View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21248_low_10 (Length: 325)

Name: NF21248_low_10
Description: NF21248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21248_low_10
NF21248_low_10
[»] chr8 (34 HSPs)
chr8 (8-309)||(7977865-7978149)
chr8 (133-202)||(14961660-14961729)
chr8 (133-202)||(28014855-28014924)
chr8 (144-202)||(31812236-31812294)
chr8 (133-199)||(38212944-38213010)
chr8 (133-202)||(3306052-3306121)
chr8 (133-202)||(9580106-9580175)
chr8 (133-202)||(27874678-27874747)
chr8 (133-199)||(9825065-9825131)
chr8 (144-202)||(26834684-26834742)
chr8 (127-201)||(29642709-29642783)
chr8 (125-202)||(9801772-9801849)
chr8 (145-202)||(10129227-10129284)
chr8 (133-202)||(12132095-12132164)
chr8 (144-208)||(1203724-1203788)
chr8 (133-201)||(2161499-2161567)
chr8 (133-201)||(15198898-15198966)
chr8 (139-203)||(45006088-45006151)
chr8 (127-198)||(13327942-13328013)
chr8 (156-203)||(18567412-18567459)
chr8 (133-204)||(19343831-19343902)
chr8 (133-192)||(36967077-36967136)
chr8 (136-199)||(40225987-40226050)
chr8 (134-204)||(16445731-16445801)
chr8 (136-198)||(32186301-32186363)
chr8 (149-202)||(6818145-6818198)
chr8 (145-202)||(7140456-7140513)
chr8 (133-210)||(12189577-12189654)
chr8 (133-210)||(12434005-12434082)
chr8 (154-199)||(13496709-13496754)
chr8 (154-199)||(22838358-22838403)
chr8 (133-202)||(26363987-26364056)
chr8 (127-200)||(39701802-39701875)
chr8 (166-202)||(26682213-26682249)
[»] chr4 (32 HSPs)
chr4 (133-202)||(27019372-27019441)
chr4 (133-202)||(18882264-18882333)
chr4 (133-202)||(19468306-19468375)
chr4 (144-203)||(27362514-27362573)
chr4 (136-198)||(55813979-55814041)
chr4 (133-202)||(50352414-50352483)
chr4 (133-201)||(19450898-19450966)
chr4 (154-213)||(3085803-3085862)
chr4 (127-201)||(4329700-4329774)
chr4 (132-202)||(40049669-40049739)
chr4 (140-202)||(44916640-44916702)
chr4 (145-198)||(16667385-16667438)
chr4 (130-199)||(47326892-47326961)
chr4 (130-199)||(47341688-47341757)
chr4 (133-198)||(52391410-52391475)
chr4 (149-202)||(54495634-54495687)
chr4 (133-201)||(17409936-17410004)
chr4 (133-205)||(23438267-23438339)
chr4 (139-199)||(23545594-23545654)
chr4 (133-201)||(33632201-33632268)
chr4 (133-201)||(34941390-34941458)
chr4 (140-195)||(38222405-38222461)
chr4 (133-201)||(49181184-49181252)
chr4 (136-199)||(4779436-4779499)
chr4 (133-196)||(24684949-24685012)
chr4 (156-198)||(23553705-23553747)
chr4 (127-200)||(29190815-29190888)
chr4 (156-201)||(35999945-35999990)
chr4 (133-202)||(39876942-39877011)
chr4 (133-169)||(41970495-41970531)
chr4 (155-199)||(46803933-46803977)
chr4 (127-199)||(53961428-53961500)
[»] chr1 (26 HSPs)
chr1 (139-203)||(39310782-39310846)
chr1 (143-201)||(34802089-34802147)
chr1 (133-210)||(6180298-6180375)
chr1 (139-200)||(13321994-13322055)
chr1 (133-202)||(23576411-23576480)
chr1 (133-202)||(35512837-35512906)
chr1 (133-201)||(38812852-38812920)
chr1 (133-199)||(5057114-5057180)
chr1 (133-203)||(25465270-25465340)
chr1 (144-202)||(30172002-30172060)
chr1 (144-202)||(30187543-30187601)
chr1 (133-202)||(3168065-3168134)
chr1 (133-201)||(36490891-36490959)
chr1 (145-204)||(5875210-5875269)
chr1 (156-207)||(6569977-6570028)
chr1 (172-207)||(9872970-9873005)
chr1 (140-199)||(25532328-25532387)
chr1 (139-201)||(1502718-1502780)
chr1 (163-205)||(26767465-26767507)
chr1 (156-201)||(313884-313929)
chr1 (133-202)||(22167447-22167516)
chr1 (149-198)||(35438843-35438892)
chr1 (136-197)||(39781456-39781517)
chr1 (133-198)||(41676561-41676626)
chr1 (139-199)||(1366165-1366225)
chr1 (154-202)||(51382447-51382495)
[»] chr7 (23 HSPs)
chr7 (133-204)||(4969885-4969956)
chr7 (133-199)||(25709399-25709465)
chr7 (133-197)||(26037205-26037269)
chr7 (133-201)||(33343100-33343168)
chr7 (143-198)||(7899487-7899542)
chr7 (127-202)||(9332067-9332142)
chr7 (132-198)||(26050462-26050528)
chr7 (132-198)||(26059821-26059887)
chr7 (133-199)||(26300683-26300749)
chr7 (133-199)||(29398134-29398200)
chr7 (133-199)||(45501571-45501637)
chr7 (131-200)||(8091311-8091380)
chr7 (133-202)||(46290122-46290191)
chr7 (133-201)||(34270373-34270441)
chr7 (149-201)||(39757108-39757160)
chr7 (154-201)||(820539-820586)
chr7 (156-198)||(5833490-5833532)
chr7 (154-216)||(24462938-24463000)
chr7 (133-199)||(29692540-29692606)
chr7 (156-210)||(42750418-42750472)
chr7 (163-201)||(47457459-47457497)
chr7 (156-201)||(3561876-3561921)
chr7 (133-202)||(32117926-32117995)
[»] chr5 (17 HSPs)
chr5 (133-202)||(3398332-3398401)
chr5 (136-197)||(31567493-31567554)
chr5 (136-199)||(40980488-40980551)
chr5 (133-203)||(6863668-6863738)
chr5 (136-205)||(18841699-18841768)
chr5 (133-199)||(23995416-23995482)
chr5 (133-199)||(32019984-32020050)
chr5 (133-202)||(30839893-30839962)
chr5 (133-202)||(36597691-36597760)
chr5 (133-204)||(11636843-11636914)
chr5 (136-199)||(15240950-15241013)
chr5 (149-200)||(35151347-35151398)
chr5 (127-201)||(2795629-2795703)
chr5 (156-202)||(4047547-4047593)
chr5 (133-191)||(36474637-36474695)
chr5 (144-197)||(30893752-30893805)
chr5 (149-198)||(34578139-34578188)
[»] chr3 (20 HSPs)
chr3 (144-209)||(38389570-38389635)
chr3 (133-200)||(2566594-2566661)
chr3 (139-202)||(50204521-50204584)
chr3 (144-202)||(23523069-23523127)
chr3 (133-206)||(51401552-51401625)
chr3 (133-203)||(51618159-51618229)
chr3 (133-202)||(2571380-2571449)
chr3 (133-198)||(8165758-8165823)
chr3 (133-202)||(10307878-10307947)
chr3 (133-202)||(45983618-45983687)
chr3 (154-197)||(9247869-9247912)
chr3 (133-196)||(23803049-23803112)
chr3 (136-199)||(33474473-33474536)
chr3 (140-199)||(40930170-40930229)
chr3 (133-198)||(51567821-51567883)
chr3 (144-202)||(12515471-12515529)
chr3 (133-203)||(42180164-42180234)
chr3 (156-201)||(3863464-3863509)
chr3 (133-198)||(8497421-8497486)
chr3 (144-200)||(36426408-36426464)
[»] chr6 (23 HSPs)
chr6 (133-201)||(34692466-34692534)
chr6 (127-200)||(31568215-31568288)
chr6 (144-203)||(6016979-6017038)
chr6 (144-199)||(10887152-10887207)
chr6 (141-200)||(29065424-29065483)
chr6 (141-200)||(29120277-29120336)
chr6 (154-204)||(3261211-3261261)
chr6 (133-203)||(28943765-28943835)
chr6 (141-199)||(29074438-29074496)
chr6 (141-199)||(29079202-29079260)
chr6 (141-199)||(29107011-29107069)
chr6 (133-199)||(30591163-30591229)
chr6 (133-202)||(17552584-17552653)
chr6 (149-205)||(12454193-12454249)
chr6 (133-201)||(14228124-14228192)
chr6 (144-204)||(33017847-33017907)
chr6 (149-200)||(29863301-29863352)
chr6 (137-199)||(4371955-4372017)
chr6 (133-199)||(27819627-27819693)
chr6 (144-201)||(18332686-18332743)
chr6 (133-198)||(31790917-31790982)
chr6 (154-209)||(2830670-2830726)
chr6 (154-202)||(13391808-13391856)
[»] chr2 (22 HSPs)
chr2 (133-201)||(43806472-43806540)
chr2 (133-202)||(4576323-4576392)
chr2 (136-197)||(26003348-26003409)
chr2 (133-201)||(9747429-9747497)
chr2 (133-209)||(15411612-15411688)
chr2 (139-202)||(8065241-8065304)
chr2 (145-202)||(38248417-38248474)
chr2 (139-199)||(7720233-7720293)
chr2 (136-199)||(5853463-5853526)
chr2 (156-203)||(6109524-6109571)
chr2 (127-198)||(8770887-8770958)
chr2 (136-199)||(9895127-9895190)
chr2 (127-202)||(16126556-16126631)
chr2 (136-199)||(16493532-16493595)
chr2 (139-202)||(24729574-24729637)
chr2 (133-203)||(7757782-7757852)
chr2 (133-202)||(5583555-5583624)
chr2 (145-202)||(12016790-12016847)
chr2 (133-202)||(25997999-25998068)
chr2 (133-202)||(29157826-29157895)
chr2 (133-202)||(43388478-43388547)
chr2 (167-203)||(25295849-25295885)
[»] scaffold0111 (2 HSPs)
scaffold0111 (133-199)||(41094-41160)
scaffold0111 (156-202)||(37111-37157)
[»] scaffold0128 (1 HSPs)
scaffold0128 (133-200)||(44293-44360)
[»] scaffold0011 (1 HSPs)
scaffold0011 (149-200)||(13213-13264)
[»] scaffold0727 (1 HSPs)
scaffold0727 (156-198)||(5826-5868)
[»] scaffold0061 (1 HSPs)
scaffold0061 (127-201)||(52777-52851)
[»] scaffold0017 (1 HSPs)
scaffold0017 (127-201)||(145783-145857)
[»] scaffold0229 (1 HSPs)
scaffold0229 (139-199)||(24527-24587)


Alignment Details
Target: chr8 (Bit Score: 221; Significance: 1e-121; HSPs: 34)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 8 - 309
Target Start/End: Original strand, 7977865 - 7978149
Alignment:
Q  8 aagcaaagggataataacatatagaggttagtacattctacagtatttgtggcaataatagatacaatgaaaacaagaggacacaatcaattaagtgtgt 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  7977865 aagcaaagggataataacatatagaggttagtacattctacagtatttgtggcaataatagatacaatgaaaacaagaggacacaatcatttaagtgtgt 7977964  T
Q  108 ctaaaactgatttgtacacaaacaaaagtttcaatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaaaaccctaaata 207  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||    
T  7977965 ctacaactgatttgtacacaaacaaaagtttcaatacaaaattaccattttaaactttttaacatttgcaaatttgcatatgatagaaaaaccctaaata 7978064  T
Q  208 aatcaatataaaacgagttcaagcaacattttcttctagtttagctataataataaatatatcatattaataatcgagtacattctcaaaaacggagaga 307  Q
    |||||| |||||||||||               ||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||    
T  7978065 aatcaacataaaacgagt---------------ttctagtttagctataataataaatatatc--attaataatcgagtacattctcaaaaacggagaga 7978147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 133 - 202
Target Start/End: Complemental strand, 14961729 - 14961660
Alignment:
Q  133 aagtttcaatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaaaaccct 202  Q
    ||||| |||||||||||||| ||||||| ||| ||| ||| |||||||||||| ||||||||||||||||    
T  14961729 aagttccaatacaaaattactattttaaacttcttagcatgtgcaaatttgcacatgatagaaaaaccct 14961660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 133 - 202
Target Start/End: Complemental strand, 28014924 - 28014855
Alignment:
Q  133 aagtttcaatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaaaaccct 202  Q
    ||||| |||||||||||| | ||||||| ||| ||||||| |||||||||||| ||||||||||||||||    
T  28014924 aagttccaatacaaaatttctattttaaacttcttaacatgtgcaaatttgcacatgatagaaaaaccct 28014855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 144 - 202
Target Start/End: Original strand, 31812236 - 31812294
Alignment:
Q  144 caaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaaaaccct 202  Q
    ||||||||||||||||| ||| |||| || |||||||||||| ||||||||||||||||    
T  31812236 caaaattaccattttaaacttcttaatatgtgcaaatttgcacatgatagaaaaaccct 31812294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 133 - 199
Target Start/End: Complemental strand, 38213010 - 38212944
Alignment:
Q  133 aagtttcaatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaaaac 199  Q
    ||||||||||| |||||| | ||||||| ||| ||||||| |||||||||||| |||||||||||||    
T  38213010 aagtttcaatataaaatttctattttaaacttcttaacatgtgcaaatttgcacatgatagaaaaac 38212944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 133 - 202
Target Start/End: Complemental strand, 3306121 - 3306052
