View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21248_high_3 (Length: 734)

Name: NF21248_high_3
Description: NF21248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21248_high_3
NF21248_high_3
[»] chr6 (10 HSPs)
chr6 (18-276)||(13114140-13114397)
chr6 (185-278)||(13202914-13203008)
chr6 (175-228)||(13171789-13171842)
chr6 (27-73)||(13149549-13149595)
chr6 (311-383)||(7678636-7678708)
chr6 (26-70)||(9944901-9944945)
chr6 (204-236)||(13202792-13202824)
chr6 (312-343)||(9699185-9699216)
chr6 (313-343)||(22353298-22353328)
chr6 (305-343)||(24051247-24051285)
[»] scaffold0140 (2 HSPs)
scaffold0140 (311-546)||(35480-35719)
scaffold0140 (604-702)||(35778-35877)
[»] chr1 (8 HSPs)
chr1 (316-525)||(52947350-52947560)
chr1 (316-500)||(46652652-46652837)
chr1 (319-500)||(46651367-46651549)
chr1 (301-378)||(33257869-33257946)
chr1 (301-378)||(33278041-33278118)
chr1 (311-378)||(16673250-16673317)
chr1 (313-343)||(10771694-10771724)
chr1 (310-343)||(44503185-44503218)
[»] chr5 (5 HSPs)
chr5 (316-500)||(42775423-42775608)
chr5 (319-386)||(42776803-42776871)
chr5 (313-343)||(35989611-35989641)
chr5 (314-343)||(23912221-23912250)
chr5 (306-343)||(31024354-31024391)
[»] chr4 (8 HSPs)
chr4 (308-500)||(39929225-39929418)
chr4 (319-500)||(39927939-39928121)
chr4 (642-711)||(13508121-13508190)
chr4 (311-378)||(44251603-44251670)
chr4 (312-343)||(47848856-47848887)
chr4 (316-378)||(10337107-10337169)
chr4 (313-343)||(35022481-35022511)
chr4 (309-378)||(48713456-48713525)
[»] chr3 (6 HSPs)
chr3 (311-479)||(8392695-8392864)
chr3 (311-500)||(45981405-45981595)
chr3 (311-386)||(8391399-8391475)
chr3 (312-343)||(3990874-3990905)
chr3 (313-343)||(26052205-26052235)
chr3 (313-343)||(54600133-54600163)
[»] scaffold0018 (1 HSPs)
scaffold0018 (316-500)||(193594-193779)
[»] chr2 (3 HSPs)
chr2 (316-500)||(20587042-20587227)
chr2 (316-500)||(20588330-20588515)
chr2 (311-378)||(28563374-28563441)
[»] chr7 (12 HSPs)
chr7 (316-500)||(28848561-28848742)
chr7 (316-500)||(43546601-43546786)
chr7 (319-500)||(43545348-43545530)
chr7 (311-386)||(25008090-25008166)
chr7 (319-500)||(25009356-25009538)
chr7 (307-378)||(31393653-31393724)
chr7 (309-378)||(40028453-40028522)
chr7 (319-386)||(28849953-28850021)
chr7 (310-343)||(23966312-23966345)
chr7 (435-500)||(25008205-25008270)
chr7 (435-500)||(28849849-28849914)
chr7 (310-343)||(43901623-43901656)
[»] scaffold0524 (2 HSPs)
scaffold0524 (319-521)||(8919-9122)
scaffold0524 (313-451)||(7698-7837)
[»] scaffold0472 (2 HSPs)
scaffold0472 (310-500)||(9017-9208)
scaffold0472 (411-480)||(10337-10406)
[»] chr8 (7 HSPs)
chr8 (316-500)||(35506799-35506984)
chr8 (310-500)||(35505519-35505710)
chr8 (311-343)||(9898962-9898994)
chr8 (316-378)||(25264343-25264405)
chr8 (313-343)||(26636288-26636318)
chr8 (435-480)||(35750759-35750804)
chr8 (310-343)||(37587396-37587429)
[»] scaffold1889 (1 HSPs)
scaffold1889 (24-83)||(335-394)
[»] scaffold0369 (1 HSPs)
scaffold0369 (310-386)||(8255-8332)
[»] scaffold0141 (1 HSPs)
scaffold0141 (303-343)||(10296-10336)


