View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21248_low_4 (Length: 657)

Name: NF21248_low_4
Description: NF21248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21248_low_4
NF21248_low_4
[»] chr7 (9 HSPs)
chr7 (1-332)||(25061470-25061801)
chr7 (331-607)||(25061172-25061447)
chr7 (46-94)||(1365829-1365877)
chr7 (46-98)||(33909866-33909918)
chr7 (258-318)||(37074085-37074145)
chr7 (57-108)||(38524974-38525025)
chr7 (1-35)||(6380251-6380285)
chr7 (58-95)||(41907993-41908030)
chr7 (46-94)||(26633172-26633220)
[»] chr8 (7 HSPs)
chr8 (110-323)||(7115414-7115626)
chr8 (58-103)||(32098402-32098447)
chr8 (181-293)||(31265531-31265642)
chr8 (46-98)||(3471393-3471445)
chr8 (58-94)||(34524159-34524195)
chr8 (57-108)||(5869538-5869589)
chr8 (1-35)||(42777615-42777649)
[»] chr5 (6 HSPs)
chr5 (46-105)||(20975793-20975852)
chr5 (123-232)||(39778556-39778665)
chr5 (46-94)||(43511438-43511486)
chr5 (46-108)||(19099528-19099590)
chr5 (48-94)||(10591468-10591514)
chr5 (47-99)||(8398777-8398829)
[»] chr4 (9 HSPs)
chr4 (112-249)||(25736412-25736549)
chr4 (58-105)||(10575770-10575817)
chr4 (258-318)||(15647562-15647622)
chr4 (270-318)||(23156645-23156693)
chr4 (46-90)||(39372874-39372918)
chr4 (46-105)||(27632194-27632253)
chr4 (185-234)||(23634832-23634881)
chr4 (123-215)||(34061727-34061819)
chr4 (58-94)||(45172852-45172888)
[»] chr3 (6 HSPs)
chr3 (258-318)||(9827211-9827271)
chr3 (258-318)||(17152305-17152365)
chr3 (46-105)||(48627225-48627284)
chr3 (46-105)||(51939768-51939827)
chr3 (46-98)||(23164783-23164835)
chr3 (58-94)||(43906035-43906071)
[»] chr1 (7 HSPs)
chr1 (49-105)||(52055342-52055398)
chr1 (59-108)||(12971211-12971260)
chr1 (53-103)||(27703748-27703798)
chr1 (53-98)||(2022018-2022063)
chr1 (342-395)||(19203618-19203671)
chr1 (342-395)||(19206028-19206081)
chr1 (46-90)||(20470535-20470579)
[»] scaffold0100 (1 HSPs)
scaffold0100 (46-95)||(46385-46434)
[»] chr6 (6 HSPs)
chr6 (58-98)||(19231412-19231452)
chr6 (46-105)||(5877037-5877096)
chr6 (46-105)||(31860810-31860869)
chr6 (270-318)||(2895883-2895931)
chr6 (46-90)||(3515064-3515108)
chr6 (46-90)||(31258671-31258715)
[»] chr2 (6 HSPs)
chr2 (46-90)||(4855797-4855841)
chr2 (47-91)||(17117834-17117878)
chr2 (46-90)||(36481213-36481257)
chr2 (46-97)||(2063609-2063660)
chr2 (59-110)||(18173148-18173199)
chr2 (258-311)||(21966260-21966313)


Alignment Details
Target: chr7 (Bit Score: 266; Significance: 1e-148; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 332
Target Start/End: Complemental strand, 25061801 - 25061470
Alignment:
Q  1 tttttatttaagtagggggtggatattagacttaannnnnnnnnnaggcccatagtatttggaggtccggcttggttgagcaccttgcactcccccaaag 100  Q
    |||||||||||||||||||||||||||||||||||          ||||||||| ||||||||||||||||||||||||||||||||||||||||||| |    
T  25061801 tttttatttaagtagggggtggatattagacttaattttttttttaggcccataatatttggaggtccggcttggttgagcaccttgcactcccccaagg 25061702  T
Q  101 tcgggtctagctaacacattgtatgatccatttccaccataagataggaatattcatttttaacattactctttcctgaaacttccaatcaaccgaatca 200  Q
    |||||| | |||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  25061701 tcgggtttggctaacacattgtatgatccatttccactataaggtaggaatattcatttttaacattactctttcctgaaatttccaatcaaccgaatca 25061602  T
Q  201 aaaactttctcaaaaccaactttaaataataacaactcccttttttaaccttcaggtatcatccactacttcatttgctataagaattccgtccaaaatc 300  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  25061601 aaaactttctcaaaaccaactttaaataataacaactccctttcttaaccttcaggtatcatccactactttatttgctataagaattccgtccaaaatc 25061502  T
Q  301 tgtctacctttaataaaaattgactgagagtt 332  Q