Alignment:
Q  133 aagtttcaatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaaaaccct 202  Q
    |||||||||| |||| |||| |||||||  || ||||||| |||||||||||| ||||||||||||||||    
T  3306121 aagtttcaatgcaaagttactattttaaatttcttaacatgtgcaaatttgcacatgatagaaaaaccct 3306052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 133 - 202
Target Start/End: Complemental strand, 9580175 - 9580106
Alignment:
Q  133 aagtttcaatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaaaaccct 202  Q
    |||||||||||||||||| | ||||||| ||| ||||||| || ||||||||| |||||| |||||||||    
T  9580175 aagtttcaatacaaaatttctattttaaacttcttaacatgtgtaaatttgcacatgataaaaaaaccct 9580106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 133 - 202
Target Start/End: Complemental strand, 27874747 - 27874678
Alignment:
Q  133 aagtttcaatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaaaaccct 202  Q
    ||||| ||||||||||||   ||||||| ||| ||||||| |||||||||||| ||||||||||||||||    
T  27874747 aagttccaatacaaaatttgtattttaaacttcttaacatgtgcaaatttgcacatgatagaaaaaccct 27874678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 133 - 199
Target Start/End: Original strand, 9825065 - 9825131
Alignment:
Q  133 aagtttcaatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaaaac 199  Q
    ||||||||| |||||  |||||||||||| |||||||||| |||| |||| || |||||||||||||    
T  9825065 aagtttcaagacaaacctaccattttaatttttttaacatgtgcatatttacacatgatagaaaaac 9825131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 144 - 202
Target Start/End: Original strand, 26834684 - 26834742
Alignment:
Q  144 caaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaaaaccct 202  Q
    |||||||||||||||||  || |||| || |||||||||||| ||||||||||||||||    
T  26834684 caaaattaccattttaaatttcttaatatatgcaaatttgcacatgatagaaaaaccct 26834742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 127 - 201
Target Start/End: Original strand, 29642709 - 29642783
Alignment:
Q  127 aaacaaaagtttcaatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaaaaccc 201  Q
    ||||| ||||||||| ||||| ||||||||||||  |  ||| ||| |||||||||||| |||||||||||||||    
T  29642709 aaacacaagtttcaagacaaacttaccattttaaattccttatcatatgcaaatttgcacatgatagaaaaaccc 29642783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 125 - 202
Target Start/End: Original strand, 9801772 - 9801849
Alignment:
Q  125 acaaacaaaagtttcaatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaaaaccct 202  Q
    ||||||| |||||||||  |||| |||| | ||||| ||| ||||||| |||||||||||| ||||| ||||||||||    
T  9801772 acaaacataagtttcaagtcaaagttactactttaaacttcttaacatgtgcaaatttgcacatgattgaaaaaccct 9801849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 145 - 202
Target Start/End: Original strand, 10129227 - 10129284
Alignment:
Q  145 aaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaaaaccct 202  Q
    |||||||| | ||||| ||| ||||||| |||||||||||| ||||||||||||||||    
T  10129227 aaaattactactttaaacttcttaacatgtgcaaatttgcacatgatagaaaaaccct 10129284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 133 - 202
Target Start/End: Original strand, 12132095 - 12132164
Alignment:
Q  133 aagtttcaatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaaaaccct 202  Q
    ||||| ||||||||| |||| | |||||  || ||||||| ||||| |||||||||||||||||||||||    
T  12132095 aagttccaatacaaacttactactttaaatttcttaacatgtgcaagtttgcagatgatagaaaaaccct 12132164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 144 - 208
Target Start/End: Original strand, 1203724 - 1203788
Alignment:
Q  144 caaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaaaaccctaaataa 208  Q
    ||||||||| | ||||| ||| ||| ||| |||||||||||| ||||||||||||||||| ||||    
T  1203724 caaaattactactttaaacttcttatcatgtgcaaatttgcacatgatagaaaaaccctatataa 1203788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 133 - 201
Target Start/End: Original strand, 2161499 - 2161567
Alignment:
Q  133 aagtttcaatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaaaaccc 201  Q
    ||||| |||| |||| |||| |||||||  || ||||||| |||||||||||| |||||||||||||||    
T  2161499 aagttccaatgcaaagttactattttaaatttcttaacatgtgcaaatttgcacatgatagaaaaaccc 2161567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 133 - 201
Target Start/End: Complemental strand, 15198966 - 15198898
Alignment:
Q  133 aagtttcaatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaaaaccc 201  Q
    ||||| |||| |||| |||| |||| ||  |||||||||| |||||||||||| |||||||||||||||    
T  15198966 aagttacaatgcaaagttactatttaaaattttttaacatgtgcaaatttgcacatgatagaaaaaccc 15198898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 139 - 203
Target Start/End: Original strand, 45006088 - 45006151
Alignment:
Q  139 caatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaaaacccta 203  Q
    |||||||||||| | ||||||| ||| ||||||| |||||||||||  |||||||||||||||||    
T  45006088 caatacaaaatt-ctattttaaacttcttaacatgtgcaaatttgcttatgatagaaaaacccta 45006151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 127 - 198
Target Start/End: Complemental strand, 13328013 - 13327942
Alignment:
Q  127 aaacaaaagtttcaatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaaaa 198  Q
    ||||| |||||||||  |||| |||| | ||||| ||| ||||||| |||||||||||| ||||||||||||    
T  13328013 aaacacaagtttcaagtcaaagttactaatttaaacttcttaacatgtgcaaatttgcacatgatagaaaaa 13327942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 156 - 203
Target Start/End: Complemental strand, 18567459 - 18567412
Alignment:
Q  156 tttaatctttttaacatttgcaaatttgcagatgatagaaaaacccta 203  Q
    ||||| ||| ||||||| |||||||||||| |||||||||||||||||    
T  18567459 tttaaacttcttaacatgtgcaaatttgcacatgatagaaaaacccta 18567412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 133 - 204
Target Start/End: Complemental strand, 19343902 - 19343831
Alignment:
Q  133 aagtttcaatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaaaaccctaa 204  Q
    |||||||||  ||||||||| | ||||| | | ||||||| |||||||||||| |||||| |||||||||||    
T  19343902 aagtttcaagtcaaaattactactttaaacgtgttaacatgtgcaaatttgcacatgataaaaaaaccctaa 19343831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 133 - 192
Target Start/End: Complemental strand, 36967136 - 36967077
Alignment:
Q  133 aagtttcaatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgata 192  Q
    ||||||||||||||| || | ||||||| ||| ||||||| |||||||||||| ||||||    
T  36967136 aagtttcaatacaaagtttctattttaaacttcttaacatgtgcaaatttgcacatgata 36967077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 136 - 199
Target Start/End: Complemental strand, 40226050 - 40225987
Alignment:
Q  136 tttcaatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaaaac 199  Q
    ||||||| ||||||| | ||| ||| ||| ||||||| |||||||||||| |||||||||||||    
T  40226050 tttcaatgcaaaatttcaattataaacttcttaacatgtgcaaatttgcacatgatagaaaaac 40225987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 134 - 204
Target Start/End: Complemental strand, 16445801 - 16445731
Alignment:
Q  134 agtttcaatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaaaaccctaa 204  Q
    |||| |||||||||||| | ||||||| ||| |||| || |||||||||||| || |||||||||| ||||    
T  16445801 agttccaatacaaaatttctattttaaacttcttaatatgtgcaaatttgcacataatagaaaaactctaa 16445731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 136 - 198
Target Start/End: Original strand, 32186301 - 32186363
Alignment:
Q  136 tttcaatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaaaa 198  Q
    |||||||| |||||| | ||||||| ||| ||||||| |||||||||||| | ||||||||||    
T  32186301 tttcaatataaaatttctattttaaacttattaacatatgcaaatttgcacacgatagaaaaa 32186363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 202
Target Start/End: Original strand, 6818145 - 6818198
Alignment:
Q  149 ttaccattttaatctttttaacatttgcaaatttgcagatgatagaaaaaccct 202  Q
    |||| ||||||| ||| ||||||| | |||||||||| ||||||||||||||||    
T  6818145 ttactattttaaacttcttaacatgtacaaatttgcacatgatagaaaaaccct 6818198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 202
Target Start/End: Complemental strand, 7140513 - 7140456
Alignment:
Q  145 aaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaaaaccct 202  Q
    |||||||| | ||||| ||| |||| || |||||||||||| ||||||||||||||||    
T  7140513 aaaattactactttaaacttcttaatatgtgcaaatttgcacatgatagaaaaaccct 7140456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 133 - 210
Target Start/End: Complemental strand, 12189654 - 12189577
Alignment:
Q  133 aagtttcaatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaaaaccctaaataaat 210  Q
    ||||| ||||| ||| || | ||||||| ||| ||| ||| |||||||||||| |||||||||||||| ||| |||||    
T  12189654 aagttccaatataaagtttctattttaaacttcttatcatgtgcaaatttgcacatgatagaaaaaccttaattaaat 12189577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 133 - 210
Target Start/End: Complemental strand, 12434082 - 12434005
Alignment:
Q  133 aagtttcaatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaaaaccctaaataaat 210  Q
    ||||| ||||| ||| || | ||||||| ||| ||| ||| |||||||||||| |||||||||||||| ||| |||||    
T  12434082 aagttccaatataaagtttctattttaaacttcttatcatgtgcaaatttgcacatgatagaaaaaccttaattaaat 12434005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 199
Target Start/End: Complemental strand, 13496754 - 13496709
Alignment:
Q  154 attttaatctttttaacatttgcaaatttgcagatgatagaaaaac 199  Q
    ||||||| ||| ||||||| |||||||||||| |||||||||||||    
T  13496754 attttaaacttcttaacatgtgcaaatttgcacatgatagaaaaac 13496709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 199
Target Start/End: Original strand, 22838358 - 22838403
Alignment:
Q  154 attttaatctttttaacatttgcaaatttgcagatgatagaaaaac 199  Q
    ||||||| ||| ||||||| |||||||||||| |||||||||||||    
T  22838358 attttaaacttcttaacatgtgcaaatttgcacatgatagaaaaac 22838403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 133 - 202
Target Start/End: Complemental strand, 26364056 - 26363987
Alignment:
Q  133 aagtttcaatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaaaaccct 202  Q
    ||||| |||| |||| |||| |||||||  || |||||||  ||||||||||| ||||||||||||||||    
T  26364056 aagttccaatgcaaagttactattttaaatttcttaacatgcgcaaatttgcacatgatagaaaaaccct 26363987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 200
Target Start/End: Complemental strand, 39701875 - 39701802
Alignment:
Q  127 aaacaaaagtttcaatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaaaacc 200  Q
    ||||| || ||||||  |||| |||| | ||||| ||| ||||||| |||||||||||| ||||||||||||||    
T  39701875 aaacacaaatttcaagtcaaagttactactttaaacttgttaacatgtgcaaatttgcacatgatagaaaaacc 39701802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 166 - 202
Target Start/End: Original strand, 26682213 - 26682249
Alignment:
Q  166 ttaacatttgcaaatttgcagatgatagaaaaaccct 202  Q
    ||||||| |||||||||||| ||||||||||||||||    
