View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21248_high_7 (Length: 547)

Name: NF21248_high_7
Description: NF21248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21248_high_7
NF21248_high_7
[»] chr4 (7 HSPs)
chr4 (82-529)||(33393288-33393735)
chr4 (278-427)||(33125364-33125510)
chr4 (279-448)||(42502153-42502319)
chr4 (26-85)||(51834991-51835050)
chr4 (47-85)||(50341858-50341896)
chr4 (48-85)||(7852536-7852573)
chr4 (48-85)||(50427066-50427103)
[»] chr7 (2 HSPs)
chr7 (48-85)||(43234867-43234904)
chr7 (26-85)||(44537418-44537477)
[»] chr3 (3 HSPs)
chr3 (82-146)||(35407949-35408013)
chr3 (26-66)||(29083869-29083909)
chr3 (83-131)||(52516200-52516248)
[»] chr2 (2 HSPs)
chr2 (361-413)||(19984782-19984834)
chr2 (384-464)||(35730204-35730285)
[»] chr6 (1 HSPs)
chr6 (46-85)||(31855131-31855170)
[»] chr8 (3 HSPs)
chr8 (48-86)||(3146116-3146154)
chr8 (355-440)||(13512191-13512276)
chr8 (355-440)||(13601722-13601807)
[»] chr5 (4 HSPs)
chr5 (48-85)||(7968467-7968504)
chr5 (49-85)||(9276573-9276609)
chr5 (89-121)||(30700536-30700568)
chr5 (89-121)||(30734984-30735016)
[»] chr1 (1 HSPs)
chr1 (48-85)||(2864219-2864256)


Alignment Details
Target: chr4 (Bit Score: 293; Significance: 1e-164; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 82 - 529
Target Start/End: Complemental strand, 33393735 - 33393288
Alignment:
Q  82 gaaacttaatcccaacaatattatctctatgttcttgtttttctatttaattgcatagaccaatatacatacaaacaattcatctttccatactcaaaac 181  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||| ||||||||||||||||||||| |||||    
T  33393735 gaaacttaatctcaacaatattatctctatgttcttgtttttctatttaattgcatagaccaatatatgtactaacaattcatctttccatactaaaaac 33393636  T
Q  182 aatattagttgttgaaaga-tttggtatatcatgg-tccatgtgtata-gataatcttgaatccttatcttagacgccgctataaaaacagttcatcatt 278  Q
    ||||||||||||||||||| ||||||||||||||| |||||||||||  |||||||||| |||||||||||||||||| | ||||||||| |||||||||    
T  33393635 aatattagttgttgaaagactttggtatatcatgggtccatgtgtatctgataatcttgtatccttatcttagacgccaccataaaaacaattcatcatt 33393536  T
Q  279 cactaacacgaagtcctattctcatggaagtccatgttagcccgacccattaagtctgaatatccattttttacatatcccaaaaagtcttaggctattc 378  Q
    |||||||| ||||||||||||| ||||| |||||||||||| ||||||||||||  |||||| ||||||||   | |||||||||||||| || ||||||    
T  33393535 cactaacaagaagtcctattctaatggaggtccatgttagctcgacccattaagcttgaatacccattttt---acatcccaaaaagtctcagtctattc 33393439  T
Q  379 gcatgcttcaaaccttatgtctaatcttatatttccgacaacctccctttgctttcacttatatgaaaatagcccaagattttagtaaataatgctgtct 478  Q
     |||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||  |||||||||| ||||||||||||||||||| |||||    
T  33393438 tcatgcttcaaaccttatgtctaatcttatatttctggcaacctccctttgctttcacttatcggaaaatagcctaagattttagtaaataatggtgtct 33393339  T
Q  479 aaaatcgttcaatgaaatttacttcttgatcaatgaaattggtcatgagtt 529  Q
    || ||| ||||||||||||||||||||||||||||||||||||| ||||||    
T  33393338 aagatctttcaatgaaatttacttcttgatcaatgaaattggtcttgagtt 33393288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 278 - 427
Target Start/End: Complemental strand, 33125510 - 33125364
Alignment:
Q  278 tcactaacacgaagtcctattctcatggaagtccatgttagcccgacccattaagtctgaatatccattttttacatatcccaaaaagtcttaggctatt 377  Q
    ||||||||| ||| || |||||| |||| | |||||||||||  ||||||||||| |||| || ||||||||   | ||| |||||||||||||| ||||    
T  33125510 tcactaacatgaaatcttattcttatggcattccatgttagcttgacccattaagcctgattacccattttt---acatctcaaaaagtcttaggttatt 33125414  T
Q  378 cgcatgcttcaaaccttatgtctaatcttatatttccgacaacctccctt 427  Q
       |||||||||||||| ||| ||||||||||||| | ||||||| ||||    
T  33125413 ataatgcttcaaaccttgtgtttaatcttatattttcaacaacctacctt 33125364  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 279 - 448
