View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21248_low_12 (Length: 301)
Name: NF21248_low_12
Description: NF21248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21248_low_12 |
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| [»] scaffold0096 (1 HSPs) |
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Alignment Details
Target: scaffold0096 (Bit Score: 258; Significance: 1e-144; HSPs: 1)
Name: scaffold0096
Description:
Target: scaffold0096; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 21 - 286
Target Start/End: Original strand, 9185 - 9450
Alignment:
| Q |
21 |
agtcatacatattgttttttcaaaagcactcataaaagttttaattaaaatattttatttgatttttgagaaatgaaaattattagaccagagaacagtg |
120 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
9185 |
agtcatacatattgttttttcaaaagcactcataaaagttttaattaaaatattttatttgatttttgagaaatgaaaattattagatcagagaacagtg |
9284 |
T |
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| Q |
121 |
attaaaaactgaatatgcatcatataattgaatgattcaaaagtgagattacaaaaagaagcctaagaaaactaacgtccaacaaatagataacagaaaa |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
9285 |
attaaaaactgaatatgcatcatataattgaatgattcaaaagtgagattacaaaaagaagcctaagaaaactaacgtccaacaaacagataacagaaaa |
9384 |
T |
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| Q |
221 |
caagaaaatataatggagtggtgatttacttgtataagctatggaatgtatcattatctcactctc |
286 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9385 |
caagaaaatataatggagtggtgatttacttgtataagctatggaatgtatcattatctcactctc |
9450 |
T |
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