T  26682213 ttaacatgtgcaaatttgcacatgatagaaaaaccct 26682249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 32)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 133 - 202
Target Start/End: Original strand, 27019372 - 27019441
Alignment:
Q  133 aagtttcaatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaaaaccct 202  Q
    |||||||||||||||||| | ||||||| ||||||||||| |||||||||||| ||||||||||||||||    
T  27019372 aagtttcaatacaaaatttctattttaaactttttaacatatgcaaatttgcacatgatagaaaaaccct 27019441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 133 - 202
Target Start/End: Complemental strand, 18882333 - 18882264
Alignment:
Q  133 aagtttcaatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaaaaccct 202  Q
    ||||| |||||||||||| | ||||||| ||| ||||||| |||||||||||| ||||||||||||||||    
T  18882333 aagttccaatacaaaatttctattttaaacttcttaacatgtgcaaatttgcacatgatagaaaaaccct 18882264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 133 - 202
Target Start/End: Original strand, 19468306 - 19468375
Alignment:
Q  133 aagtttcaatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaaaaccct 202  Q
    |||||||||||||||||| | ||||||| ||| ||||||| |||||||||||| || |||||||||||||    
T  19468306 aagtttcaatacaaaatttctattttaaacttcttaacatgtgcaaatttgcacataatagaaaaaccct 19468375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 144 - 203
Target Start/End: Original strand, 27362514 - 27362573
Alignment:
Q  144 caaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaaaacccta 203  Q
    ||||||||||| ||||| ||| ||||||| |||||||||||| |||||||||||||||||    
T  27362514 caaaattaccactttaaacttcttaacatgtgcaaatttgcacatgatagaaaaacccta 27362573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 136 - 198
Target Start/End: Original strand, 55813979 - 55814041
Alignment:
Q  136 tttcaatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaaaa 198  Q
    ||||||||||||||||  ||||||| ||||||||||| |||||||||||| |||||| |||||    
T  55813979 tttcaatacaaaattattattttaaactttttaacatgtgcaaatttgcatatgatacaaaaa 55814041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 133 - 202
Target Start/End: Original strand, 50352414 - 50352483
Alignment:
Q  133 aagtttcaatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaaaaccct 202  Q
    ||||| |||| ||||||||| |||||||  || ||||||| |||||||||||| ||||||||||||||||    
T  50352414 aagttccaatgcaaaattactattttaaatttcttaacatgtgcaaatttgcatatgatagaaaaaccct 50352483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 133 - 201
Target Start/End: Complemental strand, 19450966 - 19450898
Alignment:
Q  133 aagtttcaatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaaaaccc 201  Q
    ||||| |||||||||||| | ||||||| ||| ||||||| |||||||||||| || ||||||||||||    
T  19450966 aagttccaatacaaaatttctattttaaacttcttaacatgtgcaaatttgcacataatagaaaaaccc 19450898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 154 - 213
Target Start/End: Original strand, 3085803 - 3085862
Alignment:
Q  154 attttaatctttttaacatttgcaaatttgcagatgatagaaaaaccctaaataaatcaa 213  Q
    ||||||| ||| |||| || |||||||||||| |||||||||||||||||| ||||||||    
T  3085803 attttaaacttcttaaaatgtgcaaatttgcacatgatagaaaaaccctaactaaatcaa 3085862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 127 - 201
Target Start/End: Original strand, 4329700 - 4329774
Alignment:
Q  127 aaacaaaagtttcaatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaaaaccc 201  Q
    ||||| || ||||||  |||| |||| | ||||| ||||||||||| |||||||||||| |||||||||||||||    
T  4329700 aaacataaatttcaagtcaaagttactactttaaactttttaacatatgcaaatttgcacatgatagaaaaaccc 4329774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 132 - 202
Target Start/End: Original strand, 40049669 - 40049739
Alignment:
Q  132 aaagtttcaatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaaaaccct 202  Q
    |||||| |||| ||||||||| |||||||  || ||||||| |||||||||||| || |||||||||||||    
T  40049669 aaagttccaatgcaaaattactattttaaatttcttaacatgtgcaaatttgcacataatagaaaaaccct 40049739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 140 - 202
Target Start/End: Complemental strand, 44916702 - 44916640
Alignment:
Q  140 aatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaaaaccct 202  Q
    ||||||||||| | |||||||  ||||||| || |||||||||||| ||||||||||||||||    
T  44916702 aatacaaaatttctattttaaattttttaatatgtgcaaatttgcacatgatagaaaaaccct 44916640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 145 - 198
Target Start/End: Complemental strand, 16667438 - 16667385
Alignment:
Q  145 aaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaaaa 198  Q
    ||||||| |||||||| ||| ||||||| |||||||||||| ||||||||||||    
T  16667438 aaaattatcattttaaacttcttaacatgtgcaaatttgcacatgatagaaaaa 16667385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 130 - 199
Target Start/End: Complemental strand, 47326961 - 47326892
Alignment:
Q  130 caaaagtttcaatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaaaac 199  Q
    |||||||| |||  |||| |||||| ||||| ||| ||||||| |||||||||||| |||||||||||||    
T  47326961 caaaagttccaagtcaaagttaccactttaaacttcttaacatgtgcaaatttgcacatgatagaaaaac 47326892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 130 - 199
Target Start/End: Complemental strand, 47341757 - 47341688
Alignment:
Q  130 caaaagtttcaatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaaaac 199  Q
    |||||||| |||  |||| |||||| ||||| ||| ||||||| |||||||||||| |||||||||||||    
T  47341757 caaaagttccaagtcaaagttaccactttaaacttcttaacatgtgcaaatttgcacatgatagaaaaac 47341688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 133 - 198
Target Start/End: Original strand, 52391410 - 52391475
Alignment:
Q  133 aagtttcaatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaaaa 198  Q
    ||||| |||||||||||| | ||||||| ||| ||||||| ||||||||| || ||||||||||||    
T  52391410 aagttccaatacaaaatttctattttaaacttcttaacatgtgcaaatttacacatgatagaaaaa 52391475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 149 - 202
Target Start/End: Complemental strand, 54495687 - 54495634
Alignment:
Q  149 ttaccattttaatctttttaacatttgcaaatttgcagatgatagaaaaaccct 202  Q
    |||||| ||||| ||| ||||||| |||||||||||| ||||||||||||||||    
T  54495687 ttaccactttaaacttcttaacatgtgcaaatttgcacatgatagaaaaaccct 54495634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 133 - 201
Target Start/End: Original strand, 17409936 - 17410004
Alignment:
Q  133 aagtttcaatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaaaaccc 201  Q
    ||||| ||||||||| || | ||||||| ||| ||| ||| |||||||||||| |||||||||||||||    
T  17409936 aagttccaatacaaagtttctattttaaacttcttatcatgtgcaaatttgcacatgatagaaaaaccc 17410004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 133 - 205
Target Start/End: Original strand, 23438267 - 23438339
Alignment:
Q  133 aagtttcaatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaaaaccctaaa 205  Q
    ||||||||| ||||| |||| |||||||  || | ||||| |||||||||||| || ||||||||||||||||    
T  23438267 aagtttcaaaacaaagttactattttaaaattctcaacatgtgcaaatttgcacataatagaaaaaccctaaa 23438339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 139 - 199
Target Start/End: Original strand, 23545594 - 23545654
Alignment:
Q  139 caatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaaaac 199  Q
    ||||||||||||   ||||||| ||| ||||||| |||||||||||| |||||||||||||    
T  23545594 caatacaaaatttatattttaaacttattaacatgtgcaaatttgcacatgatagaaaaac 23545654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 133 - 201
Target Start/End: Complemental strand, 33632268 - 33632201
Alignment:
Q  133 aagtttcaatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaaaaccc 201  Q
    ||||||||||| ||| || | ||||||| ||||||||||| |||||||| ||| |||||||||||||||    
T  33632268 aagtttcaatataaattt-ctattttaaactttttaacatgtgcaaattcgcacatgatagaaaaaccc 33632201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 133 - 201
Target Start/End: Original strand, 34941390 - 34941458
Alignment:
Q  133 aagtttcaatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaaaaccc 201  Q
    ||||| |||| ||||||||| ||||||| ||| ||| ||| |||||||| ||| |||||||||||||||    
T  34941390 aagttccaatgcaaaattactattttaaacttcttatcatgtgcaaattcgcacatgatagaaaaaccc 34941458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 140 - 195
Target Start/End: Original strand, 38222405 - 38222461
Alignment:
Q  140 aatacaaaatt-accattttaatctttttaacatttgcaaatttgcagatgatagaa 195  Q
    ||||||||||| || |||||||| |||||||||| || |||||||||||||||||||    
T  38222405 aatacaaaatttacaattttaatttttttaacatgtgtaaatttgcagatgatagaa 38222461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 133 - 201
Target Start/End: Original strand, 49181184 - 49181252
Alignment:
Q  133 aagtttcaatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaaaaccc 201  Q
    ||||| ||||||||| |||| ||||| | ||| ||||||  |||||||||||| |||||||||||||||    
T  49181184 aagttacaatacaaatttactattttgaacttcttaacaggtgcaaatttgcacatgatagaaaaaccc 49181252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 136 - 199
Target Start/End: Complemental strand, 4779499 - 4779436
Alignment:
Q  136 tttcaatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaaaac 199  Q
    ||||||| ||||||| | ||| ||| ||| ||||||| |||||||||||| |||||||||||||    
T  4779499 tttcaatgcaaaatttcaattataaacttcttaacatgtgcaaatttgcacatgatagaaaaac 4779436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 133 - 196
Target Start/End: Original strand, 24684949 - 24685012
Alignment:
Q  133 aagtttcaatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaa 196  Q
    ||||| |||| ||||||| | ||||||| ||| ||||||| |||||||||||| ||||||||||    
T  24684949 aagttccaatgcaaaatttctattttaaacttcttaacatgtgcaaatttgcacatgatagaaa 24685012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 156 - 198
Target Start/End: Original strand, 23553705 - 23553747
Alignment:
Q  156 tttaatctttttaacatttgcaaatttgcagatgatagaaaaa 198  Q
    ||||| ||||||||||| |||||||||||| ||||||||||||    
T  23553705 tttaaactttttaacatgtgcaaatttgcacatgatagaaaaa 23553747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 200
Target Start/End: Complemental strand, 29190888 - 29190815
Alignment:
Q  127 aaacaaaagtttcaatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaaaacc 200  Q
    ||||| ||||| |||  |||| |||| | ||||| ||| ||||||| |||||||||||| ||||||||||||||    
T  29190888 aaacacaagttccaagtcaaagttactaatttaaacttcttaacatgtgcaaatttgcacatgatagaaaaacc 29190815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 201
Target Start/End: Complemental strand, 35999990 - 35999945
Alignment:
Q  156 tttaatctttttaacatttgcaaatttgcagatgatagaaaaaccc 201  Q
    ||||| ||| ||||||| |||||||||||| |||||||||||||||    
T  35999990 tttaaacttcttaacatgtgcaaatttgcacatgatagaaaaaccc 35999945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 133 - 202
