtatgggtattgatcatgttaattctattgtaatgtaatgtttagaatgaaaacttaatct 204  Q
    |||||||||||||||||||| || ||||  ||||||| |||||||||||||||| ||||||| ||||||| ||||||||||||||||||    
T  111846 gttagggtttgatgatgattctgaagggaaatgggtaatgatcatgttaattctcttgtaatataatgttcagaatgaaaacttaatct 111758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1773 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: scaffold1773
Description:

Target: scaffold1773; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 19 - 204
Target Start/End: Complemental strand, 1240 - 1055
Alignment:
Q  19 tgcaaaactaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcataattttggaaaataaattgagggt 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| ||||||||||||||||||||||    
T  1240 tgcaaaactaaggtaagggtgagactatctctcaataatcataatctataattcctgaaa-ttgacctaattgcatagttttggaaaataaattgagggt 1142  T
Q  119 tagggtttgatgatgattatg-aggggtatgggtattgatcatgttaattctattgtaatgtaatgtttagaatgaaaacttaatct 204  Q
    ||||||||||||| ||||||| ||||  ||||||| |||||||||||||||| ||||||| ||||||| ||||||||||||||||||    
T  1141 tagggtttgatgaggattatgaagggaaatgggtaatgatcatgttaattctcttgtaatataatgttcagaatgaaaacttaatct 1055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 19 - 204
Target Start/End: Complemental strand, 50241 - 50056
Alignment:
Q  19 tgcaaaactaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcataattttggaaaataaattgagggt 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| ||||||||||||||||||||||    
T  50241 tgcaaaactaaggtaagggtgagactatctctcaataatcataatctataattcctgaaa-ttgacctaattgcatagttttggaaaataaattgagggt 50143  T
Q  119 tagggtttgatgatgattatg-aggggtatgggtattgatcatgttaattctattgtaatgtaatgtttagaatgaaaacttaatct 204  Q
    ||||||||||||| ||||||| ||||  ||||||| |||||||||||||||| ||||||| ||||||| ||||||||||||||||||    
T  50142 tagggtttgatgaggattatgaagggaaatgggtaatgatcatgttaattctcttgtaatataatgttcagaatgaaaacttaatct 50056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0247 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: scaffold0247
Description:

Target: scaffold0247; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 18 - 210
Target Start/End: Complemental strand, 11405 - 11212
Alignment:
Q  18 ctgcaaaactaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcataattttggaaaata-aattgagg 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| ||||||||    
T  11405 ctgcaaaactaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcttagttttggaaaatagaattgagg 11306  T
Q  117 gttagggtttgatgatgattatgaggggtatgggtattgatcatgttaattctattgtaatgtaatgtttagaatgaaaacttaatctatactg 210  Q
    |||||||||||||||||||| ||  ||| ||| ||| |||||||||||||||| ||||||||| ||||| | ||||||| ||||||| ||||||    
T  11305 gttagggtttgatgatgattctggagggaatgagtaatgatcatgttaattctgttgtaatgtgatgttcaaaatgaaatcttaatccatactg 11212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0924 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: scaffold0924
Description:

Target: scaffold0924; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 18 - 204
Target Start/End: Original strand, 742 - 930
Alignment:
Q  18 ctgcaaaactaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcata-attttggaaaataaattgagg 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||    
T  742 ctgcaaaactaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcatagtttttggaaaataaattgagg 841  T
Q  117 gttagggtttgatgatgattatg-aggggtatgggtattgatcatgttaattctattgtaatgtaatgtttagaatgaaaacttaatct 204  Q
    ||||||||||||||| ||||||| ||||  ||||||| |||||||| |||| || ||||||| ||||||| || || ||||||||||||    
T  842 gttagggtttgatgaggattatgaagggaaatgggtaatgatcatgataatactcttgtaatataatgttcaggataaaaacttaatct 930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0058 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: scaffold0058
Description:

Target: scaffold0058; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 18 - 206
Target Start/End: Complemental strand, 354 - 167
Alignment:
Q  18 ctgcaaaactaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcataattttggaaaataaattgaggg 117  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||    
T  354 ctgcaaaactaaggtaagggtgagactatctctcaataaccataatctataatttctgaaa-ttgacctaattgcatagttttggaaaataaattgaggg 256  T
Q  118 ttagggtttgatgatgattatgaggggtatgggtattgatcatgttaattctattgtaatgtaatgtttagaatgaaaacttaatctat 206  Q
    ||||||||||||||||||| ||||||| ||||||| |||||||||||||| | ||||| | |  |||| ||| |||| |||||||||||    
T  255 ttagggtttgatgatgattctgaggggaatgggtaatgatcatgttaattttcttgtattatggtgttcagattgaagacttaatctat 167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 124; Significance: 8e-64; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 29 - 206
Target Start/End: Original strand, 14398 - 14577
Alignment:
Q  29 aggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcata-attttggaaaataaattgagggttagggtttg 127  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||| ||||||||||||||||||||||    
T  14398 aggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcatagtttttggaagataaattgagggttagggtttg 14497  T
Q  128 atgatgattatg-aggggtatgggtattgatcatgttaattctattgtaatgtaatgtttagaatgaaaacttaatctat 206  Q
    ||||||||| || ||||  ||||||| |||||||||||||||| ||||||||| |||||  |||||||||||||||||||    
T  14498 atgatgattctgaagggaaatgggtaatgatcatgttaattctgttgtaatgtgatgttccgaatgaaaacttaatctat 14577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0117 (Bit Score: 123; Significance: 3e-63; HSPs: 2)
Name: scaffold0117
Description:

Target: scaffold0117; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 18 - 203
Target Start/End: Original strand, 8566 - 8751
Alignment:
Q  18 ctgcaaaactaaggtaagggtgagactatctctcaataatcataatctataatttctg-aaaattgacctaattgcataattttggaaaataaattgagg 116  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| ||| ||||||||||||| ||||||    
T  8566 ctgcaaaactaaggtaagggtgagactatatctcaataatcataatctataatttctgaaaaattgacctaattgtatagttttggaaaataatttgagg 8665  T
Q  117 gttagggtttgatgatgattatgaggggtatgggtattgatcatgttaattctattgtaatgtaatgtttagaatgaaaacttaatc 203  Q
    ||||||||||||||||||||||||  || ||||||| |||| ||||||||||| ||||||| ||||||| | |||||||||||||||    
T  8666 gttagggtttgatgatgattatga-tggaatgggtaatgattatgttaattctcttgtaatttaatgttcaaaatgaaaacttaatc 8751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0117; HSP #2
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 18 - 203
Target Start/End: Original strand, 1889 - 2074
Alignment:
Q  18 ctgcaaaactaaggtaagggtgagactatctctcaataatcataatctataatttctg-aaaattgacctaattgcataattttggaaaataaattgagg 116  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| ||| ||||||||||||| ||||||    
T  1889 ctgcaaaactaaggtaagggtgagactatatctcaataatcataatctataatttctgaaaaattgacctaattgtatagttttggaaaataatttgagg 1988  T
Q  117 gttagggtttgatgatgattatgaggggtatgggtattgatcatgttaattctattgtaatgtaatgtttagaatgaaaacttaatc 203  Q
    |||||||||||||||||||| |||  || ||||||| |||| ||||||||||| ||||||| ||||||| | |||||||||||||||    
T  1989 gttagggtttgatgatgattttga-tggaatgggtaatgattatgttaattctcttgtaatttaatgttcataatgaaaacttaatc 2074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 115; Significance: 2e-58; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 18 - 203
Target Start/End: Original strand, 8045824 - 8046009
Alignment:
Q  18 ctgcaaaactaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcataattttggaaaataaattgaggg 117  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||    
T  8045824 ctgcaaaactaaggtaagggtgagactatctctcgataatcataatctataatttctg-aaattgacctaattgcatagttttggaaaataaattgaggg 8045922  T
Q  118 ttagggtttgatgatgattatg-aggggtatgggtattgatcatgttaattctattgtaatgtaatgtttagaatgaaaacttaatc 203  Q
    ||||||||||| ||  ||| || ||||  |||||||  ||| ||||||||||| ||||||| ||||||| |||||||||||||||||    
T  8045923 ttagggtttgacgagaattctgaagggaaatgggtaaagataatgttaattctcttgtaatataatgttcagaatgaaaacttaatc 8046009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 18 - 204
Target Start/End: Complemental strand, 11848177 - 11847984
Alignment:
Q  18 ctgcaaaactaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcataattttg------gaaaataaat 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | ||||| |||||       ||||| |||    
T  11848177 ctgcaaaactaaggtaagggtgagactatctctcaataatcataatctataattcctgaaaattgacctagtggcatagttttgaaaaattaaaatcaat 11848078  T
Q  112 tgagggttagggtttgatgatgattatg-aggggtatgggtattgatcatgttaattctattgtaatgtaatgtttagaatgaaaacttaatct 204  Q
    |||||||||||||||||||| |||| || || || ||||||| ||||||||||||| || || |||| ||||||| ||||||||||||||||||    
T  11848077 tgagggttagggtttgatgacgattctgaagaggaatgggtaatgatcatgttaatccttttataatataatgttcagaatgaaaacttaatct 11847984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 26 - 136
Target Start/End: Complemental strand, 53483760 - 53483650
Alignment:
Q  26 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcataattttggaaaataaat-tgagggttagggt 124  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| ||| |||| |||||  ||| |||   |||||||    
T  53483760 ctaaggtaagggtgagactatctctcaataatcataatctataattcctgaaa-ttgacctaattgaatagtttttgaaaaataatatgaaaattagggt 53483662  T
Q  125 ttgatgatgatt 136  Q
    ||||||||||||    
T  53483661 ttgatgatgatt 53483650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 26 - 82
Target Start/End: Complemental strand, 15408195 - 15408139
Alignment:
Q  26 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattg 82  Q
    |||||||||||||||||||||||||||||||||||| | ||||||||||||||||||    
T  15408195 ctaaggtaagggtgagactatctctcaataatcatagtatataatttctgaaaattg 15408139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 27 - 83
Target Start/End: Complemental strand, 8834951 - 8834895
Alignment:
Q  27 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattga 83  Q
    ||||||||||||||| ||| |||||||| |||||||| |||||||||||||||||||    
T  8834951 taaggtaagggtgaggctaactctcaatgatcataatatataatttctgaaaattga 8834895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 27 - 83
Target Start/End: Complemental strand, 13888697 - 13888641
Alignment:
Q  27 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattga 83  Q
    ||||||||||||||| ||| |||||||| |||||||| |||||||||||||||||||    
T  13888697 taaggtaagggtgaggctaactctcaatgatcataatgtataatttctgaaaattga 13888641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 29 - 81
Target Start/End: Complemental strand, 14486713 - 14486661
Alignment:
Q  29 aggtaagggtgagactatctctcaataatcataatctataatttctgaaaatt 81  Q
    |||||||||||||||||||  ||||| |||||||| |||||||||||||||||    
T  14486713 aggtaagggtgagactatccttcaatgatcataatatataatttctgaaaatt 14486661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 27 - 83
Target Start/End: Complemental strand, 15245271 - 15245215
Alignment:
Q  27 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattga 83  Q
    ||||||||||||||| ||| |||||||| ||| |||| |||||||||||||||||||    
T  15245271 taaggtaagggtgaggctaactctcaatgatcgtaatatataatttctgaaaattga 15245215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 32 - 83
Target Start/End: Original strand, 22724691 - 22724742
Alignment:
Q  32 taagggtgagactatctctcaataatcataatctataatttctgaaaattga 83  Q
    |||||||||||||||||||||||||| ||| | || ||||||||||||||||    
T  22724691 taagggtgagactatctctcaataataatagtatagaatttctgaaaattga 22724742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 21 - 62
Target Start/End: Original strand, 15747551 - 15747592
Alignment:
Q  21 caaaactaaggtaagggtgagactatctctcaataatcataa 62  Q
    ||||||||||||||||||||||||| ||||||||||| ||||    
T  15747551 caaaactaaggtaagggtgagactaactctcaataattataa 15747592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 83
Target Start/End: Complemental strand, 15308176 - 15308120
Alignment:
Q  27 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattga 83  Q
    |||| |||||||||| ||| |||||||| ||| |||| |||||||||||||||||||    
T  15308176 taagttaagggtgaggctaactctcaatgatcgtaatatataatttctgaaaattga 15308120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 26 - 81
Target Start/End: Original strand, 16146830 - 16146885
Alignment:
Q  26 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaatt 81  Q
    |||||||||||||| || ||||| |||||| ||||||| | |||||||||||||||    
T  16146830 ctaaggtaagggtgggattatctttcaatagtcataatatgtaatttctgaaaatt 16146885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 26 - 81
Target Start/End: Complemental strand, 27906321 - 27906266
Alignment:
Q  26 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaatt 81  Q
    ||||| |||||||| || ||||| ||||| |||||||| |||||||||||||||||    
T  27906321 ctaagataagggtgggattatctttcaatgatcataatgtataatttctgaaaatt 27906266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 57
Target Start/End: Complemental strand, 15069811 - 15069781
Alignment:
Q  27 taaggtaagggtgagactatctctcaataat 57  Q
    |||||||||||||||||||||||||||||||    
T  15069811 taaggtaagggtgagactatctctcaataat 15069781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 57
Target Start/End: Complemental strand, 15076411 - 15076381
Alignment:
Q  27 taaggtaagggtgagactatctctcaataat 57  Q
    |||||||||||||||||||||||||||||||    
T  15076411 taaggtaagggtgagactatctctcaataat 15076381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 26 - 83
Target Start/End: Complemental strand, 14912138 - 14912081
Alignment:
Q  26 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattga 83  Q
    ||||||||||||| |||||| |||||||| ||  |||| ||||| |||||||||||||    
T  14912138 ctaaggtaagggttagactaactctcaatgattgtaatatataacttctgaaaattga 14912081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154 (Bit Score: 104; Significance: 7e-52; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 18 - 207
Target Start/End: Complemental strand, 30921 - 30730
Alignment:
Q  18 ctgcaaaactaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcataattttggaaaat-aaattgagg 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||  | |||||||||    
T  30921 ctgcaaaactaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcatagttttggaaggtaaaattgagg 30822  T
Q  117 gttagggtttgatgatgattatgaggggtatgg-gtattgatcatgttaattctattgtaatgtaatgtttagaatgaaaacttaatctata 207  Q
     ||||||||||||||||||| ||||||| |||| |||  ||||||||||| | | |||||| || ||||  ||||||||  | |||||||||    
T  30821 attagggtttgatgatgattttgaggggaatggtgtaacgatcatgttaaatatgttgtaaagtgatgtgcagaatgaattcctaatctata 30730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0090 (Bit Score: 99; Significance: 6e-49; HSPs: 1)
Name: scaffold0090
Description:

Target: scaffold0090; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 18 - 206
Target Start/End: Complemental strand, 18233 - 18043
Alignment:
Q  18 ctgcaaaactaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcata-attttggaaaataaattgagg 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||  ||| ||||||||||||||||    
T  18233 ctgcaaaactaaggtaagggtgagactatctctcaataatcataatctataatttttgaaaattgacctaattgcttagctttaggaaaataaattgagg 18134  T
Q  117 gttagggtttgatgatgattatgaggggtatgggtattgatcatgttaattct-attgtaatgtaatgtttagaatgaaaacttaatctat 206  Q
    |||| ||||| ||||||||| | | ||| |  |||| || |||||||||||||  ||||||||| ||||  ||||||||||||||| ||||    
T  18133 gttaaggtttaatgatgattctaacgggaaatggtaatggtcatgttaattctgtttgtaatgtgatgtccagaatgaaaacttaacctat 18043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0476 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: scaffold0476
Description:

Target: scaffold0476; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 29 - 210
Target Start/End: Original strand, 3295 - 3478
Alignment:
Q  29 aggtaagggtgagactatctctcaataatc-ataatctataatttctgaaaattgacctaattgcataattttggaaaataaattgagggttagggtttg 127  Q
    |||||||||||||||||||||||| ||||  ||||| | ||||||| |||||||||||||||||| |||  ||||  |  ||||||||||||||||||||    
T  3295 aggtaagggtgagactatctctcattaatagataatatgtaatttcggaaaattgacctaattgcttaaccttggggataaaattgagggttagggtttg 3394  T
Q  128 atgatgattatgaggggtatgggtattg-atcatgttaattctattgtaatgtaatgtttagaatgaaaacttaatctatactg 210  Q
    ||||||||| ||||||| ||||||| || |||||||||||| | ||||||||| ||||| ||||||||| ||||||||||||||    
T  3395 atgatgattctgaggggaatgggtaatgaatcatgttaattttgttgtaatgtgatgttcagaatgaaatcttaatctatactg 3478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0077 (Bit Score: 87; Significance: 9e-42; HSPs: 1)
Name: scaffold0077
Description:

Target: scaffold0077; HSP #1
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 29 - 210
Target Start/End: Original strand, 3624 - 3806
Alignment:
Q  29 aggtaagggtgagactatctctcaataatc-ataatctataatttctgaaaattgacctaattgcataattttggaaaataaattgagggttagggtttg 127  Q
    |||||||||||||||||||||||| ||||  ||||| | ||||||| |||||||||||||||||| |||  |||   |  ||||||||||||||||||||    
T  3624 aggtaagggtgagactatctctcattaatagataatatgtaatttcggaaaattgacctaattgcttaaccttgaggataaaattgagggttagggtttg 3723  T
Q  128 atgatgattatgaggggtatgggtattgatcatgttaattctattgtaatgtaatgtttagaatgaaaacttaatctatactg 210  Q
    ||||||||| ||||||| ||||||| |||||||||||||| | ||||||||| |||||  |||||||| ||||||||||||||    
T  3724 atgatgattctgagggggatgggtaatgatcatgttaattatgttgtaatgtgatgttcggaatgaaatcttaatctatactg 3806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0796 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: scaffold0796
Description:

Target: scaffold0796; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 21 - 136
Target Start/End: Original strand, 1727 - 1841
Alignment:
Q  21 caaaactaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcataattttggaaaataaattgagggtta 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| ||| |||||||||||||  |||  ||||    
T  1727 caaaactaaggtaagggtgagactatctctcaataatcataatctataattcctg-aaattgacctaattgaatagttttggaaaataatatgaaagtta 1825  T
Q  121 gggtttgatgatgatt 136  Q
    ||||||||||||||||    
T  1826 gggtttgatgatgatt 1841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0796; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 21 - 136
Target Start/End: Original strand, 5750 - 5864
Alignment:
Q  21 caaaactaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcataattttggaaaataaattgagggtta 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| ||| |||||||||||||  |||  ||||    
T  5750 caaaactaaggtaagggtgagactatctctcaataatcataatctataattcctg-aaattgacctaattgaatagttttggaaaataatatgaaagtta 5848  T
Q  121 gggtttgatgatgatt 136  Q
    ||||||||||||||||    
T  5849 gggtttgatgatgatt 5864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0456 (Bit Score: 72; Significance: 8e-33; HSPs: 2)
Name: scaffold0456
Description:

Target: scaffold0456; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 22 - 109
Target Start/End: Complemental strand, 991 - 904
Alignment:
Q  22 aaaactaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcataattttggaaaataa 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | |||||| ||||    
T  991 aaaactaaggtaagggtgagactatctctcaataatcataatctatagtttctgaaaattgacctaattgcatagtcttggaagataa 904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0456; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 22 - 109
Target Start/End: Complemental strand, 8136 - 8049
Alignment:
Q  22 aaaactaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcataattttggaaaataa 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | |||||| ||||    
T  8136 aaaactaaggtaagggtgagactatctctcaataatcataatctatagtttctgaaaattgacctaattgcatagtcttggaagataa 8049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129 (Bit Score: 62; Significance: 8e-27; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 20 - 136
Target Start/End: Original strand, 45268 - 45384
Alignment:
Q  20 gcaaaactaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcataattttggaaaataaat-tgagggt 118  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| ||| |||| |||||  ||| |||   |    
T  45268 gcaaatctaaggtaagggtgagactatctctcaataatcataatctataattcctgaaa-ttgacctaattgaatagtttttgaaaaataatatgaaaat 45366  T
Q  119 tagggtttgatgatgatt 136  Q
    ||||||||||||||||||    
T  45367 tagggtttgatgatgatt 45384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0222 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0222
Description:

Target: scaffold0222; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 27 - 91
Target Start/End: Complemental strand, 16875 - 16811
Alignment:
Q  27 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattg 91  Q
    ||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |||||||    
T  16875 taaggtaagggtgagactatctctcaataatcatagtatataatttctgaaaattgatctaattg 16811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0107 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0107
Description:

Target: scaffold0107; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 40523 - 40587
Alignment:
Q  18 ctgcaaaactaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattg 82  Q
    ||||||| |||||||||||||||||||||||||||||||||||| | ||||||||||||||||||    
T  40523 ctgcaaatctaaggtaagggtgagactatctctcaataatcatagtatataatttctgaaaattg 40587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 27 - 91
Target Start/End: Complemental strand, 116951 - 116887
Alignment:
Q  27 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattg 91  Q
    ||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |||||||    
T  116951 taaggtaagggtgagactatctctcaataatcatagtatataatttctgaaaattgatctaattg 116887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 28 - 61
Target Start/End: Complemental strand, 60474 - 60441
Alignment:
Q  28 aaggtaagggtgagactatctctcaataatcata 61  Q
    |||||||||||||||||| |||||||||||||||    
T  60474 aaggtaagggtgagactaactctcaataatcata 60441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0310 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0310
Description:

Target: scaffold0310; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 17708 - 17643
Alignment:
Q  18 ctgcaaaa-ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattg 82  Q
    |||||||| ||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||    
T  17708 ctgcaaaatctaaggtaagggtgagactatctctcaataaccataatgtataatttctgaaaattg 17643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0461 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0461
Description:

Target: scaffold0461; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 27 - 91
Target Start/End: Original strand, 8 - 72
Alignment:
Q  27 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattg 91  Q
    |||||||||||||||||||||||||||||||| ||||  |||||||||||||||||| |||||||    
T  8 taaggtaagggtgagactatctctcaataatcttaatacataatttctgaaaattgatctaattg 72  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0146 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0146
Description:

Target: scaffold0146; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 27 - 91
Target Start/End: Complemental strand, 13687 - 13623
Alignment:
Q  27 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattg 91  Q
    |||||||||||||||||||||||||||||||| ||||  |||||||||||||||||| |||||||    
T  13687 taaggtaagggtgagactatctctcaataatcttaatacataatttctgaaaattgatctaattg 13623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 27 - 91
Target Start/End: Original strand, 101928 - 101992
Alignment:
Q  27 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattg 91  Q
    ||||||||||||||||||||||||||||||||||| | ||||||| ||||||||||| |||||||    
T  101928 taaggtaagggtgagactatctctcaataatcatagtatataattcctgaaaattgatctaattg 101992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 26 - 82
Target Start/End: Complemental strand, 135529 - 135473
Alignment:
Q  26 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattg 82  Q
    |||||||||||||||||||||||||||||||||||| | ||||||||||||||||||    
T  135529 ctaaggtaagggtgagactatctctcaataatcatagtatataatttctgaaaattg 135473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0235 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: scaffold0235
Description:

Target: scaffold0235; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 18 - 80
Target Start/End: Original strand, 22584 - 22646
Alignment:
Q  18 ctgcaaaactaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaat 80  Q
    ||||||| | |||||||||||||||||||||||||||||||||| | ||||||||||||||||    
T  22584 ctgcaaatccaaggtaagggtgagactatctctcaataatcatagtatataatttctgaaaat 22646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0124 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: scaffold0124
Description:

Target: scaffold0124; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 27 - 82
Target Start/End: Original strand, 34276 - 34331
Alignment:
Q  27 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattg 82  Q
    ||||||||||||||||||||||||| ||||||||| | ||||||||||||||||||    
T  34276 taaggtaagggtgagactatctctcgataatcatagtatataatttctgaaaattg 34331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0124; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 26 - 83
Target Start/End: Original strand, 35438 - 35495
Alignment:
Q  26 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattga 83  Q
    ||||||||||||| |||||| |||||||| ||  |||| ||||| |||||||||||||    
T  35438 ctaaggtaagggtaagactaactctcaatgattgtaatgtataacttctgaaaattga 35495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0815 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0815
Description:

Target: scaffold0815; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 18 - 78
Target Start/End: Complemental strand, 1513 - 1453
Alignment:
Q  18 ctgcaaaactaaggtaagggtgagactatctctcaataatcataatctataatttctgaaa 78  Q
    |||||||| ||||||||||||||||||| |||||||| ||| |||| ||||||||||||||    
T  1513 ctgcaaaattaaggtaagggtgagactaactctcaatgatcttaatgtataatttctgaaa 1453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0138 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0138
Description:

Target: scaffold0138; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 27 - 83
Target Start/End: Complemental strand, 12352 - 12296
Alignment:
Q  27 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattga 83  Q
    ||||||||||||||| ||| |||||||| |||||||| |||||||||||||||||||    
T  12352 taaggtaagggtgaggctaactctcaatgatcataatatataatttctgaaaattga 12296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0317 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0317
Description:

Target: scaffold0317; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 27 - 90
Target Start/End: Complemental strand, 1441 - 1378
Alignment:
Q  27 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaatt 90  Q
    |||||||||||||||||||||| ||||| ||||| || |||||||| |||||||||| ||||||    
T  1441 taaggtaagggtgagactatctttcaatgatcatgatatataatttttgaaaattgatctaatt 1378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0139 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0139
Description:

Target: scaffold0139; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 27 - 82
Target Start/End: Original strand, 14997 - 15052
Alignment:
Q  27 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattg 82  Q
    ||||||||||||||||||| |||||||| ||| |||| ||||||||||||||||||    
T  14997 taaggtaagggtgagactaactctcaatgatcttaatatataatttctgaaaattg 15052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2054 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold2054
Description:

Target: scaffold2054; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 18 - 115
Target Start/End: Complemental strand, 778 - 680
Alignment:
Q  18 ctgcaaaactaaggtaagggtgagactatctctcaataatcataatctataatttctg-aaaattgacctaattgcataattttggaaaataaattgag 115  Q
    |||||||||||||||||||||| || ||||| ||||| ||| |||| ||||||||||| |||||| ||||||  | ||| || | ||||||||||||||    
T  778 ctgcaaaactaaggtaagggtgggattatctttcaatgatcttaatatataatttctgaaaaattaacctaaaagaatagttcttgaaaataaattgag 680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0096 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 23 - 83
Target Start/End: Original strand, 39503 - 39563
Alignment:
Q  23 aaactaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattga 83  Q
    |||| |||||||||||||| ||| |||||||| |||||||| ||||||||| |||||||||    
T  39503 aaacaaaggtaagggtgaggctaactctcaatgatcataatatataatttcagaaaattga 39563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0348 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0348
Description:

Target: scaffold0348; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 81
Target Start/End: Complemental strand, 9391 - 9336
Alignment:
Q  26 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaatt 81  Q
    |||||||||||||| || ||||| |||||| ||||||| |||||||||||||||||    
T  9391 ctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaaaatt 9336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0127 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0127
Description:

Target: scaffold0127; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 81
Target Start/End: Complemental strand, 10294 - 10239
Alignment:
Q  26 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaatt 81  Q
    ||||||||||||||||| |||||  ||||||||||||| | |||||||||||||||    
T  10294 ctaaggtaagggtgagattatcttccaataatcataatatgtaatttctgaaaatt 10239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 81
Target Start/End: Complemental strand, 135493 - 135438
Alignment:
Q  26 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaatt 81  Q
    |||||||||| |||||| ||||| |||||| ||||||| |||||||||||||||||    
T  135493 ctaaggtaagcgtgagattatctttcaatagtcataatatataatttctgaaaatt 135438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 81
Target Start/End: Original strand, 493028 - 493082
Alignment:
Q  26 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaatt 81  Q
    ||||||||||||||||| ||||| ||||||||| |||| |||||||||||||||||    
T  493028 ctaaggtaagggtgagattatctttcaataatc-taatgtataatttctgaaaatt 493082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1318 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold1318
Description:

Target: scaffold1318; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 27 - 81
Target Start/End: Original strand, 1913 - 1967
Alignment:
Q  27 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaatt 81  Q
    ||||||||||||| || ||||| |||||| ||||||| |||||||||||||||||    
T  1913 taaggtaagggtgggattatctttcaatagtcataatatataatttctgaaaatt 1967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0790 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0790
Description:

Target: scaffold0790; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 55
Target Start/End: Complemental strand, 5522 - 5480
Alignment:
Q  13 ttatactgcaaaactaaggtaagggtgagactatctctcaata 55  Q
    |||| ||||||||||||||||||||||||||||||| ||||||    
T  5522 ttattctgcaaaactaaggtaagggtgagactatctttcaata 5480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0609 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0609
Description:

Target: scaffold0609; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 26 - 91
Target Start/End: Original strand, 5857 - 5922
Alignment:
Q  26 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattg 91  Q
    |||||||||||||| || ||||| ||||| || ||||| ||||||||||||||||| | |||||||    
T  5857 ctaaggtaagggtgggattatctttcaatgattataatatataatttctgaaaattaatctaattg 5922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0335 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0335
Description:

Target: scaffold0335; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 83
Target Start/End: Original strand, 2628 - 2684
Alignment:
Q  27 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattga 83  Q
    ||||||||||||||| ||| |||||||| || ||||| ||||| |||||||||||||    
T  2628 taaggtaagggtgaggctaactctcaatgattataatatataacttctgaaaattga 2684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0261 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0261
Description:

Target: scaffold0261; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 26 - 81
Target Start/End: Original strand, 23569 - 23624
Alignment:
Q  26 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaatt 81  Q
    |||||||||||||| || ||||| | ||| |||||||| |||||||||||||||||    
T  23569 ctaaggtaagggtgggattatctttgaatgatcataatgtataatttctgaaaatt 23624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 26 - 81
Target Start/End: Original strand, 79490 - 79545
Alignment:
Q  26 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaatt 81  Q
    |||||||||||||| || ||||| |||||| ||||||| | |||||||||||||||    
T  79490 ctaaggtaagggtgggattatctttcaatagtcataatatgtaatttctgaaaatt 79545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0481 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0481
Description:

Target: scaffold0481; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 28 - 73
Target Start/End: Original strand, 676 - 721
Alignment:
Q  28 aaggtaagggtgagactatctctcaataatcataatctataatttc 73  Q
    |||||||||||||||||| |||||||| ||| |||| |||||||||    
T  676 aaggtaagggtgagactaactctcaatgatcttaatgtataatttc 721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0249 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0249
Description:

Target: scaffold0249; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 26 - 79
Target Start/End: Original strand, 13894 - 13947
Alignment:
Q  26 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaa 79  Q
    |||||||||||||| || ||||| ||||| || ||||| |||||||||||||||    
T  13894 ctaaggtaagggtgggattatctttcaatgattataatatataatttctgaaaa 13947  T

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Target: scaffold0600 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0600
Description:

Target: scaffold0600; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 27 - 83
Target Start/End: Complemental strand, 788 - 732
Alignment:
Q  27 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattga 83  Q
    ||||||| ||||||| ||| |||||||| || ||||| ||||| |||||||||||||    
T  788 taaggtaggggtgaggctaactctcaatgattataatatataacttctgaaaattga 732  T

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Target: scaffold0180 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0180
Description:

Target: scaffold0180; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 27 - 76
Target Start/End: Complemental strand, 11681 - 11630
Alignment:
Q  27 taaggtaagggtgagactatctctcaataatcataa--tctataatttctga 76  Q
    ||||||||||||||||||| ||||||||||| ||||  | ||||||||||||    
T  11681 taaggtaagggtgagactaactctcaataattataaattatataatttctga 11630  T

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Target: scaffold0034 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 81
Target Start/End: Complemental strand, 73337 - 73285
Alignment:
Q  29 aggtaagggtgagactatctctcaataatcataatctataatttctgaaaatt 81  Q
    ||||||||||| || ||||| ||||| |||||||| |||||||| ||||||||    
T  73337 aggtaagggtgggattatctttcaatgatcataatgtataatttatgaaaatt 73285  T

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Target: scaffold0031 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 27 - 83
Target Start/End: Complemental strand, 121958 - 121902
Alignment:
Q  27 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattga 83  Q
    ||||||||||||||| ||| |||||||| || ||||| |||||  ||||||||||||    
T  121958 taaggtaagggtgaggctaactctcaatgattataatatataaaatctgaaaattga 121902  T

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Target: scaffold0031; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 27 - 83
Target Start/End: Complemental strand, 132834 - 132778
Alignment:
Q  27 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattga 83  Q
    ||||||||||||||| ||| |||||||| || ||||| |||||  ||||||||||||    
T  132834 taaggtaagggtgaggctaactctcaatgattataatatataaaatctgaaaattga 132778  T

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Target: scaffold0028 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 27 - 79
Target Start/End: Complemental strand, 69801 - 69749
Alignment:
Q  27 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaa 79  Q
    ||||||||||||||||||| || ||||| ||| |||| |||||||| ||||||    
T  69801 taaggtaagggtgagactaactttcaatgatcttaatatataatttatgaaaa 69749  T

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