View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21248_high_2 (Length: 819)

Name: NF21248_high_2
Description: NF21248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21248_high_2
NF21248_high_2
[»] chr2 (4 HSPs)
chr2 (59-814)||(16777963-16778717)
chr2 (365-484)||(35020114-35020233)
chr2 (290-405)||(35370629-35370749)
chr2 (1-38)||(16778738-16778775)
[»] chr4 (4 HSPs)
chr4 (362-607)||(39397625-39397870)
chr4 (295-622)||(35378320-35378653)
chr4 (355-452)||(55667154-55667251)
chr4 (364-452)||(11490755-11490842)
[»] chr7 (3 HSPs)
chr7 (236-467)||(22357891-22358124)
chr7 (682-767)||(28288922-28289007)
chr7 (700-762)||(22357543-22357606)
[»] chr3 (2 HSPs)
chr3 (362-615)||(34855936-34856186)
chr3 (708-759)||(11227368-11227419)
[»] chr5 (2 HSPs)
chr5 (377-529)||(31700869-31701024)
chr5 (681-762)||(17400425-17400505)
[»] chr8 (2 HSPs)
chr8 (512-615)||(9964078-9964181)
chr8 (296-337)||(12892171-12892212)


Alignment Details
Target: chr2 (Bit Score: 602; Significance: 0; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 602; E-Value: 0
Query Start/End: Original strand, 59 - 814
Target Start/End: Complemental strand, 16778717 - 16777963
Alignment:
Q  59 aaatgtgctcaagttgtataacataagagagatagacatatgatgtatagaggtgagagagagaacaagtggacgaccgtgagaaaataacaagggattt 158  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| ||||||||||||||||| ||||    
T  16778717 aaatgtgctcaagttgtattacataagagagatagacatatgatgtagagaggtgagagagagaacaagtagacgactgtgagaaaataacaaggtattt 16778618  T
Q  159 cacttatgagaaagaattactgattatcaactagtggatcgaggaagaagatatcaatgtgaagcagagatgaagtcaggaattaagcttagaggggaca 258  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| | |||||||||||||||||||||||||||    
T  16778617 cacttatgagaaagaatgactgattatcaactagtggatcgaggaagaagatatcaatgtggagcagagacgtagtcaggaattaagcttagaggggaca 16778518  T
Q  259 agtagaaaatatgatttagtgaagnnnnnnntgaatgtttatatgcacgatatttacaagatatttaagaaattataagataaaattatnnnnnnnttca 358  Q
    | ||||||||||||||||||||||       ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||        |||    
T  16778517 aatagaaaatatgatttagtgaagaaaaaaatgaatgtttatatgcacaatatttacaagatatttaagaaattataagataaaattataaaaaaaatca 16778418  T
Q  359 agaatataagaaagatgagagtgtcttgaggcttgtctgagaatgaagaggctaaagcaaattttgaatatatagcagcgaaagaaaatgtgaagcagca 458  Q
    || |||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16778417 aggatataagaaagatgagagtgtcttgaggcttgtctgagaatgataaggctaaagcaaattttgaatatatagcagcgaaagaaaatgtgaagcagca 16778318  T
Q  459 caaatacaattgtatgaagatgaatttatgatgaaatcataaccaatgaatcagtagtgcgcaaccaaaattgtagacggtgattcaatctttgtaaacg 558  Q
     ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  16778317 aaaatacaattgtatgaagatgaatttatgatgaaatcgtaaccaatgaatcagtagtgtgcaaccaaaattgtagacggtgattcaatctttgtaaacg 16778218  T
Q  559 aaactgcaatgagaaatcttatattgatattctagtatagtattaattagggttcttttgtaaacgaaacttgctttggttctttttattcgttgttgtt 658  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  16778217 aaactgcaatgagaaatcttatattgatattctagtatagtattaattagggttcttctgtaaacgaaacttgctttggttctttttattcgttgttgtt 16778118  T
Q  659 aaggattttagttattagtgcaataaacgtaggtgttaaaaacccaatctattgagtcaaaatagaaccataatacaatatcatataaagttcacaaaaa 758  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16778117 aaggattttagttattagtgcaataaacgcaggtgttaaaaacccaatctattgagtcaaaatagaaccataatacaatatcatataaagttcacaaaaa 16778018  T
Q  759 atatgtgtataagattataannnnnnnnaaatgttcgggggatcgtggtctctgct 814  Q
    ||||||||||||||||||||        |||||||| |||||||||||||||||||    