Target Start/End: Original strand, 39876942 - 39877011
Alignment:
Q  133 aagtttcaatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaaaaccct 202  Q
    ||||| |||| |||| |||| |||||||  || ||||||| ||||||||| || ||||||||||||||||    
T  39876942 aagttccaatgcaaagttactattttaaatttcttaacatgtgcaaatttacacatgatagaaaaaccct 39877011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 133 - 169
Target Start/End: Original strand, 41970495 - 41970531
Alignment:
Q  133 aagtttcaatacaaaattaccattttaatctttttaa 169  Q
    |||||||||||||||||||| ||||||| ||||||||    
T  41970495 aagtttcaatacaaaattactattttaaactttttaa 41970531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 155 - 199
Target Start/End: Original strand, 46803933 - 46803977
Alignment:
Q  155 ttttaatctttttaacatttgcaaatttgcagatgatagaaaaac 199  Q
    |||||| |||||||| || |||||||||||| |||||||||||||    
T  46803933 ttttaaactttttaatatgtgcaaatttgcacatgatagaaaaac 46803977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 127 - 199
Target Start/End: Original strand, 53961428 - 53961500
Alignment:
Q  127 aaacaaaagtttcaatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaaaac 199  Q
    ||||| || ||||||  ||||||||| | ||||| ||| ||||||| |||||||||||| | |||||||||||    
T  53961428 aaacacaaatttcaagtcaaaattactaatttaaacttcttaacatgtgcaaatttgcacacgatagaaaaac 53961500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 139 - 203
Target Start/End: Complemental strand, 39310846 - 39310782
Alignment:
Q  139 caatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaaaacccta 203  Q
    |||||||||||| | ||||||| ||||||||||| |||||||||||| |||||||||||||||||    
T  39310846 caatacaaaatttctattttaaactttttaacatgtgcaaatttgcacatgatagaaaaacccta 39310782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 143 - 201
Target Start/End: Original strand, 34802089 - 34802147
Alignment:
Q  143 acaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaaaaccc 201  Q
    |||||||||||||||||| ||| ||||||| |||||||||||| |||||||||||||||    
T  34802089 acaaaattaccattttaaacttcttaacatgtgcaaatttgcacatgatagaaaaaccc 34802147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 133 - 210
Target Start/End: Original strand, 6180298 - 6180375
Alignment:
Q  133 aagtttcaatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaaaaccctaaataaat 210  Q
    ||||| ||||| |||||| | ||||||| ||| ||||||| |||||||||||| |||||||||||||||||| |||||    
T  6180298 aagttccaatataaaatttctattttaaacttcttaacatgtgcaaatttgcacatgatagaaaaaccctaattaaat 6180375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 139 - 200
Target Start/End: Original strand, 13321994 - 13322055
Alignment:
Q  139 caatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaaaacc 200  Q
    |||||||||||| | ||||||| ||| ||||||| |||||||||||| ||||||||||||||    
T  13321994 caatacaaaatttctattttaaacttcttaacatatgcaaatttgcacatgatagaaaaacc 13322055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 133 - 202
Target Start/End: Complemental strand, 23576480 - 23576411
Alignment:
Q  133 aagtttcaatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaaaaccct 202  Q
    |||||||||| |||| |||| |||||||  || ||||||| |||||||||||| ||||||||||||||||    
T  23576480 aagtttcaatgcaaagttactattttaaatttcttaacatgtgcaaatttgcacatgatagaaaaaccct 23576411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 133 - 202
Target Start/End: Original strand, 35512837 - 35512906
Alignment:
Q  133 aagtttcaatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaaaaccct 202  Q
    ||||| ||||| |||||| | ||||||| ||| ||||||| |||||||||||| ||||||||||||||||    
T  35512837 aagttccaatataaaatttctattttaaacttcttaacatgtgcaaatttgcacatgatagaaaaaccct 35512906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 133 - 201
Target Start/End: Original strand, 38812852 - 38812920
Alignment:
Q  133 aagtttcaatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaaaaccc 201  Q
    ||||||||||| |||||| | ||||| | ||| ||||||| |||||||||||| |||||||||||||||    
T  38812852 aagtttcaatataaaatttctattttgaacttcttaacatgtgcaaatttgcacatgatagaaaaaccc 38812920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 133 - 199
Target Start/End: Original strand, 5057114 - 5057180
Alignment:
Q  133 aagtttcaatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaaaac 199  Q
    |||||||||  |||| |||||| ||||| ||||| |||||||||||||||||| || ||||||||||    
T  5057114 aagtttcaagtcaaagttaccactttaaacttttgaacatttgcaaatttgcatataatagaaaaac 5057180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 133 - 203
Target Start/End: Original strand, 25465270 - 25465340
Alignment:
Q  133 aagtttcaatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaaaacccta 203  Q
    ||||| |||| |||| |||| ||||| | ||| ||||||| |||||||||||| |||||||||||||||||    
T  25465270 aagttccaatgcaaatttactattttgaacttcttaacatgtgcaaatttgcacatgatagaaaaacccta 25465340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 144 - 202
Target Start/End: Original strand, 30172002 - 30172060
Alignment:
Q  144 caaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaaaaccct 202  Q
    |||| |||||| ||||| ||| ||||||| |||||||||||| ||||||||||||||||    
T  30172002 caaagttaccactttaaacttcttaacatgtgcaaatttgcacatgatagaaaaaccct 30172060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 144 - 202
Target Start/End: Original strand, 30187543 - 30187601
Alignment:
Q  144 caaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaaaaccct 202  Q
    |||| |||||| ||||| ||| ||||||| |||||||||||| ||||||||||||||||    
T  30187543 caaagttaccactttaaacttcttaacatgtgcaaatttgcacatgatagaaaaaccct 30187601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 133 - 202
Target Start/End: Complemental strand, 3168134 - 3168065
Alignment:
Q  133 aagtttcaatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaaaaccct 202  Q
    ||||| |||||| ||| | | ||||||| ||||||||| | |||||||||||| ||||||||||||||||    
T  3168134 aagttccaatactaaaattctattttaaactttttaacgtgtgcaaatttgcacatgatagaaaaaccct 3168065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 133 - 201
Target Start/End: Original strand, 36490891 - 36490959
Alignment:
Q  133 aagtttcaatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaaaaccc 201  Q
    ||||| |||| |||| |||| ||||||| ||| ||||||| |||||||||||  |||||||||||||||    
T  36490891 aagttccaatgcaaagttactattttaaacttcttaacatgtgcaaatttgctcatgatagaaaaaccc 36490959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 145 - 204
Target Start/End: Complemental strand, 5875269 - 5875210
Alignment:
Q  145 aaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaaaaccctaa 204  Q
    |||||| | ||||||| ||| ||||||| |||||||||||| |||||||||||| |||||    
T  5875269 aaaatttctattttaaacttcttaacatgtgcaaatttgcacatgatagaaaaatcctaa 5875210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 156 - 207
Target Start/End: Complemental strand, 6570028 - 6569977
Alignment:
Q  156 tttaatctttttaacatttgcaaatttgcagatgatagaaaaaccctaaata 207  Q
    ||||| ||| ||||||| |||||||||||| ||||||||||||||| |||||    
T  6570028 tttaaacttcttaacatgtgcaaatttgcacatgatagaaaaacccaaaata 6569977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 172 - 207
Target Start/End: Original strand, 9872970 - 9873005
Alignment:
Q  172 tttgcaaatttgcagatgatagaaaaaccctaaata 207  Q
    |||||||||||||| |||||||||||||||||||||    
T  9872970 tttgcaaatttgcacatgatagaaaaaccctaaata 9873005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 140 - 199
Target Start/End: Original strand, 25532328 - 25532387
Alignment:
Q  140 aatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaaaac 199  Q
    ||||||||||| |  |||||| |||||||||||  ||||||||||| |||||||||||||    
T  25532328 aatacaaaatttcttttttaaactttttaacatgcgcaaatttgcatatgatagaaaaac 25532387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 201
Target Start/End: Complemental strand, 1502780 - 1502718
Alignment:
Q  139 caatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaaaaccc 201  Q
    |||| |||| |||| |||||||  || ||||||| |||||||||||| |||||||||||||||    
T  1502780 caatgcaaagttactattttaaatttcttaacatgtgcaaatttgcacatgatagaaaaaccc 1502718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 163 - 205
Target Start/End: Complemental strand, 26767507 - 26767465
Alignment:
Q  163 tttttaacatttgcaaatttgcagatgatagaaaaaccctaaa 205  Q
    |||||||||||||||||||||||  ||||||||||||| ||||    
T  26767507 tttttaacatttgcaaatttgcacgtgatagaaaaaccataaa 26767465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 201
Target Start/End: Original strand, 313884 - 313929
Alignment:
Q  156 tttaatctttttaacatttgcaaatttgcagatgatagaaaaaccc 201  Q
    ||||| ||| ||||||| |||||||||||| |||||||||||||||    
T  313884 tttaaacttcttaacatgtgcaaatttgcacatgatagaaaaaccc 313929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 133 - 202
Target Start/End: Original strand, 22167447 - 22167516
Alignment:
Q  133 aagtttcaatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaaaaccct 202  Q
    ||||| ||||||||| || | ||||||| ||| ||| ||| |||||||||||| ||||||| ||||||||    
T  22167447 aagttccaatacaaagtttctattttaaacttcttatcatgtgcaaatttgcacatgataggaaaaccct 22167516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 198
Target Start/End: Original strand, 35438843 - 35438892
Alignment:
Q  149 ttaccattttaatctttttaacatttgcaaatttgcagatgatagaaaaa 198  Q
    ||||||||||||  || ||||||| |||||||||||| ||||||||||||    
T  35438843 ttaccattttaaatttcttaacatgtgcaaatttgcacatgatagaaaaa 35438892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 197
Target Start/End: Original strand, 39781456 - 39781517
Alignment:
Q  136 tttcaatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaaa 197  Q
    |||||||||||||||   |||| || ||||||||||| ||||||| |||| |||||||||||    
T  39781456 tttcaatacaaaatttttatttaaaactttttaacatgtgcaaatatgcacatgatagaaaa 39781517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 133 - 198
Target Start/End: Complemental strand, 41676626 - 41676561
Alignment:
Q  133 aagtttcaatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaaaa 198  Q
    |||||| ||||||||||||  ||||| |  || ||||||| |||||||||||| ||||||||||||    
T  41676626 aagttttaatacaaaattattattttgaatttcttaacatgtgcaaatttgcacatgatagaaaaa 41676561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 139 - 199
Target Start/End: Original strand, 1366165 - 1366225
Alignment:
Q  139 caatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaaaac 199  Q
    |||||||||||||| |||||||  || || |||| || ||||||||| |||||||||||||    
T  1366165 caatacaaaattactattttaaatttctttacatgtgtaaatttgcacatgatagaaaaac 1366225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 154 - 202
Target Start/End: Original strand, 51382447 - 51382495
Alignment:
Q  154 attttaatctttttaacatttgcaaatttgcagatgatagaaaaaccct 202  Q
    ||||||| ||| ||||||| |||||| ||||| ||||||||||||||||    