Target Start/End: Complemental strand, 42502319 - 42502153
Alignment:
Q  279 cactaacacgaagtcctattctcatggaagtccatgttagcccgacccattaagtctgaatatccattttttacatatcccaaaaagtcttaggctattc 378  Q
    |||||||||||| | |||||||||||| | || |||||||| || ||||||||||| | ||| ||||||||     |||| |||||||||||  ||| |     
T  42502319 cactaacacgaaattctattctcatggcaatctatgttagctcgtcccattaagtccgcatacccatttttgc---atccgaaaaagtcttaccctactg 42502223  T
Q  379 gcatgcttcaaaccttatgtctaatcttatatttccgacaacctccctttgctttcacttatatgaaaat 448  Q
     ||||||||||| ||| | ||| |||| ||||||  |  || ||| |||||||||||||||| |||||||    
T  42502222 tcatgcttcaaatcttgtttcttatctgatatttatggaaatctcactttgctttcacttatttgaaaat 42502153  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 26 - 85
Target Start/End: Complemental strand, 51835050 - 51834991
Alignment:
Q  26 tgttaacgagtgcccccaatatactctttaagcactttaaatagtaaattttgaatgaaa 85  Q
    ||||||||||||  ||| | | ||||||||| |||||||||||||||||||| |||||||    
T  51835050 tgttaacgagtgttcccgagacactctttaaacactttaaatagtaaatttttaatgaaa 51834991  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 47 - 85
Target Start/End: Original strand, 50341858 - 50341896
Alignment:
Q  47 tactctttaagcactttaaatagtaaattttgaatgaaa 85  Q
    |||||||||||||||||| |||||||||||| |||||||    
T  50341858 tactctttaagcactttatatagtaaattttaaatgaaa 50341896  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 48 - 85
Target Start/End: Original strand, 7852536 - 7852573
Alignment:
Q  48 actctttaagcactttaaatagtaaattttgaatgaaa 85  Q
    ||||||||||||||||||||||||| |||| |||||||    
T  7852536 actctttaagcactttaaatagtaagtttttaatgaaa 7852573  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 48 - 85
Target Start/End: Complemental strand, 50427103 - 50427066
Alignment:
Q  48 actctttaagcactttaaatagtaaattttgaatgaaa 85  Q
    ||||||||| |||||||||||||||||||| |||||||    
T  50427103 actctttaaacactttaaatagtaaatttttaatgaaa 50427066  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 48 - 85
Target Start/End: Complemental strand, 43234904 - 43234867
Alignment:
Q  48 actctttaagcactttaaatagtaaattttgaatgaaa 85  Q
    |||||||||||||||||||||||||||||| |||||||    
T  43234904 actctttaagcactttaaatagtaaatttttaatgaaa 43234867  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 26 - 85
Target Start/End: Complemental strand, 44537477 - 44537418
Alignment:
Q  26 tgttaacgagtgcccccaatatactctttaagcactttaaatagtaaattttgaatgaaa 85  Q
    |||||||||||||||||     ||||||||||||||||||||||||| |||| |||||||    
T  44537477 tgttaacgagtgcccccggggcactctttaagcactttaaatagtaagtttttaatgaaa 44537418  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 82 - 146
Target Start/End: Original strand, 35407949 - 35408013
Alignment:
Q  82 gaaacttaatcccaacaatattatctctatgttcttgtttttctatttaattgcatagaccaata 146  Q
    |||||||||| ||||||||||||||| ||| ||||| |||   |||||||||||| |||||||||    
T  35407949 gaaacttaattccaacaatattatctttatattcttatttccttatttaattgcaaagaccaata 35408013  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 26 - 66
Target Start/End: Original strand, 29083869 - 29083909
Alignment:
Q  26 tgttaacgagtgcccccaatatactctttaagcactttaaa 66  Q
    |||||||||||||| |||  |||||||||||||||||||||    
T  29083869 tgttaacgagtgcctccaggatactctttaagcactttaaa 29083909  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 83 - 131
Target Start/End: Original strand, 52516200 - 52516248
Alignment:
Q  83 aaacttaatcccaacaatattatctctatgttcttgtttttctatttaa 131  Q
    ||||||||||| |||||||||||||||   ||||||||||||| |||||    
T  52516200 aaacttaatcctaacaatattatctctcaattcttgtttttctttttaa 52516248  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 361 - 413