T  16778017 atatgtgtataagattataattttttttaaatgttc-ggggatcgtggtctctgct 16777963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 365 - 484
Target Start/End: Complemental strand, 35020233 - 35020114
Alignment:
Q  365 taagaaagatgagagtgtcttgaggcttgtctgagaatgaagaggctaaagcaaattttgaatatatagcagcgaaagaaaatgtgaagcagcacaaata 464  Q
    |||||||||||||||||| |||||||||||| |||||||||||| ||||||| ||||||||||||||||| | ||||| ||||||||| || || |||||    
T  35020233 taagaaagatgagagtgtattgaggcttgtccgagaatgaagagactaaagcgaattttgaatatatagcggtgaaagtaaatgtgaaacaacaaaaata 35020134  T
Q  465 caattgtatgaagatgaatt 484  Q
    | |  |||||| ||||||||    
T  35020133 cgagcgtatgaggatgaatt 35020114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 290 - 405
Target Start/End: Original strand, 35370629 - 35370749
Alignment:
Q  290 tgaatgtttatatgcacgatatttacaagatatttaagaaattataagata------aaattatnnnnnnnttcaagaatataagaaagatgagagtgtc 383  Q
    |||||||||| ||| || ||||||||||||||||||||||||||| |||||      |||||||       |||||| ||||||||||||||||||||||    
T  35370629 tgaatgtttaaatgtacaatatttacaagatatttaagaaattattagatatattcaaaattataagaaa-ttcaaggatataagaaagatgagagtgtc 35370727  T
Q  384 ttgaggcttgtctgagaatgaa 405  Q
    || |||||||||||||||||||    
T  35370728 tttaggcttgtctgagaatgaa 35370749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 16778775 - 16778738
Alignment:
Q  1 aacttatttctctaaatcaaaatttaaatgttaaatac 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  16778775 aacttatttctctaaatcaaaatttaaatgttaaatac 16778738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 85; Significance: 4e-40; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 362 - 607
Target Start/End: Complemental strand, 39397870 - 39397625
Alignment:
Q  362 atataagaaagatgagagtgtcttgaggcttgtctgagaatgaagaggctaaagcaaattttgaatatatagcagcgaaagaaaatgtgaagcagcacaa 461  Q
    ||||||||||||||||||||| |||||| |||   |||||||||||| ||| |   |||||||||||||||||||| |||||||||||||| ||  | ||    
T  39397870 atataagaaagatgagagtgttttgaggtttgctcgagaatgaagagactacaatgaattttgaatatatagcagcaaaagaaaatgtgaaacaataaaa 39397771  T
Q  462 atacaattgtatgaagatgaatttatgatgaaatcataaccaatgaatcagtag---tgcgcaaccaaaattgtagacggtgattcaatctttgtaaacg 558  Q
    ||||||  || ||| |||||||| | |||||||| |   ||||||||||| | |   |||||||||||||||| |||| |||||||||||||| ||||||    
T  39397770 atacaagcgtgtgaggatgaattcaagatgaaatga---ccaatgaatcaatggcaatgcgcaaccaaaattgcagactgtgattcaatctttttaaacg 39397674  T
Q  559 aaactgcaatgagaaatcttatattgatattctagtatagtattaatta 607  Q
    ||| |||||||| ||||| |||||||  |||||||| ||| ||||||||    
T  39397673 aaattgcaatgataaatcatatattgggattctagtttaggattaatta 39397625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 295 - 622
Target Start/End: Original strand, 35378320 - 35378653
Alignment:
Q  295 gtttatatgcacgatatttacaagatatttaagaaattataagata------aaattatnnnnnnnttcaagaatataagaaagatgagagtgtcttgag 388  Q
    ||||| ||| || |||||||||||||||||||||||||||||||||      |||||||       ||||||||||||| |||||||||||||| || ||    
T  35378320 gtttaaatgtacaatatttacaagatatttaagaaattataagatatattcaaaattataagaaa-ttcaagaatataaaaaagatgagagtgttttaag 35378418  T
Q  389 gcttgtctgagaatgaagaggctaaagcaaattttgaatatatagcagcgaaagaaaatgtgaagcagcacaaatacaattgtatgaagatgaatttatg 488  Q
    |||||| ||||||| || || ||||||| |||||||||| ||||  ||| |||||||||||||| || || ||||| || | ||||| |||||||| |      
T  35378419 gcttgtatgagaataaaaagactaaagcgaattttgaatgtatattagccaaagaaaatgtgaaacaacaaaaatataagtatatgaggatgaattcaaa 35378518  T