T  51382447 attttaaacttcttaacatgtgcaaagttgcacatgatagaaaaaccct 51382495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 5e-16; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 133 - 204
Target Start/End: Original strand, 4969885 - 4969956
Alignment:
Q  133 aagtttcaatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaaaaccctaa 204  Q
    ||||| |||||||||||| | ||||||| ||| ||||||| |||||||||||| ||||||||||||||||||    
T  4969885 aagttccaatacaaaatttctattttaaacttcttaacatgtgcaaatttgcacatgatagaaaaaccctaa 4969956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 133 - 199
Target Start/End: Complemental strand, 25709465 - 25709399
Alignment:
Q  133 aagtttcaatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaaaac 199  Q
    ||||| ||||||||| |||| ||||||| ||| ||||||| |||||||||||| |||||||||||||    
T  25709465 aagttccaatacaaagttactattttaaacttcttaacatgtgcaaatttgcacatgatagaaaaac 25709399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 133 - 197
Target Start/End: Original strand, 26037205 - 26037269
Alignment:
Q  133 aagtttcaatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaaa 197  Q
    ||||| |||||||||||| | ||||||| ||| ||||||| |||||||||||| |||||||||||    
T  26037205 aagttccaatacaaaatttctattttaaacttcttaacatctgcaaatttgcacatgatagaaaa 26037269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 133 - 201
Target Start/End: Original strand, 33343100 - 33343168
Alignment:
Q  133 aagtttcaatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaaaaccc 201  Q
    ||||| ||||||||| |||| |||||||  || ||||||| |||||||||||| |||||||||||||||    
T  33343100 aagttccaatacaaagttactattttaaatttcttaacatgtgcaaatttgcacatgatagaaaaaccc 33343168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 143 - 198
Target Start/End: Complemental strand, 7899542 - 7899487
Alignment:
Q  143 acaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaaaa 198  Q
    ||||| ||||||||||||  |||||||||| |||||||||||| ||||||||||||    
T  7899542 acaaacttaccattttaaattttttaacatgtgcaaatttgcacatgatagaaaaa 7899487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 127 - 202
Target Start/End: Original strand, 9332067 - 9332142
Alignment:
Q  127 aaacaaaagtttcaatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaaaaccct 202  Q
    ||||| |||||||||  |||| |||| | ||||| ||| ||||||| |||||||||||| ||||||||||||||||    
T  9332067 aaacacaagtttcaagtcaaagttactaatttaaacttcttaacatgtgcaaatttgcacatgatagaaaaaccct 9332142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 132 - 198
Target Start/End: Complemental strand, 26050528 - 26050462
Alignment:
Q  132 aaagtttcaatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaaaa 198  Q
    |||||| ||| ||||| ||||||||||||  || ||||||| |||||||||||| ||||||||||||    
T  26050528 aaagttacaagacaaatttaccattttaaatttcttaacatgtgcaaatttgcacatgatagaaaaa 26050462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 132 - 198
Target Start/End: Complemental strand, 26059887 - 26059821
Alignment:
Q  132 aaagtttcaatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaaaa 198  Q
    |||||| ||| ||||| ||||||||||||  || ||||||| |||||||||||| ||||||||||||    
T  26059887 aaagttacaagacaaatttaccattttaaatttcttaacatgtgcaaatttgcacatgatagaaaaa 26059821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 133 - 199
Target Start/End: Original strand, 26300683 - 26300749
Alignment:
Q  133 aagtttcaatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaaaac 199  Q
    |||||||||| |||| |||| ||||||| ||||||||||| |||||||||| | ||||| |||||||    
T  26300683 aagtttcaattcaaagttactattttaaactttttaacatgtgcaaatttgtacatgatggaaaaac 26300749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 133 - 199
Target Start/End: Complemental strand, 29398200 - 29398134
Alignment:
Q  133 aagtttcaatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaaaac 199  Q
    ||||| |||||||||||| | ||||||| ||| ||||||| |||||||||| | |||||||||||||    
T  29398200 aagttccaatacaaaatttctattttaaacttcttaacatgtgcaaatttgaacatgatagaaaaac 29398134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 133 - 199
Target Start/End: Original strand, 45501571 - 45501637
Alignment:
Q  133 aagtttcaatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaaaac 199  Q
    ||||| |||||||||||| | ||||||| ||| |||| || |||||||||||| |||||||||||||    
T  45501571 aagttccaatacaaaatttctattttaaacttcttaagatgtgcaaatttgcacatgatagaaaaac 45501637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 131 - 200
Target Start/End: Complemental strand, 8091380 - 8091311
Alignment:
Q  131 aaaagtttcaatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaaaacc 200  Q
    ||||||| |||| |||| |||| ||||||| ||| ||||||| || ||||||||| ||||||||||||||    
T  8091380 aaaagttacaatgcaaagttactattttaaacttcttaacatgtgtaaatttgcacatgatagaaaaacc 8091311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 133 - 202
Target Start/End: Original strand, 46290122 - 46290191
Alignment:
Q  133 aagtttcaatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaaaaccct 202  Q
    ||||| |||| |||| |||| |||||||  || ||||||| |||||||||||| ||||||||||||||||    
T  46290122 aagttccaatgcaaagttactattttaaatttcttaacatgtgcaaatttgcacatgatagaaaaaccct 46290191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 133 - 201
Target Start/End: Original strand, 34270373 - 34270441
Alignment:
Q  133 aagtttcaatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaaaaccc 201  Q
    ||||| |||| |||| |||| |||||||  || ||||||| |||||||||||| |||||||||||||||    
T  34270373 aagttccaatgcaaagttactattttaaatttcttaacatgtgcaaatttgcacatgatagaaaaaccc 34270441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 149 - 201
Target Start/End: Complemental strand, 39757160 - 39757108
Alignment:
Q  149 ttaccattttaatctttttaacatttgcaaatttgcagatgatagaaaaaccc 201  Q
    |||| ||||||| ||| ||||||| |||||||||||| |||||||||||||||    
T  39757160 ttactattttaaacttcttaacatgtgcaaatttgcacatgatagaaaaaccc 39757108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 154 - 201
Target Start/End: Complemental strand, 820586 - 820539
Alignment:
Q  154 attttaatctttttaacatttgcaaatttgcagatgatagaaaaaccc 201  Q
    ||||||| ||| ||||||| |||||||||||| |||||||||||||||    
T  820586 attttaaacttcttaacatgtgcaaatttgcacatgatagaaaaaccc 820539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 156 - 198
Target Start/End: Original strand, 5833490 - 5833532
Alignment:
Q  156 tttaatctttttaacatttgcaaatttgcagatgatagaaaaa 198  Q
    ||||| ||||||||||| |||||||||||| ||||||||||||    
T  5833490 tttaaactttttaacatgtgcaaatttgcacatgatagaaaaa 5833532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 154 - 216
Target Start/End: Complemental strand, 24463000 - 24462938
Alignment:
Q  154 attttaatctttttaacatttgcaaatttgcagatgatagaaaaaccctaaataaatcaatat 216  Q
    ||||||| ||| ||||||| |||||||||||| |||||||||| |||||| ||  ||||||||    
T  24463000 attttaaacttcttaacatgtgcaaatttgcacatgatagaaataccctacatttatcaatat 24462938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 133 - 199
Target Start/End: Complemental strand, 29692606 - 29692540
Alignment:
Q  133 aagtttcaatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaaaac 199  Q
    |||||| ||||| ||||| | ||||||| ||| ||||||| | |||||||||| |||||||||||||    
T  29692606 aagttttaataccaaatttctattttaaacttcttaacatgtacaaatttgcacatgatagaaaaac 29692540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 156 - 210
Target Start/End: Original strand, 42750418 - 42750472
Alignment:
Q  156 tttaatctttttaacatttgcaaatttgcagatgatagaaaaaccctaaataaat 210  Q
    ||||| ||| ||||||| |||||||||||| ||||||||||| |||||| |||||    
T  42750418 tttaaacttcttaacatatgcaaatttgcatatgatagaaaacccctaagtaaat 42750472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 163 - 201
Target Start/End: Complemental strand, 47457497 - 47457459
Alignment:
Q  163 tttttaacatttgcaaatttgcagatgatagaaaaaccc 201  Q
    |||||||||| |||||||||||| |||||||||||||||    
T  47457497 tttttaacatgtgcaaatttgcacatgatagaaaaaccc 47457459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 201
Target Start/End: Complemental strand, 3561921 - 3561876
Alignment:
Q  156 tttaatctttttaacatttgcaaatttgcagatgatagaaaaaccc 201  Q
    ||||| ||| ||||||| |||||||||||| |||||||||||||||    
T  3561921 tttaaacttcttaacatgtgcaaatttgcacatgatagaaaaaccc 3561876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 133 - 202
Target Start/End: Original strand, 32117926 - 32117995
Alignment:
Q  133 aagtttcaatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaaaaccct 202  Q
    ||||||||| | ||| || ||| |||||  || ||||||| |||||||||||| ||||||||||||||||    
T  32117926 aagtttcaagataaacttgccactttaaatttcttaacatgtgcaaatttgcacatgatagaaaaaccct 32117995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 133 - 202
Target Start/End: Original strand, 3398332 - 3398401
Alignment:
Q  133 aagtttcaatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaaaaccct 202  Q
    ||||| |||||||||||| | ||||||| ||| ||||||| |||||||||||| ||||||||||||||||    
T  3398332 aagttccaatacaaaatttctattttaaacttcttaacatgtgcaaatttgcacatgatagaaaaaccct 3398401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 136 - 197
Target Start/End: Complemental strand, 31567554 - 31567493
Alignment:
Q  136 tttcaatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaaa 197  Q
    |||||| ||||||||||||||||||  |||||||||| |||||||||||| |||||||||||    
T  31567554 tttcaagacaaaattaccattttaaattttttaacatgtgcaaatttgcatatgatagaaaa 31567493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 136 - 199
Target Start/End: Original strand, 40980488 - 40980551
Alignment:
Q  136 tttcaatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaaaac 199  Q
    ||||||||||||||| | ||||||| |||||||| || |||||||||||| |||||||||||||    
T  40980488 tttcaatacaaaatttctattttaaactttttaatatgtgcaaatttgcacatgatagaaaaac 40980551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 133 - 203
Target Start/End: Original strand, 6863668 - 6863738
Alignment:
Q  133 aagtttcaatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaaaacccta 203  Q
    ||||| ||||| ||| |||| |||||||  |||||||||| |||||||||||| |||||||||||||||||    
T  6863668 aagttccaatataaagttactattttaaattttttaacatgtgcaaatttgcacatgatagaaaaacccta 6863738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 136 - 205
Target Start/End: Complemental strand, 18841768 - 18841699
Alignment:
Q  136 tttcaatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaaaaccctaaa 205  Q
    ||||||||||||||| | ||||||| ||||||||||| |||||||||||| | |||| ||||||| ||||    
T  18841768 tttcaatacaaaatttctattttaaactttttaacatatgcaaatttgcacacgataaaaaaaccataaa 18841699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 133 - 199
Target Start/End: Complemental strand, 23995482 - 23995416
Alignment:
Q  133 aagtttcaatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaaaac 199  Q