Target Start/End: Complemental strand, 19984834 - 19984782
Alignment:
Q  361 aaaagtcttaggctattcgcatgcttcaaaccttatgtctaatcttatatttc 413  Q
    ||||||||| |||||||| |||||||||||| || ||||||| ||||||||||    
T  19984834 aaaagtcttgggctattctcatgcttcaaacattttgtctaaccttatatttc 19984782  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 384 - 464
Target Start/End: Complemental strand, 35730285 - 35730204
Alignment:
Q  384 cttcaaaccttatgtctaatcttatatttccgacaacctcccttt-gctttcacttatatgaaaatagcccaagattttagt 464  Q
    |||||||| || |||||| ||||||||||| | ||||||||||||  |||||||||||  ||| || ||| |||||||||||    
T  35730285 cttcaaacattgtgtctagtcttatatttctggcaacctccctttcactttcacttattggaagatcgcctaagattttagt 35730204  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 46 - 85
Target Start/End: Complemental strand, 31855170 - 31855131
Alignment:
Q  46 atactctttaagcactttaaatagtaaattttgaatgaaa 85  Q
    ||||||||||||||||||||||||||| |||| |||||||    
T  31855170 atactctttaagcactttaaatagtaagtttttaatgaaa 31855131  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 48 - 86
Target Start/End: Complemental strand, 3146154 - 3146116
Alignment:
Q  48 actctttaagcactttaaatagtaaattttgaatgaaac 86  Q
    ||||||||||||||||||||||||| |||| ||||||||    
T  3146154 actctttaagcactttaaatagtaagtttttaatgaaac 3146116  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 355 - 440
Target Start/End: Complemental strand, 13512276 - 13512191
Alignment:
Q  355 atcccaaaaagtcttaggctattcgcatgcttcaaaccttatgtctaatcttatatttccgacaacctccctttgctttcacttat 440  Q
    |||||||||||| ||||| ||||| |||| ||||||| || ||| ||| |||||| |||| |||||||  |||| |||||| ||||    
T  13512276 atcccaaaaagtattaggttattctcatgtttcaaacattttgtttaaccttataattccaacaacctaactttcctttcatttat 13512191  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 355 - 440
Target Start/End: Complemental strand, 13601807 - 13601722
Alignment:
Q  355 atcccaaaaagtcttaggctattcgcatgcttcaaaccttatgtctaatcttatatttccgacaacctccctttgctttcacttat 440  Q
    |||||||||||| ||||| ||||| |||| ||||||| || ||| ||| |||||| |||| |||||||  |||| |||||| ||||    
T  13601807 atcccaaaaagtattaggttattctcatgtttcaaacattttgtttaaccttataattccaacaacctaactttcctttcatttat 13601722  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 48 - 85
Target Start/End: Complemental strand, 7968504 - 7968467
Alignment:
Q  48 actctttaagcactttaaatagtaaattttgaatgaaa 85  Q
    ||||||||||||||||||||||||| |||| |||||||    
T  7968504 actctttaagcactttaaatagtaagtttttaatgaaa 7968467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 49 - 85
Target Start/End: Original strand, 9276573 - 9276609
Alignment:
Q  49 ctctttaagcactttaaatagtaaattttgaatgaaa 85  Q
    |||||||||||||||||||||||| |||| |||||||    
T  9276573 ctctttaagcactttaaatagtaagtttttaatgaaa 9276609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 89 - 121
Target Start/End: Original strand, 30700536 - 30700568
Alignment:
Q  89 aatcccaacaatattatctctatgttcttgttt 121  Q
    ||||||||||||||||||||| |||||||||||    
T  30700536 aatcccaacaatattatctctttgttcttgttt 30700568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 89 - 121
Target Start/End: Original strand, 30734984 - 30735016
Alignment:
Q  89 aatcccaacaatattatctctatgttcttgttt 121  Q
    ||||||||||||||||||||| |||||||||||    
T  30734984 aatcccaacaatattatctctttgttcttgttt 30735016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 48 - 85
Target Start/End: Complemental strand, 2864256 - 2864219
Alignment:
Q  48 actctttaagcactttaaatagtaaattttgaatgaaa 85  Q
    ||||||||||||||||||||||||| |||| |||||||    
T  2864256 actctttaagcactttaaatagtaagtttttaatgaaa 2864219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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