Alignment Details
Target: chr6 (Bit Score: 199; Significance: 1e-108; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 18 - 276
Target Start/End: Original strand, 13114140 - 13114397
Alignment:
Q  18 aaatattgcatattgattcctaaatcaatttaattaccggtgtactagatccattaagaagttgaacacaaccacttttnnnnnnnncatagattagtgt 117  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||         |||||||| ||||    
T  13114140 aaatattgcttattgattcctaaatcaatttaattaccggtgtactagatccactaagaagttgaacacaacctcttt-aaaaaaaacatagattggtgt 13114238  T
Q  118 ataaaagaaaacaatatcatatatctactttcgaaatcagtaaaattactgggcattcaaatgaattaaaccacaatcaccaaaagtgtctccctgtttt 217  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  13114239 ataaaagaaaacaatatcatgtatctactttcgaaatcagtaaaattactgggcattcaaatgaattaaaccacaatcaccaaaagtgtccccctgtttt 13114338  T
Q  218 aaatctaaatcccttttatcaattattggacaaaaaattcatgcttataaattcaattt 276  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  13114339 aaatctaaatcccttttatcaattattggacaaaaatttcatgcttataaattcaattt 13114397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 185 - 278
Target Start/End: Original strand, 13202914 - 13203008
Alignment:
Q  185 aaaccacaatcaccaaaagtgtctccctgttttaaatctaaatc-ccttttatcaattattggacaaaaaattcatgcttataaattcaattttt 278  Q
    |||| |||||||||||||||||||| |||||||||||||||||| | ||||||||||  ||| || ||   | ||||||||||||||||||||||    
T  13202914 aaacaacaatcaccaaaagtgtctcgctgttttaaatctaaatcactttttatcaatcgttgtactaattttgcatgcttataaattcaattttt 13203008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 175 - 228
Target Start/End: Original strand, 13171789 - 13171842
Alignment:
Q  175 caaatgaattaaaccacaatcaccaaaagtgtctccctgttttaaatctaaatc 228  Q
    |||||||| ||||| |||||||||||||||||||| ||||||||||||||||||    
T  13171789 caaatgaactaaacaacaatcaccaaaagtgtctcgctgttttaaatctaaatc 13171842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 27 - 73
Target Start/End: Complemental strand, 13149595 - 13149549
Alignment:
Q  27 atattgattcctaaatcaatttaattaccggtgtactagatccatta 73  Q
    ||||||| ||||||||||||| |||||| ||||||||||||||||||    
T  13149595 atattgaatcctaaatcaattaaattactggtgtactagatccatta 13149549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 311 - 383
Target Start/End: Complemental strand, 7678708 - 7678636
Alignment:
Q  311 aaggtttaaatatgcaaaccgtccctgtaattttgcgcatttttgcaattcgtccttgtatcttttttgtttc 383  Q
    |||| ||||||||| ||| |||||||||||||| |||  |||||||  || ||||||||||||||||| ||||    
T  7678708 aaggcttaaatatgtaaatcgtccctgtaatttggcgtgtttttgctttttgtccttgtatcttttttttttc 7678636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 26 - 70
Target Start/End: Complemental strand, 9944945 - 9944901
Alignment:
Q  26 catattgattcctaaatcaatttaattaccggtgtactagatcca 70  Q
    |||||||||||||||||||||||||||||   |||||||||||||    
T  9944945 catattgattcctaaatcaatttaattactaatgtactagatcca 9944901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 204 - 236
Target Start/End: Original strand, 13202792 - 13202824
Alignment:
Q  204 tgtctccctgttttaaatctaaatcccttttat 236  Q
    |||||||||||||||||||||||||||||||||    
T  13202792 tgtctccctgttttaaatctaaatcccttttat 13202824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 312 - 343
Target Start/End: Complemental strand, 9699216 - 9699185
Alignment:
Q  312 aggtttaaatatgcaaaccgtccctgtaattt 343  Q
    ||||||||||||||||||||||||||||||||    
T  9699216 aggtttaaatatgcaaaccgtccctgtaattt 9699185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 313 - 343
Target Start/End: Complemental strand, 22353328 - 22353298
Alignment:
Q  313 ggtttaaatatgcaaaccgtccctgtaattt 343  Q
    |||||||||||||||||||||||||||||||    
T  22353328 ggtttaaatatgcaaaccgtccctgtaattt 22353298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 305 - 343
Target Start/End: Original strand, 24051247 - 24051285
Alignment:
Q  305 ttttttaaggtttaaatatgcaaaccgtccctgtaattt 343  Q
    |||||| ||| ||||||||||||||||||||||||||||    
T  24051247 tttttttaggcttaaatatgcaaaccgtccctgtaattt 24051285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0140 (Bit Score: 170; Significance: 7e-91; HSPs: 2)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 170; E-Value: 7e-91
Query Start/End: Original strand, 311 - 546
Target Start/End: Original strand, 35480 - 35719
Alignment:
Q  311 aaggtttaaatatgcaaaccgtccctgtaattttgcgcatttttgcaattcgtccttgtatc---ttttttgtttcaaacctctccttgtaag-cttttt 406  Q
    |||| |||||||||||||||||||||||||||| ||||||||||||||||||||| |||||    |||||||||||||| ||||||||||||| ||||||    
T  35480 aaggcttaaatatgcaaaccgtccctgtaatttcgcgcatttttgcaattcgtccctgtattcttttttttgtttcaaaactctccttgtaagtcttttt 35579  T
Q  407 tcgttttgcaaatggtccttcccgttaactcccgttacaaaaacgactaggtggcagacggagacacacgtggcttactgtgacttggcaaaaggagtgt 506  Q
    ||||||||||||||||| ||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| |||||||||||||||||| ||    
T  35580 tcgttttgcaaatggtcattcccgttaactcccgttacaaaaacggcgaggtggcagacggagacacacgtggcttacggtgacttggcaaaaggagggt 35679  T
Q  507 tacgtgtcaaaagagttgggtagtggctagattcagggac 546  Q
    ||||||||||||||| ||||||||||||||||| ||||||    
T  35680 tacgtgtcaaaagagctgggtagtggctagattgagggac 35719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0140; HSP #2
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 604 - 702
Target Start/End: Original strand, 35778 - 35877
Alignment:
Q  604 tttttaatttaaaaattgtagttttcatcttcttcttccctctgtttatttgttctgcatctctcacccactaccttcttcatctttc-tgccaaatttt 702  Q
    ||||||||||||||| ||||||||||||||||||| ||| ||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||    
T  35778 tttttaatttaaaaactgtagttttcatcttcttcatccttctgtttatttgttcagcatctctcacccactaccttcttcatctttcttgccaaatttt 35877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 155; Significance: 7e-82; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 155; E-Value: 7e-82
Query Start/End: Original strand, 316 - 525
Target Start/End: Original strand, 52947350 - 52947560
Alignment:
Q  316 ttaaatatgcaaaccgtccctgtaattttgcgcatttttgcaattcgtccttgtatctttt-ttgtttcaaacctctccttgtaagcttttttcgttttg 414  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| |||||||||| |||||||||||||||||||||||||||    
T  52947350 ttaaatatgcaaaccgtctctgtaattttgcgcatttttgcaattcgtccatgtatctttttttgtttcaaaactctccttgtaagcttttttcgttttg 52947449  T
Q  415 caaatggtccttcccgttaactcccgttacaaaaacgactaggtggcagacggagacacacgtggcttactgtgacttggcaaaaggagtgttacgtgtc 514  Q
    |||||| | |||||||||||||||||||||||||||| | ||||||||| |||||||| |||||||||| ||||||||| ||||||||| ||||||||||    
T  52947450 caaatgattcttcccgttaactcccgttacaaaaacggcgaggtggcaggcggagacatacgtggcttagtgtgacttgacaaaaggagggttacgtgtc 52947549  T