    ||||||||||| |||||||| ||||||| ||| ||||||| | |||||||||| || ||||||||||    
T  23995482 aagtttcaatataaaattactattttaaacttcttaacatgtacaaatttgcacataatagaaaaac 23995416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 133 - 199
Target Start/End: Complemental strand, 32020050 - 32019984
Alignment:
Q  133 aagtttcaatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaaaac 199  Q
    ||||| ||| ||||| ||||||||||||  || ||||||| |||||||||||| |||||||||||||    
T  32020050 aagttccaagacaaacttaccattttaaatttcttaacatgtgcaaatttgcacatgatagaaaaac 32019984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 133 - 202
Target Start/End: Original strand, 30839893 - 30839962
Alignment:
Q  133 aagtttcaatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaaaaccct 202  Q
    ||||| |||| |||| |||| |||||||  || ||||||| |||||||||||| ||||||||||||||||    
T  30839893 aagttccaatgcaaagttactattttaaatttcttaacatgtgcaaatttgcacatgatagaaaaaccct 30839962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 133 - 202
Target Start/End: Original strand, 36597691 - 36597760
Alignment:
Q  133 aagtttcaatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaaaaccct 202  Q
    ||||| |||| |||| |||| |||||||  || ||||||| |||||||||||| ||||||||||||||||    
T  36597691 aagttccaatgcaaagttactattttaaatttcttaacatgtgcaaatttgcacatgatagaaaaaccct 36597760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 133 - 204
Target Start/End: Original strand, 11636843 - 11636914
Alignment:
Q  133 aagtttcaatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaaaaccctaa 204  Q
    |||||||||  |||| |||| | ||||| ||| ||| ||| |||||||||||| ||||||||||||||||||    
T  11636843 aagtttcaagtcaaagttactactttaaacttcttatcatgtgcaaatttgcacatgatagaaaaaccctaa 11636914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 136 - 199
Target Start/End: Complemental strand, 15241013 - 15240950
Alignment:
Q  136 tttcaatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaaaac 199  Q
    |||||||||||| |||  ||||| | ||||||||||| | |||||||||| |||||||||||||    
T  15241013 tttcaatacaaatttaatattttgaactttttaacatgtacaaatttgcacatgatagaaaaac 15240950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 149 - 200
Target Start/End: Original strand, 35151347 - 35151398
Alignment:
Q  149 ttaccattttaatctttttaacatttgcaaatttgcagatgatagaaaaacc 200  Q
    |||| ||||||| ||||||||||| |||||||||||| ||||| ||||||||    
T  35151347 ttactattttaaactttttaacatatgcaaatttgcacatgattgaaaaacc 35151398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 127 - 201
Target Start/End: Original strand, 2795629 - 2795703
Alignment:
Q  127 aaacaaaagtttcaatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaaaaccc 201  Q
    ||||| ||||| |||  |||| |||| | ||||| ||| ||||||| |||||||||||| |||||||||||||||    
T  2795629 aaacacaagttccaagtcaaagttactactttaaacttcttaacatgtgcaaatttgcacatgatagaaaaaccc 2795703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 156 - 202
Target Start/End: Original strand, 4047547 - 4047593
Alignment:
Q  156 tttaatctttttaacatttgcaaatttgcagatgatagaaaaaccct 202  Q
    ||||| ||| ||||||| |||||||||||| ||||||||||||||||    
T  4047547 tttaaacttcttaacatgtgcaaatttgcacatgatagaaaaaccct 4047593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 133 - 191
Target Start/End: Complemental strand, 36474695 - 36474637
Alignment:
Q  133 aagtttcaatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgat 191  Q
    |||||||||||||||||| | ||||||| |||||||| || ||||| |||||| |||||    
T  36474695 aagtttcaatacaaaatttctattttaaactttttaatatgtgcaattttgcacatgat 36474637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 197
Target Start/End: Original strand, 30893752 - 30893805
Alignment:
Q  144 caaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaaa 197  Q
    |||| |||| ||||||| ||| ||||||| |||||||||||| |||||||||||    
T  30893752 caaagttactattttaaacttcttaacatgtgcaaatttgcacatgatagaaaa 30893805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 198
Target Start/End: Original strand, 34578139 - 34578188
Alignment:
Q  149 ttaccattttaatctttttaacatttgcaaatttgcagatgatagaaaaa 198  Q
    |||| ||||||| ||||||||||| |||||||||||| |||||| |||||    
T  34578139 ttactattttaaactttttaacatgtgcaaatttgcacatgataaaaaaa 34578188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 144 - 209
Target Start/End: Original strand, 38389570 - 38389635
Alignment:
Q  144 caaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaaaaccctaaataaa 209  Q
    ||||||||||| ||||| ||| ||||||| |||||||||||| |||||||||||||||| ||||||    
T  38389570 caaaattaccactttaaacttcttaacatgtgcaaatttgcacatgatagaaaaacccttaataaa 38389635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 133 - 200
Target Start/End: Original strand, 2566594 - 2566661
Alignment:
Q  133 aagtttcaatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaaaacc 200  Q
    |||||||||||||||||||| |||||||  ||| |||||| || ||||||||| ||||||||||||||    
T  2566594 aagtttcaatacaaaattactattttaaattttctaacatgtgtaaatttgcacatgatagaaaaacc 2566661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 139 - 202
Target Start/End: Original strand, 50204521 - 50204584
Alignment:
Q  139 caatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaaaaccct 202  Q
    |||||||||||| | ||||||| ||| ||||||| |||||||||||| ||||||||||||||||    
T  50204521 caatacaaaatttctattttaaacttcttaacatgtgcaaatttgcacatgatagaaaaaccct 50204584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 144 - 202
Target Start/End: Original strand, 23523069 - 23523127
Alignment:
Q  144 caaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaaaaccct 202  Q
    ||||||||||| ||||| ||| ||||||| |||||||||||| ||||||||||||||||    
T  23523069 caaaattaccactttaaacttcttaacatgtgcaaatttgcacatgatagaaaaaccct 23523127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 133 - 206
Target Start/End: Original strand, 51401552 - 51401625
Alignment:
Q  133 aagtttcaatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaaaaccctaaat 206  Q
    ||||| |||||||||||| | ||||||| ||| ||||||| |||||||||| | || |||||||||||||||||    
T  51401552 aagttccaatacaaaatttctattttaaacttcttaacatgtgcaaatttgtacataatagaaaaaccctaaat 51401625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 133 - 203
Target Start/End: Original strand, 51618159 - 51618229
Alignment:
Q  133 aagtttcaatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaaaacccta 203  Q
    ||||| |||| |||| |||| |||| || ||| ||||||| |||||||||||| |||||||||||||||||    
T  51618159 aagttccaatgcaaagttacaatttgaaacttcttaacatgtgcaaatttgcacatgatagaaaaacccta 51618229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 133 - 202
Target Start/End: Original strand, 2571380 - 2571449
Alignment:
Q  133 aagtttcaatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaaaaccct 202  Q
    ||||| |||| |||| |||| |||||||  || ||||||| |||||||||||| ||||||||||||||||    
T  2571380 aagttccaatgcaaagttactattttaaatttcttaacatgtgcaaatttgcacatgatagaaaaaccct 2571449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 133 - 198
Target Start/End: Original strand, 8165758 - 8165823
Alignment:
Q  133 aagtttcaatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaaaa 198  Q
    ||||| ||||||||||||   ||||||| ||| ||||||| |||||||||||| ||||||||||||    
T  8165758 aagttccaatacaaaatttatattttaaacttcttaacatgtgcaaatttgcacatgatagaaaaa 8165823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 133 - 202
Target Start/End: Original strand, 10307878 - 10307947
Alignment:
Q  133 aagtttcaatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaaaaccct 202  Q
    ||||| |||| |||| |||| |||||||  || ||||||| |||||||||||| ||||||||||||||||    
T  10307878 aagttccaatgcaaatttactattttaaatttcttaacatgtgcaaatttgcacatgatagaaaaaccct 10307947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 133 - 202
Target Start/End: Original strand, 45983618 - 45983687
Alignment:
Q  133 aagtttcaatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaaaaccct 202  Q
    ||||||||||| |||||| | ||||||| ||| ||||| | |||||||||||| |||||| |||||||||    
T  45983618 aagtttcaatataaaatttctattttaaacttcttaacctgtgcaaatttgcacatgataaaaaaaccct 45983687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 154 - 197
Target Start/End: Original strand, 9247869 - 9247912
Alignment:
Q  154 attttaatctttttaacatttgcaaatttgcagatgatagaaaa 197  Q
    ||||||||| ||||||||| |||||||||||| |||||||||||    
T  9247869 attttaatcattttaacatatgcaaatttgcacatgatagaaaa 9247912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 133 - 196
Target Start/End: Complemental strand, 23803112 - 23803049
Alignment:
Q  133 aagtttcaatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaa 196  Q
    ||||| |||| ||||||| | ||||||| ||| ||||||| |||||||||||| ||||||||||    
T  23803112 aagttccaatgcaaaatttctattttaaacttcttaacatgtgcaaatttgcatatgatagaaa 23803049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 136 - 199
Target Start/End: Complemental strand, 33474536 - 33474473
Alignment:
Q  136 tttcaatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaaaac 199  Q
    ||||||| ||||||| | ||| ||| ||| ||||||| |||||||||||| |||||||||||||    
T  33474536 tttcaatgcaaaatttcaattataaacttcttaacatgtgcaaatttgcacatgatagaaaaac 33474473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 140 - 199
Target Start/End: Original strand, 40930170 - 40930229
Alignment:
Q  140 aatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaaaac 199  Q
    |||| |||||| | ||||||| ||| ||||||| |||||||||||| |||||||||||||    
T  40930170 aatataaaatttctattttaaacttcttaacatgtgcaaatttgcacatgatagaaaaac 40930229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 133 - 198
Target Start/End: Complemental strand, 51567883 - 51567821
Alignment:
Q  133 aagtttcaatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaaaa 198  Q
    |||||||||||||||||| | ||||||| |||   ||||| |||||||||||| ||||||||||||    
T  51567883 aagtttcaatacaaaatttctattttaaactt---aacatgtgcaaatttgcacatgatagaaaaa 51567821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 144 - 202
Target Start/End: Complemental strand, 12515529 - 12515471
Alignment:
Q  144 caaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaaaaccct 202  Q
    |||| |||| |||||||  |||||||||| ||||||||| || ||||||||||||||||    
T  12515529 caaagttactattttaaattttttaacatgtgcaaatttacacatgatagaaaaaccct 12515471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 133 - 203
Target Start/End: Original strand, 42180164 - 42180234
Alignment:
Q  133 aagtttcaatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaaaacccta 203  Q
    ||||| ||||||||||||   ||||||| ||| ||||||| ||||||||| || |||||||||||| ||||    
T  42180164 aagttccaatacaaaatttttattttaaacttcttaacatgtgcaaatttacacatgatagaaaaatccta 42180234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 201
Target Start/End: Original strand, 3863464 - 3863509