Q  489 atgaaatcataaccaatgaa---tcagtagtgcgcaaccaaaattgtagacggtgattcaatctttgtaaacgaaactgcaatgagaaatcttatattga 585  Q
    |||||||    |||||||||   | | ||||||||||||||||||| ||| | |  ||  |||||| ||| ||||| ||||||||| |||| |||||||     
T  35378519 atgaaattgcgaccaatgaattgttactagtgcgcaaccaaaattgcagatgat--ttggatctttctaaccgaaattgcaatgaggaatcatatattgg 35378616  T
Q  586 tattctagtatagtattaattagggttcttttgtaaa 622  Q
     ||||||||  ||  ||||||||||||||| ||||||    
T  35378617 gattctagttaagggttaattagggttcttctgtaaa 35378653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 355 - 452
Target Start/End: Original strand, 55667154 - 55667251
Alignment:
Q  355 ttcaagaatataagaaagatgagagtgtcttgaggcttgtctgagaatgaagaggctaaagcaaattttgaatatatagcagcgaaagaaaatgtgaa 452  Q
    |||||| ||||| |||||| |||||||||||||| ||||| ||||||| | ||| |||| || | ||||||||||||||||  |||| ||||||||||    
T  55667154 ttcaagcatataggaaagacgagagtgtcttgagacttgtgtgagaattacgagactaatgcgacttttgaatatatagcaaagaaataaaatgtgaa 55667251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 364 - 452
Target Start/End: Complemental strand, 11490842 - 11490755
Alignment:
Q  364 ataagaaagatgagagtgtcttgaggcttgtctgagaatgaagaggctaaagcaaattttgaatatatagcagcgaaagaaaatgtgaa 452  Q
    |||| |||||||| ||| ||||||||||||||| | ||||| ||| |||||||  ||||| |||| |||| || |||||||||||||||    
T  11490842 ataaaaaagatgatagtatcttgaggcttgtctaataatgacgagactaaagc-gatttttaatacataggagagaaagaaaatgtgaa 11490755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 83; Significance: 7e-39; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 236 - 467
Target Start/End: Complemental strand, 22358124 - 22357891
Alignment:
Q  236 aggaattaagcttagaggggac-aagtagaaaatatgatttagtgaagnnnnnnntgaatgtttatatgcacgatatttacaagatatttaagaaattat 334  Q
    ||||||||||||||| |||||| |||| |||||||||||||||||||        |||||||||| ||| |  ||||||  |||||||||||||||||||    
T  22358124 aggaattaagcttaggggggaccaagttgaaaatatgatttagtgaa---aaaaatgaatgtttaaatgaataatatttgaaagatatttaagaaattat 22358028  T
Q  335 aagata------aaattatnnnnnnnttcaagaatataagaaagatgagagtgtcttgaggcttgtctgagaatgaagaggctaaagcaaattttgaata 428  Q
    ||||||      |||||||       |||| ||||||||||||||||||  ||| ||||||||||||| ||||||||||| |||||||||||||||||||    
T  22358027 aagatatattcaaaattataagaaatttcacgaatataagaaagatgag--tgttttgaggcttgtctaagaatgaagagactaaagcaaattttgaata 22357930  T
Q  429 tatagcagcgaaagaaaatgtgaagcagcacaaatacaa 467  Q
    |||| ||||||||||||||||||| || || ||||||||    
T  22357929 tataacagcgaaagaaaatgtgaaacaacaaaaatacaa 22357891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 682 - 767
Target Start/End: Original strand, 28288922 - 28289007
Alignment:
Q  682 taaacgtaggtgttaaaaacccaatctattgagtcaaaatagaaccataatacaatatcatataaagttcacaaaaaatatgtgta 767  Q
    ||||| |||||||| || | ||||| |||||||| |||| || ||||| |||||||||||||||||||| | |||| |||| ||||    
T  28288922 taaacataggtgtttaagatccaatatattgagttaaaaaaggaccattatacaatatcatataaagttaaaaaaatatatatgta 28289007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 700 - 762
Target Start/End: Complemental strand, 22357606 - 22357543
Alignment:
Q  700 acccaatctattgagtcaaaata-gaaccataatacaatatcatataaagttcacaaaaaatat 762  Q
    ||||||| |||||||| |||| | | ||||| ||||||||||||||| ||||||||||||||||    
T  22357606 acccaatatattgagtaaaaagaaggaccattatacaatatcatatatagttcacaaaaaatat 22357543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 76; Significance: 1e-34; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 362 - 615