Q  515 aaaagagttgg 525  Q
    |||||||||||    
T  52947550 aaaagagttgg 52947560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 316 - 500
Target Start/End: Complemental strand, 46652837 - 46652652
Alignment:
Q  316 ttaaatatgcaaaccgtccctgtaattttgcgcatttttgcaattcgtccttgtatctttttt-gtttcaaacctctccttgtaagcttttttcgttttg 414  Q
    ||||||||| ||| |||||||||||||| |||  ||||||||| |||||| |||||||||||| ||||||||    |||||||||| |  |  |  ||||    
T  46652837 ttaaatatgtaaaacgtccctgtaatttcgcgtgtttttgcaaatcgtccctgtatctttttttgtttcaaaatcatccttgtaagttactagccgtttg 46652738  T
Q  415 caaatggtccttcccgttaactcccgttacaaaaacgactaggtggcagacggagacacacgtggcttactgtgacttggcaaaag 500  Q
    ||| | |||| ||||||||||||||||||||||||||    ||||||||||||||||||||| |||  | ||||| ||||||||||    
T  46652737 caattcgtccctcccgttaactcccgttacaaaaacgttatggtggcagacggagacacacgcggcgaagtgtgagttggcaaaag 46652652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 319 - 500
Target Start/End: Original strand, 46651367 - 46651549
Alignment:
Q  319 aatatgcaaaccgtccctgtaattttgcgcatttttgcaattcgtccttgtatctttttt-gtttcaaacctctccttgtaagcttttt-tcgttttgca 416  Q
    |||||||||| |||||||||||||| |||  ||||||||| |||||| |||||||||||| ||||||||    |||||||||| |     |||||| |||    
T  46651367 aatatgcaaaacgtccctgtaatttcgcgtgtttttgcaaatcgtccctgtatctttttttgtttcaaaatcatccttgtaagttgccaatcgttt-gca 46651465  T
Q  417 aatggtccttcccgttaactcccgttacaaaaacgactaggtggcagacggagacacacgtggcttactgtgacttggcaaaag 500  Q
    | |  ||| ||||||||||||||||||||||||||    ||||||||||||||||||||||||   | ||||| ||||||||||    
T  46651466 attcatccctcccgttaactcccgttacaaaaacgttgtggtggcagacggagacacacgtggtgaagtgtgagttggcaaaag 46651549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 301 - 378
Target Start/End: Original strand, 33257869 - 33257946
Alignment:
Q  301 ataattttttaaggtttaaatatgcaaaccgtccctgtaattttgcgcatttttgcaattcgtccttgtatctttttt 378  Q
    |||||||||||||| ||||||||| ||| |||||||||||||| |||  ||||||   || |||||||||||||||||    
T  33257869 ataattttttaaggcttaaatatgtaaatcgtccctgtaatttggcgtgtttttggtttttgtccttgtatctttttt 33257946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 301 - 378
Target Start/End: Original strand, 33278041 - 33278118
Alignment:
Q  301 ataattttttaaggtttaaatatgcaaaccgtccctgtaattttgcgcatttttgcaattcgtccttgtatctttttt 378  Q
    |||||||||||||| ||||||||| ||| |||||||||||||| |||  ||||||   || |||||||||||||||||    
T  33278041 ataattttttaaggcttaaatatgtaaatcgtccctgtaatttggcgtgtttttggtttttgtccttgtatctttttt 33278118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 311 - 378
Target Start/End: Complemental strand, 16673317 - 16673250
Alignment:
Q  311 aaggtttaaatatgcaaaccgtccctgtaattttgcgcatttttgcaattcgtccttgtatctttttt 378  Q
    |||| ||||||||| ||| ||||||||||||||||||  ||||||   ||||||| ||||||||||||    
T  16673317 aaggcttaaatatgtaaatcgtccctgtaattttgcgtgtttttggttttcgtccctgtatctttttt 16673250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 313 - 343
Target Start/End: Complemental strand, 10771724 - 10771694
Alignment:
Q  313 ggtttaaatatgcaaaccgtccctgtaattt 343  Q
    |||||||||||||||||||||||||||||||    
T  10771724 ggtttaaatatgcaaaccgtccctgtaattt 10771694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 310 - 343
Target Start/End: Original strand, 44503185 - 44503218
Alignment:
Q  310 taaggtttaaatatgcaaaccgtccctgtaattt 343  Q
    ||||||||||||||||||||||||| ||||||||    
T  44503185 taaggtttaaatatgcaaaccgtccttgtaattt 44503218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 58; Significance: 5e-24; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 316 - 500
Target Start/End: Original strand, 42775423 - 42775608
Alignment:
Q  316 ttaaatatgcaaaccgtccctgtaattttgcgcatttttgcaattcgtccttgtatctttttt-gtttcaaacctctccttgtaagcttttttcgttttg 414  Q
    ||||||||| ||| ||| |||||||||| |||  ||||||||| ||||||||||||||||||| ||||||||    |||||||||| |  |  |  ||||    
T  42775423 ttaaatatgtaaaacgttcctgtaatttcgcgtgtttttgcaaatcgtccttgtatctttttttgtttcaaaatcatccttgtaagttactagccgtttg 42775522  T
Q  415 caaatggtccttcccgttaactcccgttacaaaaacgactaggtggcagacggagacacacgtggcttactgtgacttggcaaaag 500  Q
    ||| | |||| ||||||||||||||||||||||||||    ||||||||||||||||||||| |||  | ||||| ||||||||||    
T  42775523 caattcgtccctcccgttaactcccgttacaaaaacgttgtggtggcagacggagacacacgcggcgaagtgtgagttggcaaaag 42775608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 319 - 386
Target Start/End: Complemental strand, 42776871 - 42776803
Alignment:
Q  319 aatatgcaaaccgtccctgtaattttgcgcatttttgcaattcgtccttgtatctt-ttttgtttcaaa 386  Q
    ||||||||||||||||||||||||| |||  ||||||||| |||||| |||||||| ||||||||||||    
T  42776871 aatatgcaaaccgtccctgtaatttcgcgtgtttttgcaaatcgtccctgtatctttttttgtttcaaa 42776803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 313 - 343
Target Start/End: Complemental strand, 35989641 - 35989611
Alignment:
Q  313 ggtttaaatatgcaaaccgtccctgtaattt 343  Q
    |||||||||||||||||||||||||||||||    
T  35989641 ggtttaaatatgcaaaccgtccctgtaattt 35989611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 314 - 343
Target Start/End: Complemental strand, 23912250 - 23912221
Alignment:
Q  314 gtttaaatatgcaaaccgtccctgtaattt 343  Q
    ||||||||||||||||||||||||||||||    
T  23912250 gtttaaatatgcaaaccgtccctgtaattt 23912221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 306 - 343
Target Start/End: Complemental strand, 31024391 - 31024354
Alignment:
Q  306 tttttaaggtttaaatatgcaaaccgtccctgtaattt 343  Q
    ||||| ||| ||||||||||||||||||||||||||||    
T  31024391 ttttttaggattaaatatgcaaaccgtccctgtaattt 31024354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 5e-24; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 308 - 500
Target Start/End: Complemental strand, 39929418 - 39929225
Alignment:
Q  308 tttaaggtttaaatatgcaaaccgtccctgtaattttgcgcatttttgcaattcgtccttgtatctttttt-gtttcaaacctctccttgtaagcttttt 406  Q
    ||||||| ||||||||| ||| ||||| |||||||| |||  ||||||||| |||||| |||||||||||| ||||||||    |||||||||| |  |     
T  39929418 tttaaggcttaaatatgtaaaacgtccatgtaatttcgcgtgtttttgcaaatcgtccctgtatctttttttgtttcaaaatcatccttgtaagttacta 39929319  T
Q  407 tcgttttgcaaatggtccttcccgttaactcccgttacaaaaacgactaggtggcagacggagacacacgtggcttactgtgacttggcaaaag 500  Q
     |  ||||||| | |||| ||||||||||||||||||||||||||    ||||||||||||||||||||| |||  | ||||| ||||||||||    
T  39929318 gccgtttgcaattcgtccctcccgttaactcccgttacaaaaacgttatggtggcagacggagacacacgcggcgaagtgtgagttggcaaaag 39929225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 319 - 500
Target Start/End: Original strand, 39927939 - 39928121
Alignment:
Q  319 aatatgcaaaccgtccctgtaattttgcgcatttttgcaattcgtccttgtatc-ttttttgtttcaaacctctccttgtaagct-tttttcgttttgca 416  Q
    |||||||||| |||||||||||||| |||  ||||||||| |||||| |||||| ||||||||||||||    ||||| |||| |     ||| ||||||    
T  39927939 aatatgcaaaacgtccctgtaatttcgcgtgtttttgcaaatcgtccctgtatctttttttgtttcaaaatcatccttctaagttgccaatcg-tttgca 39928037  T
Q  417 aatggtccttcccgttaactcccgttacaaaaacgactaggtggcagacggagacacacgtggcttactgtgacttggcaaaag 500  Q
    | |  ||| ||||||||||||||||||||||||||    ||||||||||||||||||| ||||   | ||||| ||||||||||    
T  39928038 attcatccctcccgttaactcccgttacaaaaacgttgtggtggcagacggagacacatgtggtgaagtgtgagttggcaaaag 39928121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 642 - 711
Target Start/End: Complemental strand, 13508190 - 13508121
Alignment:
Q  642 cctctgtttatttgttctgcatctctcacccactaccttcttcatctttctgccaaatttttcatctcac 711  Q
    ||||||||| |||||| | ||||||||||||| | ||||||||||||||||| ||| || ||||||||||    
T  13508190 cctctgtttttttgttattcatctctcacccaattccttcttcatctttctgtcaatttcttcatctcac 13508121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 311 - 378
Target Start/End: Original strand, 44251603 - 44251670
Alignment:
Q  311 aaggtttaaatatgcaaaccgtccctgtaattttgcgcatttttgcaattcgtccttgtatctttttt 378  Q
    |||| ||||||||| ||| |||||||||||||| |||  ||||||   ||||||||||||||||||||    
T  44251603 aaggcttaaatatgtaaatcgtccctgtaatttggcgtgtttttggttttcgtccttgtatctttttt 44251670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 312 - 343
Target Start/End: Complemental strand, 47848887 - 47848856
Alignment:
Q  312 aggtttaaatatgcaaaccgtccctgtaattt 343  Q
    ||||||||||||||||||||||||||||||||    
T  47848887 aggtttaaatatgcaaaccgtccctgtaattt 47848856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 316 - 378
Target Start/End: Original strand, 10337107 - 10337169
Alignment:
Q  316 ttaaatatgcaaaccgtccctgtaattttgcgcatttttgcaattcgtccttgtatctttttt 378  Q
    ||||||||| ||| |||||||||||||| |||  ||||||   ||||||||||||||||||||    
T  10337107 ttaaatatgtaaatcgtccctgtaatttggcgtgtttttggttttcgtccttgtatctttttt 10337169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 313 - 343
Target Start/End: Complemental strand, 35022511 - 35022481
Alignment:
Q  313 ggtttaaatatgcaaaccgtccctgtaattt 343  Q
    |||||||||||||||||||||||||||||||    
T  35022511 ggtttaaatatgcaaaccgtccctgtaattt 35022481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 309 - 378
Target Start/End: Complemental strand, 48713525 - 48713456
Alignment:
Q  309 ttaaggtttaaatatgcaaaccgtccctgtaattttgcgcatttttgcaattcgtccttgtatctttttt 378  Q
    |||||| ||||||||| ||| |||||||||||||| |||  ||||||   ||||||| ||||||||||||    
T  48713525 ttaaggcttaaatatgtaaatcgtccctgtaatttggcgtgtttttggttttcgtccctgtatctttttt 48713456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 3e-22; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 311 - 479
Target Start/End: Complemental strand, 8392864 - 8392695
Alignment:
Q  311 aaggtttaaatatgcaaaccgtccctgtaattttgcgcatttttgcaattcgtccttgtatctt-ttttgtttcaaacctctccttgtaagct-tttttc 408  Q
    ||||||| ||||||||||||||||||||||||| |||  ||||||||| |||||| |||||||| ||||||||||||    |||||||||| |     ||    
T  8392864 aaggttttaatatgcaaaccgtccctgtaatttcgcgtgtttttgcaaatcgtccctgtatctttttttgtttcaaaatcatccttgtaagttgccaatc 8392765  T
Q  409 gttttgcaaatggtccttcccgttaactcccgttacaaaaacgactaggtggcagacggagacacacgtgg 479  Q
    | ||||||| |  ||| ||||||||||||||||||||||||||    ||||||||||||||||||||||||    
T  8392764 g-tttgcaattcatccctcccgttaactcccgttacaaaaacgttgtggtggcagacggagacacacgtgg 8392695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 311 - 500
Target Start/End: Original strand, 45981405 - 45981595
Alignment:
Q  311 aaggtttaaatatgcaaaccgtccctgtaattttgcgcatttttgcaattcgtccttgtatctttttt-gtttcaaacctctccttgtaagcttttttcg 409  Q
    |||| ||||||||| ||| ||||| |||||||| |||  ||||||||| ||||||||||||||||||| ||||||||    |||||||||| |  |  |     
T  45981405 aaggcttaaatatgtaaaacgtccttgtaatttcgcgtgtttttgcaaatcgtccttgtatctttttttgtttcaaaatcatccttgtaagttactagcc 45981504  T
Q  410 ttttgcaaatggtccttcccgttaactcccgttacaaaaacgactaggtggcagacggagacacacgtggcttactgtgacttggcaaaag 500  Q
     ||||||| | |||| ||||||||||||||||||||||||||    ||| ||||||||||||||||| |||  | ||||| ||||||||||    
T  45981505 gtttgcaattcgtccctcccgttaactcccgttacaaaaacgttgtggttgcagacggagacacacgcggcgaagtgtgagttggcaaaag 45981595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 311 - 386
Target Start/End: Original strand, 8391399 - 8391475
Alignment:
Q  311 aaggtttaaatatgcaaaccgtccctgtaattttgcgcatttttgcaattcgtccttgtatc-ttttttgtttcaaa 386  Q
    |||| ||||||||| ||| |||||||||||||| |||  ||||||||| ||||||||||||| ||||||||||||||    
T  8391399 aaggcttaaatatgtaaaacgtccctgtaatttcgcgtgtttttgcaaatcgtccttgtatctttttttgtttcaaa 8391475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 312 - 343
Target Start/End: Complemental strand, 3990905 - 3990874
Alignment:
Q  312 aggtttaaatatgcaaaccgtccctgtaattt 343  Q
    ||||||||||||||||||||||||||||||||    
T  3990905 aggtttaaatatgcaaaccgtccctgtaattt 3990874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 313 - 343
Target Start/End: Complemental strand, 26052235 - 26052205
Alignment:
Q  313 ggtttaaatatgcaaaccgtccctgtaattt 343  Q
    |||||||||||||||||||||||||||||||    
T  26052235 ggtttaaatatgcaaaccgtccctgtaattt 26052205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 313 - 343
Target Start/End: Original strand, 54600133 - 54600163
Alignment:
Q  313 ggtttaaatatgcaaaccgtccctgtaattt 343  Q
    |||||||||||||||||||||||||||||||    
T  54600133 ggtttaaatatgcaaaccgtccctgtaattt 54600163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 316 - 500
Target Start/End: Original strand, 193594 - 193779
Alignment:
Q  316 ttaaatatgcaaaccgtccctgtaattttgcgcatttttgcaattcgtccttgtatctttttt-gtttcaaacctctccttgtaagcttttttcgttttg 414  Q
    ||||||||| ||| |||| ||||||||| |||  ||||||||| |||||| |||||||||||| ||||||||    |||||||||| |  |  |  ||||    
T  193594 ttaaatatgtaaaacgtctctgtaatttcgcgtgtttttgcaaatcgtccctgtatctttttttgtttcaaaatcatccttgtaagttaatagccgtttg 193693  T
Q  415 caaatggtccttcccgttaactcccgttacaaaaacgactaggtggcagacggagacacacgtggcttactgtgacttggcaaaag 500  Q
    ||| | |||| ||||||||||||||||||||||||||    ||||||||||||||||||||| |||  | ||||| ||||||||||    
T  193694 caattcgtccctcccgttaactcccgttacaaaaacgttgtggtggcagacggagacacacgcggcgaagtgtgagttggcaaaag 193779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 1e-21; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 316 - 500
Target Start/End: Original strand, 20587042 - 20587227
Alignment:
Q  316 ttaaatatgcaaaccgtccctgtaattttgcgcatttttgcaattcgtccttgtatctttttt-gtttcaaacctctccttgtaagcttttttcgttttg 414  Q