Alignment:
Q  156 tttaatctttttaacatttgcaaatttgcagatgatagaaaaaccc 201  Q
    ||||| ||| ||||||| |||||||||||| |||||||||||||||    
T  3863464 tttaaacttcttaacatgtgcaaatttgcacatgatagaaaaaccc 3863509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 133 - 198
Target Start/End: Complemental strand, 8497486 - 8497421
Alignment:
Q  133 aagtttcaatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaaaa 198  Q
    |||||||||| ||||||||| |||||||  ||||||||||   ||||||| || ||||||||||||    
T  8497486 aagtttcaatgcaaaattacaattttaaagtttttaacatggccaaatttacatatgatagaaaaa 8497421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 144 - 200
Target Start/End: Complemental strand, 36426464 - 36426408
Alignment:
Q  144 caaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaaaacc 200  Q
    ||||||||||| ||||| ||| ||||||| || |||||| || ||||||||||||||    
T  36426464 caaaattaccactttaaacttcttaacatgtgtaaatttacacatgatagaaaaacc 36426408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 23)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 133 - 201
Target Start/End: Original strand, 34692466 - 34692534
Alignment:
Q  133 aagtttcaatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaaaaccc 201  Q
    ||||| |||||||||||| | ||||||| ||| ||||||| |||||||||||| |||||||||||||||    
T  34692466 aagttccaatacaaaatttctattttaaacttcttaacatgtgcaaatttgcacatgatagaaaaaccc 34692534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 127 - 200
Target Start/End: Original strand, 31568215 - 31568288
Alignment:
Q  127 aaacaaaagtttcaatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaaaacc 200  Q
    ||||| |||||||||  |||| |||| | ||||| ||||||||||| |||||||||||| ||||||||||||||    
T  31568215 aaacacaagtttcaaatcaaagttactactttaaactttttaacatgtgcaaatttgcacatgatagaaaaacc 31568288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 144 - 203
Target Start/End: Original strand, 6016979 - 6017038
Alignment:
Q  144 caaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaaaacccta 203  Q
    |||| |||||| ||||| ||||||||||| |||||||||||| |||||||||||| ||||    
T  6016979 caaagttaccactttaaactttttaacatgtgcaaatttgcacatgatagaaaaatccta 6017038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 144 - 199
Target Start/End: Original strand, 10887152 - 10887207
Alignment:
Q  144 caaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaaaac 199  Q
    ||||||||||| ||||| ||| ||||||| |||||||||||| |||||||||||||    
T  10887152 caaaattaccactttaaacttcttaacatgtgcaaatttgcacatgatagaaaaac 10887207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 141 - 200
Target Start/End: Complemental strand, 29065483 - 29065424
Alignment:
Q  141 atacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaaaacc 200  Q
    |||||| ||||| ||||||| ||||||||||| ||||| |||||| ||||||||||||||    
T  29065483 atacaatattactattttaaactttttaacatgtgcaagtttgcacatgatagaaaaacc 29065424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 141 - 200
Target Start/End: Complemental strand, 29120336 - 29120277
Alignment:
Q  141 atacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaaaacc 200  Q
    |||||| ||||| ||||||| ||||||||||| ||||| |||||| ||||||||||||||    
T  29120336 atacaatattactattttaaactttttaacatgtgcaagtttgcacatgatagaaaaacc 29120277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 154 - 204
Target Start/End: Original strand, 3261211 - 3261261
Alignment:
Q  154 attttaatctttttaacatttgcaaatttgcagatgatagaaaaaccctaa 204  Q
    ||||||| ||||||||||| || ||||||||| ||||||||||||||||||    
T  3261211 attttaaactttttaacatgtgtaaatttgcacatgatagaaaaaccctaa 3261261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 133 - 203
Target Start/End: Complemental strand, 28943835 - 28943765
Alignment:
Q  133 aagtttcaatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaaaacccta 203  Q
    ||||| |||| |||| |||| |||||||  || ||||||| |||||||||||| |||||||||||||||||    
T  28943835 aagttccaatgcaaagttactattttaaatttcttaacatgtgcaaatttgcacatgatagaaaaacccta 28943765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 141 - 199
Target Start/End: Complemental strand, 29074496 - 29074438
Alignment:
Q  141 atacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaaaac 199  Q
    |||||| ||||| ||||||| ||||||||||| ||||| |||||| |||||||||||||    
T  29074496 atacaatattacaattttaaactttttaacatgtgcaagtttgcacatgatagaaaaac 29074438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 141 - 199
Target Start/End: Complemental strand, 29079260 - 29079202
Alignment:
Q  141 atacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaaaac 199  Q
    |||||| ||||| ||||||| ||||||||||| ||||| |||||| |||||||||||||    
T  29079260 atacaatattacaattttaaactttttaacatgtgcaagtttgcacatgatagaaaaac 29079202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 141 - 199
Target Start/End: Complemental strand, 29107069 - 29107011
Alignment:
Q  141 atacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaaaac 199  Q
    |||||| ||||| ||||||| ||||||||||| ||||| |||||| |||||||||||||    
T  29107069 atacaatattacaattttaaactttttaacatgtgcaagtttgcacatgatagaaaaac 29107011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 133 - 199
Target Start/End: Complemental strand, 30591229 - 30591163
Alignment:
Q  133 aagtttcaatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaaaac 199  Q
    ||||| |||| |||||||||||||| || ||| ||||||| || ||||||||| |||||||||||||    
T  30591229 aagttacaatgcaaaattaccatttaaaacttcttaacatgtgtaaatttgcacatgatagaaaaac 30591163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 133 - 202
Target Start/End: Complemental strand, 17552653 - 17552584
Alignment:
Q  133 aagtttcaatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaaaaccct 202  Q
    ||||| |||| || |||||| |||||||  || ||||||| |||||||||||| ||||||||||||||||    
T  17552653 aagttccaatgcataattactattttaaatttcttaacatgtgcaaatttgcacatgatagaaaaaccct 17552584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 149 - 205
Target Start/End: Original strand, 12454193 - 12454249
Alignment:
Q  149 ttaccattttaatctttttaacatttgcaaatttgcagatgatagaaaaaccctaaa 205  Q
    ||||||||||||  ||||||| || ||||||||| || |||||||||||||||||||    
T  12454193 ttaccattttaaattttttaaaatgtgcaaatttacatatgatagaaaaaccctaaa 12454249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 133 - 201
Target Start/End: Complemental strand, 14228192 - 14228124
Alignment:
Q  133 aagtttcaatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaaaaccc 201  Q
    ||||| |||| |||| |||| |||||||  || ||||||| |||||||||||| |||||||||||||||    
T  14228192 aagttccaatgcaaagttactattttaaatttcttaacatgtgcaaatttgcacatgatagaaaaaccc 14228124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 144 - 204
Target Start/End: Original strand, 33017847 - 33017907
Alignment:
Q  144 caaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaaaaccctaa 204  Q
    |||| |||| |||||||  |||||||||| |||||||||||| || |||||||||||||||    
T  33017847 caaagttactattttaaattttttaacatgtgcaaatttgcacataatagaaaaaccctaa 33017907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 149 - 200
Target Start/End: Complemental strand, 29863352 - 29863301
Alignment:
Q  149 ttaccattttaatctttttaacatttgcaaatttgcagatgatagaaaaacc 200  Q
    |||| ||||||| ||| ||||||| |||||||||||| ||||||||||||||    
T  29863352 ttactattttaaacttcttaacatgtgcaaatttgcacatgatagaaaaacc 29863301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 137 - 199
Target Start/End: Original strand, 4371955 - 4372017
Alignment:
Q  137 ttcaatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaaaac 199  Q
    |||||||||||||| | ||||||| ||| ||||||| || ||||||||  |||||||||||||    
T  4371955 ttcaatacaaaatttctattttaaacttcttaacatgtgtaaatttgcgcatgatagaaaaac 4372017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 133 - 199
Target Start/End: Complemental strand, 27819693 - 27819627
Alignment:
Q  133 aagtttcaatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaaaac 199  Q
    |||||| || |||||| ||| ||||||| ||| ||||||| |||||||||| | |||||||||||||    
T  27819693 aagttttaagacaaaaatacaattttaaacttcttaacatgtgcaaatttgtacatgatagaaaaac 27819627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 201
Target Start/End: Complemental strand, 18332743 - 18332686
Alignment:
Q  144 caaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaaaaccc 201  Q
    |||||||| || ||||| ||| ||||||| || ||||||||| |||||||||||||||    
T  18332743 caaaattatcactttaaacttcttaacatgtgaaaatttgcacatgatagaaaaaccc 18332686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 133 - 198
Target Start/End: Complemental strand, 31790982 - 31790917
Alignment:
Q  133 aagtttcaatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaaaa 198  Q
    ||||||||| ||||| || |||||||||  || |||| || |||||||||||| ||||||||||||    
T  31790982 aagtttcaagacaaacttgccattttaaatttcttaatatgtgcaaatttgcatatgatagaaaaa 31790917  T

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Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 154 - 209
Target Start/End: Complemental strand, 2830726 - 2830670
Alignment:
Q  154 attttaatctttttaacatttgcaaatttgcagatgatagaaaaaccc-taaataaa 209  Q
    ||||||| ||| ||||||| |||||||||| | ||||||||||||||| ||||||||    
T  2830726 attttaaacttcttaacatgtgcaaatttgtacatgatagaaaaacccataaataaa 2830670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 154 - 202
Target Start/End: Original strand, 13391808 - 13391856
Alignment:
Q  154 attttaatctttttaacatttgcaaatttgcagatgatagaaaaaccct 202  Q
    ||||||| ||| |||||||  ||||||||||| ||||||||||||||||    
T  13391808 attttaaacttcttaacatgcgcaaatttgcacatgatagaaaaaccct 13391856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 133 - 201
Target Start/End: Original strand, 43806472 - 43806540
Alignment:
Q  133 aagtttcaatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaaaaccc 201  Q
    |||||||||||||||||| | ||||||| ||||||||||| ||||||||| || | |||||||||||||    
T  43806472 aagtttcaatacaaaatttctattttaaactttttaacatgtgcaaatttacacacgatagaaaaaccc 43806540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 133 - 202
Target Start/End: Complemental strand, 4576392 - 4576323
Alignment:
Q  133 aagtttcaatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaaaaccct 202  Q
    |||||||||||||||||| | |||||||  || ||||||| ||| |||||||| ||||||||||||||||    
T  4576392 aagtttcaatacaaaatttctattttaaatttcttaacatatgcgaatttgcacatgatagaaaaaccct 4576323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 136 - 197
Target Start/End: Complemental strand, 26003409 - 26003348
Alignment:
Q  136 tttcaatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaaa 197  Q
    ||||||||||||||| | ||||||| ||| ||||||| |||||||||||| |||||||||||    
T  26003409 tttcaatacaaaatttctattttaaacttcttaacatgtgcaaatttgcacatgatagaaaa 26003348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 133 - 201