Target Start/End: Complemental strand, 34856186 - 34855936
Alignment:
Q  362 atataagaaagatgagagtgtcttgaggcttgtctgagaatgaagaggctaaagcaaattttgaatatatagcagcgaaagaaaatgtgaagcagcacaa 461  Q
    ||||||||||||||| |||||||||||| |||  ||||||||||||| ||||| | |||||||||||||  | ||| |||||||||||||| ||  | ||    
T  34856186 atataagaaagatgaaagtgtcttgaggtttgcttgagaatgaagagactaaaacgaattttgaatata--gtagcaaaagaaaatgtgaaacaataaaa 34856089  T
Q  462 atacaattgtatgaagatgaatttatgatgaaatcataaccaatgaatca--gtagtgcgcaaccaaaattgtagacggtgattcaatctttgtaaacga 559  Q
    |||||| ||| | | ||||| |||| |||||||| |   ||||||||  |  | | ||| |||||||||||| ||||||||||||||||||| |||||||    
T  34856088 atacaagtgtgttaggatgattttaagatgaaatga---ccaatgaacaatggcaatgcacaaccaaaattgcagacggtgattcaatctttctaaacga 34855992  T
Q  560 aactgcaatgagaaatcttatattgatattctagtatagtattaattagggttctt 615  Q
    || ||||||||  |||| |||||||  ||||||||  || ||||||||||||||||    
T  34855991 aattgcaatgatgaatcatatattgggattctagttgaggattaattagggttctt 34855936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 708 - 759
Target Start/End: Complemental strand, 11227419 - 11227368
Alignment:
Q  708 tattgagtcaaaatagaaccataatacaatatcatataaagttcacaaaaaa 759  Q
    ||||||||||||| | |||||||||| |||||||||||||||| | ||||||    
T  11227419 tattgagtcaaaaaacaaccataatataatatcatataaagtttagaaaaaa 11227368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 1e-21; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 377 - 529
Target Start/End: Original strand, 31700869 - 31701024
Alignment:
Q  377 gagtgtcttgaggcttgtctgagaatgaagaggctaaagcaaattttgaatatatagcagcgaaagaaaatgtgaagcagcacaaatacaattgtatgaa 476  Q
    |||||||||||||||||  |||||||||||||  ||||||||||||||||||| ||  |||||||||||||||||| || || || |||||   | |||     
T  31700869 gagtgtcttgaggcttgcttgagaatgaagagaataaagcaaattttgaatatttaatagcgaaagaaaatgtgaaacaacaaaactacaagcatgtgag 31700968  T
Q  477 gatgaatttatgatgaaatcataaccaatgaatc---agtagtgcgcaaccaaaat 529  Q
    |||||||| | |||||||||  ||||| ||||||    ||||||||||||||||||    
T  31700969 gatgaattcaggatgaaatcgcaaccattgaatcgttggtagtgcgcaaccaaaat 31701024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 681 - 762
Target Start/End: Original strand, 17400425 - 17400505
Alignment:
Q  681 ataaacgtaggtgttaaaaacccaatctattgagtcaaaatagaaccataatacaatatcatataaagttcacaaaaaatat 762  Q
    ||||| ||||||||| ||| |||||| |||||||| |||  || || || |||||||  |||||||||||||||||||||||    
T  17400425 ataaatgtaggtgtttaaa-cccaatatattgagtaaaataaggactattatacaattacatataaagttcacaaaaaatat 17400505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 512 - 615
Target Start/End: Original strand, 9964078 - 9964181
Alignment:
Q  512 gtagtgcgcaaccaaaattgtagacggtgattcaatctttgtaaacgaaactgcaatgagaaatcttatattgatattctagtatagtattaattagggt 611  Q
    |||||| ||||||||||||| |||  ||| ||  |||||| ||||| ||| || |||||| |||| |||||||| ||||||||  || |||| |||||||    
T  9964078 gtagtgagcaaccaaaattgcagatagtgttttgatctttctaaacaaaattgtaatgaggaatcgtatattgagattctagttcaggattagttagggt 9964177  T
Q  612 tctt 615  Q
    ||||    
T  9964178 tctt 9964181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 296 - 337
Target Start/End: Complemental strand, 12892212 - 12892171
Alignment:
Q  296 tttatatgcacgatatttacaagatatttaagaaattataag 337  Q
    |||| ||||| ||||| |||||||||||||||||||||||||    
T  12892212 tttaaatgcatgatatatacaagatatttaagaaattataag 12892171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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