    ||||||||| ||| |||||||||||||| |||  ||||||||| |||||| |||||||||||| ||||||||    |||||||||| |  |  |  ||||    
T  20587042 ttaaatatgtaaaacgtccctgtaatttcgcgtgtttttgcaaatcgtccctgtatctttttttgtttcaaaatcatccttgtaagttactagccgtttg 20587141  T
Q  415 caaatggtccttcccgttaactcccgttacaaaaacgactaggtggcagacggagacacacgtggcttactgtgacttggcaaaag 500  Q
    ||| | |||| ||| ||||||||||||||||||||||    ||||||||||||||||||||| |||  | ||||| ||||||||||    
T  20587142 caattcgtccctcctgttaactcccgttacaaaaacgttgtggtggcagacggagacacacgcggcgaagtgtgagttggcaaaag 20587227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 316 - 500
Target Start/End: Complemental strand, 20588515 - 20588330
Alignment:
Q  316 ttaaatatgcaaaccgtccctgtaattttgcgcatttttgcaattcgtccttgtatctttttt-gtttcaaacctctccttgtaagcttttt-tcgtttt 413  Q
    ||||||||| ||| |||||||||||||| |||  ||||||||| |||||  |||||||||||| ||||||||    |||||||||| |     ||||||     
T  20588515 ttaaatatgtaaaacgtccctgtaatttcgcgtgtttttgcaaatcgtctctgtatctttttttgtttcaaaatcatccttgtaagttgccaatcgttt- 20588417  T
Q  414 gcaaatggtccttcccgttaactcccgttacaaaaacgactaggtggcagacggagacacacgtggcttactgtgacttggcaaaag 500  Q
    |||| | |||| ||||||||||||||||||||||||||    ||||||||||| ||||||||||||   | ||||| ||||||||||    
T  20588416 gcaattcgtccctcccgttaactcccgttacaaaaacgttgtggtggcagacgtagacacacgtggtgaagtgtgagttggcaaaag 20588330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 311 - 378
Target Start/End: Original strand, 28563374 - 28563441
Alignment:
Q  311 aaggtttaaatatgcaaaccgtccctgtaattttgcgcatttttgcaattcgtccttgtatctttttt 378  Q
    |||| ||||||||| ||| |||||||||||||| |||  ||||||   ||||||||||||||||||||    
T  28563374 aaggcttaaatatgtaaatcgtccctgtaatttggcgtgtttttggttttcgtccttgtatctttttt 28563441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 8e-20; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 316 - 500
Target Start/End: Original strand, 28848561 - 28848742
Alignment:
Q  316 ttaaatatgcaaaccgtccctgtaattttgcgcatttttgcaattcgtccttgtatcttttttgtttcaaacctctccttgtaagcttttttcgttttgc 415  Q
    ||||||||| ||| |||||||||||||| |||  ||||||||| |||||| ||||||||||||||||||||    || |  |||| |  |  |  |||||    
T  28848561 ttaaatatgtaaaacgtccctgtaatttcgcgtgtttttgcaaatcgtccctgtatcttttttgtttcaaa---atcatcctaagttactagccgtttgc 28848657  T
Q  416 aaatggtccttcccgttaactcccgttacaaaaacgactaggtggcagacggagacacacgtggcttactgtgacttggcaaaag 500  Q
    || | |||| ||||||||||||||||||||||||||    ||||||||||||||||||||| |||  | ||||| ||||||||||    
T  28848658 aattcgtccctcccgttaactcccgttacaaaaacgttgtggtggcagacggagacacacgcggcgaagtgtgagttggcaaaag 28848742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 316 - 500
Target Start/End: Complemental strand, 43546786 - 43546601
Alignment:
Q  316 ttaaatatgcaaaccgtccctgtaattttgcgcatttttgcaattcgtccttgtatctttttt-gtttcaaacctctccttgtaagcttttttcgttttg 414  Q
    ||||||||| ||| |||||||||||||| |||  ||||||||| |||||| ||||| |||||| |||| |||    |||||||||| |  |  |  ||||    
T  43546786 ttaaatatgtaaaacgtccctgtaatttcgcgtgtttttgcaaatcgtccctgtatttttttttgttttaaaatcatccttgtaagttactagccgtttg 43546687  T
Q  415 caaatggtccttcccgttaactcccgttacaaaaacgactaggtggcagacggagacacacgtggcttactgtgacttggcaaaag 500  Q
    ||| | |||| |||||||||||||||||||||||||     ||||||||||||||||||||| |||  | ||||| ||||||||||    
T  43546686 caattcgtccctcccgttaactcccgttacaaaaacattgtggtggcagacggagacacacgcggcgaagtgtgagttggcaaaag 43546601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 319 - 500
Target Start/End: Original strand, 43545348 - 43545530
Alignment:
Q  319 aatatgcaaaccgtccctgtaattttgcgcatttttgcaattcgtccttgtatc-ttttttgtttcaaacctctccttgtaagct-tttttcgttttgca 416  Q
    |||||||||| |||||||||||||| |||  ||||||||| |||||| |||||| ||||||||||||||    ||||| |||| |     ||| ||||||    
T  43545348 aatatgcaaaacgtccctgtaatttcgcgtgtttttgcaaatcgtccctgtatctttttttgtttcaaaatcatccttctaagttgccaatcg-tttgca 43545446  T
Q  417 aatggtccttcccgttaactcccgttacaaaaacgactaggtggcagacggagacacacgtggcttactgtgacttggcaaaag 500  Q
    | |  ||| ||||||||||||||||||||||||||    ||||||||||||||||||| ||||   | ||||| ||||||||||    
T  43545447 attcatccctcccgttaactcccgttacaaaaacgttgtggtggcagacggagacacatgtggtgaagtgtgagttggcaaaag 43545530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 311 - 386
Target Start/End: Original strand, 25008090 - 25008166
Alignment:
Q  311 aaggtttaaatatgcaaaccgtccctgtaattttgcgcatttttgcaattcgtccttgtatc-ttttttgtttcaaa 386  Q
    |||| ||||||||| ||| |||||||||||||| |||  ||||||||| |||||| |||||| ||||||||||||||    
T  25008090 aaggcttaaatatgtaaaacgtccctgtaatttcgcgtgtttttgcaaatcgtccctgtatctttttttgtttcaaa 25008166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 319 - 500
Target Start/End: Complemental strand, 25009538 - 25009356
Alignment:
Q  319 aatatgcaaaccgtccctgtaattttgcgcatttttgcaattcgtccttgtatctt-ttttgtttcaaacctctccttgtaagct-tttttcgttttgca 416  Q
    |||||| ||| |||||||||||||| |||  ||||||||| |||||| |||||||| ||||||||||||    |||||||||| |     ||| ||||||    
T  25009538 aatatgtaaaacgtccctgtaatttcgcgtgtttttgcaaatcgtccctgtatctttttttgtttcaaaatcatccttgtaagttgccaatcg-tttgca 25009440  T
Q  417 aatggtccttcccgttaactcccgttacaaaaacgactaggtggcagacggagacacacgtggcttactgtgacttggcaaaag 500  Q
    | |  ||| |||||||||||| |||||||||||||    |||||||||||||||||||| |||   | ||||| ||||||||||    
T  25009439 attcatccctcccgttaactctcgttacaaaaacgttgtggtggcagacggagacacacatggtgaagtgtgagttggcaaaag 25009356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 307 - 378
Target Start/End: Complemental strand, 31393724 - 31393653
Alignment:
Q  307 ttttaaggtttaaatatgcaaaccgtccctgtaattttgcgcatttttgcaattcgtccttgtatctttttt 378  Q
    |||||||| ||||||||| ||| |||||||||||||| |||  ||||||   ||||||||||||||||||||    
T  31393724 ttttaaggcttaaatatgtaaatcgtccctgtaatttggcgtgtttttggttttcgtccttgtatctttttt 31393653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 309 - 378
Target Start/End: Original strand, 40028453 - 40028522
Alignment:
Q  309 ttaaggtttaaatatgcaaaccgtccctgtaattttgcgcatttttgcaattcgtccttgtatctttttt 378  Q
    |||||||||||||||| ||| |||||||||||||| |||  ||||||   ||||||| ||||||||||||    
T  40028453 ttaaggtttaaatatgtaaatcgtccctgtaatttggcgtgtttttggttttcgtccctgtatctttttt 40028522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 319 - 386
Target Start/End: Complemental strand, 28850021 - 28849953
Alignment:
Q  319 aatatgcaaaccgtccctgtaattttgcgcatttttgcaattcgtccttgtatctt-ttttgtttcaaa 386  Q
    |||||||||| ||||||||||| || |||  ||||||||| |||||| |||||||| ||||||||||||    
T  28850021 aatatgcaaaacgtccctgtaacttcgcgtgtttttgcaaatcgtccctgtatctttttttgtttcaaa 28849953  T