Target Start/End: Original strand, 9747429 - 9747497
Alignment:
Q  133 aagtttcaatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaaaaccc 201  Q
    ||||| ||| |||||||||| ||||||| ||| ||||||| || ||||||||| |||||||||||||||    
T  9747429 aagttccaagacaaaattactattttaaacttcttaacatgtgaaaatttgcacatgatagaaaaaccc 9747497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 133 - 209
Target Start/End: Complemental strand, 15411688 - 15411612
Alignment:
Q  133 aagtttcaatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaaaaccctaaataaa 209  Q
    ||||||||| ||||| |||| ||||||| ||| ||||||| |||||||||||| ||| ||||||| |||||| ||||    
T  15411688 aagtttcaagacaaagttactattttaaacttcttaacatgtgcaaatttgcacatgttagaaaacccctaagtaaa 15411612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 139 - 202
Target Start/End: Original strand, 8065241 - 8065304
Alignment:
Q  139 caatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaaaaccct 202  Q
    ||||| |||||| | ||||||| ||| ||||||| |||||||||||| ||||||||||||||||    
T  8065241 caatataaaatttctattttaaacttcttaacatgtgcaaatttgcacatgatagaaaaaccct 8065304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 145 - 202
Target Start/End: Complemental strand, 38248474 - 38248417
Alignment:
Q  145 aaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaaaaccct 202  Q
    |||||||| |||||||  || ||||||| |||||||||||| ||||||||||||||||    
T  38248474 aaaattactattttaaatttcttaacatgtgcaaatttgcacatgatagaaaaaccct 38248417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 139 - 199
Target Start/End: Original strand, 7720233 - 7720293
Alignment:
Q  139 caatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaaaac 199  Q
    |||||||||||| | || |||| ||||||||||  |||||||||||| |||||||||||||    
T  7720233 caatacaaaatttctatcttaaactttttaacacgtgcaaatttgcacatgatagaaaaac 7720293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 136 - 199
Target Start/End: Complemental strand, 5853526 - 5853463
Alignment:
Q  136 tttcaatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaaaac 199  Q
    ||||||| ||||||| | ||| ||| ||| ||||||| |||||||||||| |||||||||||||    
T  5853526 tttcaatgcaaaatttcaattataaacttcttaacatgtgcaaatttgcacatgatagaaaaac 5853463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 156 - 203
Target Start/End: Original strand, 6109524 - 6109571
Alignment:
Q  156 tttaatctttttaacatttgcaaatttgcagatgatagaaaaacccta 203  Q
    ||||| ||| ||||||| |||||||||||| |||||||||||||||||    
T  6109524 tttaaacttcttaacatgtgcaaatttgcacatgatagaaaaacccta 6109571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 127 - 198
Target Start/End: Complemental strand, 8770958 - 8770887
Alignment:
Q  127 aaacaaaagtttcaatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaaaa 198  Q
    |||||||| ||||||  ||||||||| | ||||| ||| ||||||| |||||||||||| |||||| |||||    
T  8770958 aaacaaaaatttcaagtcaaaattactactttaaacttcttaacatgtgcaaatttgcacatgataaaaaaa 8770887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 136 - 199
Target Start/End: Original strand, 9895127 - 9895190
Alignment:
Q  136 tttcaatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaaaac 199  Q
    |||||||| ||| |||  ||||||| ||| |||||||||| ||||||||| |||||||||||||    
T  9895127 tttcaatataaatttattattttaaacttcttaacatttgaaaatttgcatatgatagaaaaac 9895190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 127 - 202
Target Start/End: Complemental strand, 16126631 - 16126556
Alignment:
Q  127 aaacaaaagtttcaatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaaaaccct 202  Q
    ||||| |||||||||   ||| |||| | ||||| ||| ||||||| |||||||||||| ||||||||||||||||    
T  16126631 aaacacaagtttcaagttaaagttactactttaaacttcttaacatgtgcaaatttgcacatgatagaaaaaccct 16126556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 136 - 199
Target Start/End: Complemental strand, 16493595 - 16493532
Alignment:
Q  136 tttcaatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaaaac 199  Q
    ||||||| ||||||| | ||| ||| ||| ||||||| |||||||||||| |||||||||||||    
T  16493595 tttcaatgcaaaatttcaattataaacttcttaacatgtgcaaatttgcacatgatagaaaaac 16493532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 139 - 202
Target Start/End: Complemental strand, 24729637 - 24729574
Alignment:
Q  139 caatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaaaaccct 202  Q
    |||| |||| |||| |||||||  || ||||||| |||||||||||| ||||||||||||||||    
T  24729637 caatgcaaagttactattttaaatttcttaacatgtgcaaatttgcacatgatagaaaaaccct 24729574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 133 - 203
Target Start/End: Complemental strand, 7757852 - 7757782
Alignment:
Q  133 aagtttcaatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaaaacccta 203  Q
    ||||| |||| |||| |||| |||||||  || ||||||| || ||||||||| |||||||||||||||||    
T  7757852 aagttccaatgcaaagttactattttaaatttcttaacatgtgtaaatttgcacatgatagaaaaacccta 7757782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 133 - 202
Target Start/End: Complemental strand, 5583624 - 5583555
Alignment:
Q  133 aagtttcaatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaaaaccct 202  Q
    ||||| |||| |||| |||| |||||||  || ||||||| |||||||||||  ||||||||||||||||    
T  5583624 aagttccaatgcaaagttactattttaaatttcttaacatgtgcaaatttgcgcatgatagaaaaaccct 5583555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 202
Target Start/End: Original strand, 12016790 - 12016847
Alignment:
Q  145 aaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaaaaccct 202  Q
    |||||||| | ||||| ||| |||| || |||||||||||| ||||||||||||||||    
T  12016790 aaaattactactttaaacttcttaatatgtgcaaatttgcacatgatagaaaaaccct 12016847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 133 - 202
Target Start/End: Complemental strand, 25998068 - 25997999
Alignment:
Q  133 aagtttcaatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaaaaccct 202  Q
    ||||| |||| ||||||||   ||||||| |||||||||  ||||||||||||  |||||||||||||||    
T  25998068 aagttccaatgcaaaattaattttttaatttttttaacacatgcaaatttgcacgtgatagaaaaaccct 25997999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 133 - 202
Target Start/End: Complemental strand, 29157895 - 29157826
Alignment:
Q  133 aagtttcaatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaaaaccct 202  Q
    ||||| |||| |||| |||| |||| ||  || ||||||| |||||||||||| ||||||||||||||||    
T  29157895 aagttccaatgcaaagttactatttaaaatttcttaacatgtgcaaatttgcacatgatagaaaaaccct 29157826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 133 - 202
Target Start/End: Complemental strand, 43388547 - 43388478
Alignment:
Q  133 aagtttcaatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaaaaccct 202  Q
    ||||| |||| ||||  |||| |||| | ||| ||||||| |||||||||||| ||||||||||||||||    
T  43388547 aagttccaatgcaaacatacctttttgaacttcttaacatgtgcaaatttgcacatgatagaaaaaccct 43388478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 167 - 203
Target Start/End: Complemental strand, 25295885 - 25295849
Alignment:
Q  167 taacatttgcaaatttgcagatgatagaaaaacccta 203  Q
    |||||| |||||||||||| |||||||||||||||||    
T  25295885 taacatgtgcaaatttgcaaatgatagaaaaacccta 25295849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0111 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: scaffold0111
Description:

Target: scaffold0111; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 133 - 199
Target Start/End: Original strand, 41094 - 41160
Alignment:
Q  133 aagtttcaatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaaaac 199  Q
    |||||||||||||||||||  ||||||| ||| ||||||| | ||||||| || |||||||||||||    
T  41094 aagtttcaatacaaaattattattttaaacttcttaacatatacaaatttacacatgatagaaaaac 41160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0111; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 156 - 202
Target Start/End: Complemental strand, 37157 - 37111
Alignment:
Q  156 tttaatctttttaacatttgcaaatttgcagatgatagaaaaaccct 202  Q
    ||||| ||| ||||||| |||||||||||| ||||||||||||||||    
T  37157 tttaaacttcttaacatgtgcaaatttgcacatgatagaaaaaccct 37111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0128 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0128
Description:

Target: scaffold0128; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 133 - 200
Target Start/End: Complemental strand, 44360 - 44293
Alignment:
Q  133 aagtttcaatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaaaacc 200  Q
    |||||||||| |||| ||   ||||||| |||||||| || |||||||||||| ||||||||||||||    
T  44360 aagtttcaatgcaaagttgttattttaaactttttaatatgtgcaaatttgcacatgatagaaaaacc 44293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 149 - 200
Target Start/End: Original strand, 13213 - 13264
Alignment:
Q  149 ttaccattttaatctttttaacatttgcaaatttgcagatgatagaaaaacc 200  Q
    |||| ||||||| ||| ||||||| |||||||||||| ||||||||||||||    
T  13213 ttactattttaaacttcttaacatgtgcaaatttgcacatgatagaaaaacc 13264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0727 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0727
Description:

Target: scaffold0727; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 156 - 198
Target Start/End: Original strand, 5826 - 5868
Alignment:
Q  156 tttaatctttttaacatttgcaaatttgcagatgatagaaaaa 198  Q
    ||||| ||||||||||| |||||||||||| ||||||||||||    
T  5826 tttaaactttttaacatgtgcaaatttgcacatgatagaaaaa 5868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 127 - 201
Target Start/End: Complemental strand, 52851 - 52777
Alignment:
Q  127 aaacaaaagtttcaatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaaaaccc 201  Q
    ||||| ||||| |||  |||| |||| | ||||| ||| ||||||| |||||||||||| |||||||||||||||    
T  52851 aaacacaagttccaagtcaaagttactactttaaacttcttaacatgtgcaaatttgcacatgatagaaaaaccc 52777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 127 - 201
Target Start/End: Original strand, 145783 - 145857
Alignment:
Q  127 aaacaaaagtttcaatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaaaaccc 201  Q
    ||||| ||||| |||  |||| |||| | ||||| ||| ||||||| |||||||||||| |||||||||||||||    
T  145783 aaacacaagttccaagtcaaagttactactttaaacttcttaacatgtgcaaatttgcacatgatagaaaaaccc 145857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0229 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0229
Description:

Target: scaffold0229; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 139 - 199
Target Start/End: Complemental strand, 24587 - 24527
Alignment:
Q  139 caatacaaaattaccattttaatctttttaacatttgcaaatttgcagatgatagaaaaac 199  Q
    |||||||||||||| |||||||  || || |||| || ||||||||| |||||||||||||    
T  24587 caatacaaaattactattttaaatttctttacatgtgtaaatttgcacatgatagaaaaac 24527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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