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Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 310 - 343
Target Start/End: Original strand, 23966312 - 23966345
Alignment:
Q  310 taaggtttaaatatgcaaaccgtccctgtaattt 343  Q
    ||||| ||||||||||||||||||||||||||||    
T  23966312 taaggcttaaatatgcaaaccgtccctgtaattt 23966345  T

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Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 435 - 500
Target Start/End: Original strand, 25008205 - 25008270
Alignment:
Q  435 ctcccgttacaaaaacgactaggtggcagacggagacacacgtggcttactgtgacttggcaaaag 500  Q
    |||||||||||||||||    ||||||||||| |||||||||||||  | ||||| ||||||||||    
T  25008205 ctcccgttacaaaaacgttgtggtggcagacgaagacacacgtggcgaagtgtgagttggcaaaag 25008270  T

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Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 435 - 500
Target Start/End: Complemental strand, 28849914 - 28849849
Alignment:
Q  435 ctcccgttacaaaaacgactaggtggcagacggagacacacgtggcttactgtgacttggcaaaag 500  Q
    |||||||||||||||||    ||||||||||||||||||||||||   | ||||| ||||||||||    
T  28849914 ctcccgttacaaaaacgttgtggtggcagacggagacacacgtggtgaagtgtgagttggcaaaag 28849849  T

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Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 310 - 343
Target Start/End: Complemental strand, 43901656 - 43901623
Alignment:
Q  310 taaggtttaaatatgcaaaccgtccctgtaattt 343  Q
    ||||||||||||||||||||||| ||||||||||    
T  43901656 taaggtttaaatatgcaaaccgttcctgtaattt 43901623  T

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Target: scaffold0524 (Bit Score: 49; Significance: 1e-18; HSPs: 2)
Name: scaffold0524
Description:

Target: scaffold0524; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 319 - 521
Target Start/End: Complemental strand, 9122 - 8919
Alignment:
Q  319 aatatgcaaaccgtccctgtaattttgcgcatttttgcaattcgtccttgtatctt-ttttgtttcaaacctctccttgtaagct-tttttcgttttgca 416  Q
    |||||||||| ||||||||||||||||||  ||||||||| |||||| |||||||| |||||||||| |    |||||||||| |     ||| ||||||    
T  9122 aatatgcaaaacgtccctgtaattttgcgtgtttttgcaaatcgtccctgtatctttttttgtttcagaatcatccttgtaagttgccaatcg-tttgca 9024  T
Q  417 aatggtccttcccgttaactcccgttacaaaaacgactaggtggcagacggagacacacgtggcttactgtgacttggcaaaaggagtgttacgtgtcaa 516  Q
    | | |||| ||||||||||||||||||||||||||    ||||| ||||||||||||||||||   | ||||| ||||||||||   ||||| |||||||    
T  9023 attcgtccctcccgttaactcccgttacaaaaacgttgtggtggtagacggagacacacgtggtgaagtgtgagttggcaaaagctttgttatgtgtcaa 8924  T
Q  517 aagag 521  Q
     ||||    
T  8923 gagag 8919  T

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Target: scaffold0524; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 313 - 451
Target Start/End: Original strand, 7698 - 7837
Alignment:
Q  313 ggtttaaatatgcaaaccgtccctgtaattttgcgcatttttgcaattcgtccttgtatc-ttttttgtttcaaacctctccttgtaagcttttttcgtt 411  Q
    |||||||||||| ||| |||||||||||||| |||  ||||||||| |||||| |||||| |||||| |||||||    |||||||||| |  |  |  |    
T  7698 ggtttaaatatgtaaaacgtccctgtaatttcgcgtgtttttgcaaatcgtccctgtatctttttttatttcaaaatcatccttgtaagttactagccgt 7797  T
Q  412 ttgcaaatggtccttcccgttaactcccgttacaaaaacg 451  Q
    |||||| |  ||| ||||||||||||||||||||||||||    
T  7798 ttgcaattcatccctcccgttaactcccgttacaaaaacg 7837  T

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Target: scaffold0472 (Bit Score: 45; Significance: 3e-16; HSPs: 2)
Name: scaffold0472
Description:

Target: scaffold0472; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 310 - 500
Target Start/End: Original strand, 9017 - 9208
Alignment:
Q  310 taaggtttaaatatgcaaaccgtccctgtaattttgcgcatttttgcaattcgtccttgtatctttttt-gtttcaaacctctccttgtaagcttttt-t 407  Q
    ||||| || |||||||||| ||| |||||||||| |||   |||||||| ||||||||||||||||||| ||||||||    |||||||||| |     |    
T  9017 taaggctttaatatgcaaaacgttcctgtaatttcgcgtgattttgcaaatcgtccttgtatctttttttgtttcaaaatcatccttgtaagttgccaat 9116  T
Q  408 cgttttgcaaatggtccttcccgttaactcccgttacaaaaacgactaggtggcagacggagacacacgtggcttactgtgacttggcaaaag 500  Q
    ||||| |||| | |||| ||||||||||||||||||||||||||    |||||||||| |||||||||||||   | ||||| ||||||||||    
T  9117 cgttt-gcaattcgtccctcccgttaactcccgttacaaaaacgttgtggtggcagacagagacacacgtggtgaagtgtgagttggcaaaag 9208  T

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Target: scaffold0472; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 411 - 480
Target Start/End: Complemental strand, 10406 - 10337
Alignment:
Q  411 tttgcaaatggtccttcccgttaactcccgttacaaaaacgactaggtggcagacggagacacacgtggc 480  Q
    ||||||| | |||| ||||||||||||||||||||||||||    |||||||||||||||||||||||||    
T  10406 tttgcaattcgtccctcccgttaactcccgttacaaaaacgttgtggtggcagacggagacacacgtggc 10337  T

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Target: chr8 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 316 - 500
Target Start/End: Complemental strand, 35506984 - 35506799
Alignment:
Q  316 ttaaatatgcaaaccgtccctgtaattttgcgcatttttgcaattcgtccttgtatcttttttg-tttcaaacctctccttgtaagcttttttcgttttg 414  Q
    ||||||||| ||| ||||  ||||||||||||  ||||||||| |||||| | ||||||||||  |||||||    |||||||||| |  |  |  ||||    
T  35506984 ttaaatatgtaaaacgtctttgtaattttgcgtgtttttgcaaatcgtccctatatctttttttatttcaaaatcatccttgtaagttactagccgtttg 35506885  T
Q  415 caaatggtccttcccgttaactcccgttacaaaaacgactaggtggcagacggagacacacgtggcttactgtgacttggcaaaag 500  Q
    ||| | |||| ||||||||||||||||||||||||||    ||||||||||||||||||||  |||  | ||||| ||||||||||    
T  35506884 caattcgtccctcccgttaactcccgttacaaaaacgttgtggtggcagacggagacacacacggcgaagtgtgagttggcaaaag 35506799  T

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Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 310 - 500
Target Start/End: Original strand, 35505519 - 35505710
Alignment:
Q  310 taaggtttaaatatgcaaaccgtccctgtaattttgcgcatttttgcaattcgtccttgtatc-ttttttgtttcaaacctctccttgtaagct-ttttt 407  Q
    |||||||| |||||||||| |||||||||||||| |||  |||||| || |||||| |||||| ||||||||||||||    |||||||||| |     |    
T  35505519 taaggttttaatatgcaaaacgtccctgtaatttcgcgtgtttttgtaaatcgtccatgtatctttttttgtttcaaaatcatccttgtaagttgccaat 35505618  T
Q  408 cgttttgcaaatggtccttcccgttaactcccgttacaaaaacgactaggtggcagacggagacacacgtggcttactgtgacttggcaaaag 500  Q
    || ||||||| | |||| ||||||||||||||| |||||||| |    ||||||||||||||||| ||||||   | ||||| ||||||||||    
T  35505619 cg-tttgcaattcgtccctcccgttaactcccgctacaaaaatgttgtggtggcagacggagacagacgtggtgaagtgtgagttggcaaaag 35505710  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 311 - 343
Target Start/End: Original strand, 9898962 - 9898994
Alignment:
Q  311 aaggtttaaatatgcaaaccgtccctgtaattt 343  Q
    |||||||||||||||||||||||||||||||||    
T  9898962 aaggtttaaatatgcaaaccgtccctgtaattt 9898994  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 316 - 378
Target Start/End: Original strand, 25264343 - 25264405
Alignment:
Q  316 ttaaatatgcaaaccgtccctgtaattttgcgcatttttgcaattcgtccttgtatctttttt 378  Q
    ||||||||| ||| |||||||||||||| |||  ||||||   ||||||||||||||||||||    
T  25264343 ttaaatatgtaaatcgtccctgtaatttggcgtgtttttggttttcgtccttgtatctttttt 25264405  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 313 - 343
Target Start/End: Complemental strand, 26636318 - 26636288
Alignment:
Q  313 ggtttaaatatgcaaaccgtccctgtaattt 343  Q
    |||||||||||||||||||||||||||||||    
T  26636318 ggtttaaatatgcaaaccgtccctgtaattt 26636288  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 435 - 480
Target Start/End: Complemental strand, 35750804 - 35750759
Alignment:
Q  435 ctcccgttacaaaaacgactaggtggcagacggagacacacgtggc 480  Q
    |||||||||||||||||    |||||||||||||||||||||||||    
T  35750804 ctcccgttacaaaaacgttgtggtggcagacggagacacacgtggc 35750759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 310 - 343
Target Start/End: Complemental strand, 37587429 - 37587396
Alignment:
Q  310 taaggtttaaatatgcaaaccgtccctgtaattt 343  Q
    |||||||||||||||||||| |||||||||||||    
T  37587429 taaggtttaaatatgcaaactgtccctgtaattt 37587396  T

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Target: scaffold1889 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold1889
Description:

Target: scaffold1889; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 24 - 83
Target Start/End: Original strand, 335 - 394
Alignment:
Q  24 tgcatattgattcctaaatcaatttaattaccggtgtactagatccattaagaagttgaa 83  Q
    ||||||||||||||||||||||||||||||||  |||| ||||||||||| ||| |||||    
T  335 tgcatattgattcctaaatcaatttaattaccaatgtaatagatccattaggaaattgaa 394  T

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Target: scaffold0369 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0369
Description:

Target: scaffold0369; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 310 - 386
Target Start/End: Complemental strand, 8332 - 8255
Alignment:
Q  310 taaggtttaaatatgcaaaccgtccctgtaattttgcgcatttttgcaattcgtccttgtatc-ttttttgtttcaaa 386  Q
    ||||| || |||||||||| |||||||||||||| |||  ||||||||| |||||| | |||| ||||||||||||||    
T  8332 taaggcttgaatatgcaaaacgtccctgtaatttcgcgtgtttttgcaaatcgtccctatatctttttttgtttcaaa 8255  T

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Target: scaffold0141 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0141
Description:

Target: scaffold0141; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 303 - 343
Target Start/End: Original strand, 10296 - 10336
Alignment:
Q  303 aattttttaaggtttaaatatgcaaaccgtccctgtaattt 343  Q
    |||||||| ||| ||||||||||||||||||||||||||||    
T  10296 aatttttttaggcttaaatatgcaaaccgtccctgtaattt 10336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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