    ||||||||||||||||||||||||||||||||    
T  25061501 tgtctacctttaataaaaattgactgagagtt 25061470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 331 - 607
Target Start/End: Complemental strand, 25061447 - 25061172
Alignment:
Q  331 ttcctcaatttgtttgctaagacttttgctaaaaccttatacatgcatctcaccatagaaatcggccaaaaatcaacaagctgttgtggattttgaactt 430  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  25061447 ttcctcaatttgtttgctaagacttttgctaaaaccttatacatgcatctcaccatagaaatcagccaaaaatcaacaagctgttgtggattttgaactt 25061348  T
Q  431 taagaataagaactataaaaatgttattgatacgtttcgatagctttcagttacaagggtatcaaataattcatctatatttaattgtttgtaggaaaat 530  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25061347 taagaataagaactataaaaatgttattgatacgtttcgatagctttcagttacaagggtatcaaataattcatctatatttaattgtttgtaggaaaat 25061248  T
Q  531 actaaattcatcatatttaattggcgagttggcgttcattgactgctatcctgttgttacttccttttcatgaatta 607  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  25061247 accaaattcatcatatttaattggcgagttggcgttcattgactgctatcctgttgttacttcc-tttcatgaatta 25061172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 46 - 94
Target Start/End: Complemental strand, 1365877 - 1365829
Alignment:
Q  46 aggcccatagtatttggaggtccggcttggttgagcaccttgcactccc 94  Q
    ||||||||||  |||||||| |||||||| |||||||||||||||||||    
T  1365877 aggcccatagattttggaggcccggcttgattgagcaccttgcactccc 1365829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 46 - 98
Target Start/End: Complemental strand, 33909918 - 33909866
Alignment:
Q  46 aggcccatagtatttggaggtccggcttggttgagcaccttgcactcccccaa 98  Q
    |||||| ||| ||||||||| ||||| |||||||||||||||||| |||||||    
T  33909918 aggcccgtagcatttggaggcccggcctggttgagcaccttgcacacccccaa 33909866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 258 - 318
Target Start/End: Complemental strand, 37074145 - 37074085
Alignment:
Q  258 atcatccactacttcatttgctataagaattccgtccaaaatctgtctacctttaataaaa 318  Q
    |||||| || |||||||| ||||| ||||| || |||||||||||||||||||| ||||||    
T  37074145 atcatctacaacttcattagctatcagaataccatccaaaatctgtctaccttttataaaa 37074085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 57 - 108
Target Start/End: Complemental strand, 38525025 - 38524974
Alignment:
Q  57 atttggaggtccggcttggttgagcaccttgcactcccccaaagtcgggtct 108  Q
    ||||||||| ||||| |||||||||||||||||| ||| ||||| |||||||    
T  38525025 atttggaggcccggcctggttgagcaccttgcacaccctcaaagccgggtct 38524974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 6380251 - 6380285
Alignment:
Q  1 tttttatttaagtagggggtggatattagacttaa 35  Q
    ||||||||||||||||| |||||||||||||||||    
T  6380251 tttttatttaagtagggagtggatattagacttaa 6380285  T

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Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 58 - 95
Target Start/End: Complemental strand, 41908030 - 41907993
Alignment:
Q  58 tttggaggtccggcttggttgagcaccttgcactcccc 95  Q
    |||||||| |||||||||||||||||||||| ||||||    
T  41908030 tttggaggcccggcttggttgagcaccttgctctcccc 41907993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 46 - 94
Target Start/End: Complemental strand, 26633220 - 26633172
Alignment:
Q  46 aggcccatagtatttggaggtccggcttggttgagcaccttgcactccc 94  Q
    ||||||| ||| ||| |||||||||||| ||||||| ||||||||||||    
T  26633220 aggcccaaagtttttagaggtccggcttagttgagctccttgcactccc 26633172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 7e-17; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 110 - 323
Target Start/End: Original strand, 7115414 - 7115626
Alignment:
Q  110 gctaacacattgtatgatccatttccaccataagataggaatattcatttttaacattactctttcctgaaacttccaatcaaccgaatcaaaaactttc 209  Q
    |||||||||||  |||||||||||   ||||||  |||||| ||||||||| ||||||||  ||||| |  |||||||||| || || |||||| | |||    
T  7115414 gctaacacattccatgatccatttttgccataaagtaggaaaattcattttgaacattacagtttccaggtacttccaatcgacagagtcaaaagccttc 7115513  T
Q  210 tcaaaaccaactttaaataataacaactcccttttttaaccttcaggtatcatccactacttcatttgctataagaattccgtccaaaatctgtctacct 309  Q
    || |||   | ||||||||||||||||| | ||||||| | |||  | ||||||||| ||||| || |||||||| |  || |||| || ||||||||||    
T  7115514 tccaaattgaatttaaataataacaact-ctttttttatctttcgagcatcatccaccacttcgttggctataaggaccccttccagaaactgtctacct 7115612  T
Q  310 ttaataaaaattga 323  Q
    | ||||||||||||    
T  7115613 tgaataaaaattga 7115626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 58 - 103
Target Start/End: Original strand, 32098402 - 32098447
Alignment:
Q  58 tttggaggtccggcttggttgagcaccttgcactcccccaaagtcg 103  Q
    |||||||| |||||||||||||||||||||||||||||||||||||    
T  32098402 tttggaggaccggcttggttgagcaccttgcactcccccaaagtcg 32098447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 181 - 293
Target Start/End: Original strand, 31265531 - 31265642
Alignment:
Q  181 acttccaatcaaccgaatcaaaaactttctcaaaaccaactttaaataataacaactcccttttttaaccttcaggtatcatccactacttcatttgcta 280  Q
    ||||||||| |||||||||||||  |||||||||  ||||||| ||||| ||||||| ||||||||||| | | || ||||||||||   ||||||||||    
T  31265531 acttccaataaaccgaatcaaaagttttctcaaagtcaactttgaataacaacaact-ccttttttaacttgcgggcatcatccactgtatcatttgcta 31265629  T
Q  281 taagaattccgtc 293  Q
     ||||||| ||||    
T  31265630 caagaatttcgtc 31265642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 46 - 98
Target Start/End: Complemental strand, 3471445 - 3471393
Alignment:
Q  46 aggcccatagtatttggaggtccggcttggttgagcaccttgcactcccccaa 98  Q
    |||||| ||| ||||||||||||| | |||||||||| |||||||||||||||    
T  3471445 aggcccgtagcatttggaggtccgacctggttgagcatcttgcactcccccaa 3471393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 58 - 94
Target Start/End: Original strand, 34524159 - 34524195
Alignment:
Q  58 tttggaggtccggcttggttgagcaccttgcactccc 94  Q
    ||||||||||||||||| |||||||||||||||||||    
T  34524159 tttggaggtccggcttgattgagcaccttgcactccc 34524195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 57 - 108
Target Start/End: Original strand, 5869538 - 5869589
Alignment:
Q  57 atttggaggtccggcttggttgagcaccttgcactcccccaaagtcgggtct 108  Q
    ||||||||| ||||| |||| ||||||||||||||||| ||||| |||||||    
T  5869538 atttggaggcccggcctggtagagcaccttgcactccctcaaagccgggtct 5869589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 42777649 - 42777615
Alignment:
Q  1 tttttatttaagtagggggtggatattagacttaa 35  Q
    ||||||||||||||||| |||||||||||||||||    
T  42777649 tttttatttaagtagggtgtggatattagacttaa 42777615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 46 - 105
Target Start/End: Complemental strand, 20975852 - 20975793
Alignment:
Q  46 aggcccatagtatttggaggtccggcttggttgagcaccttgcactcccccaaagtcggg 105  Q
    ||||||||||  |||||||| |||||||| ||||||||||||||||||| ||||||||||    
T  20975852 aggcccatagcttttggaggcccggcttgattgagcaccttgcactccctcaaagtcggg 20975793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 123 - 232
Target Start/End: Original strand, 39778556 - 39778665
Alignment:
Q  123 atgatccatttccaccataagataggaatattcatttttaacattactctttcctgaaacttccaatcaaccgaatcaaaaactttctcaaaaccaactt 222  Q
    ||||||||||| | ||||||| | || | ||||||||| ||||| ||  ||||  || | ||||||||||||||||||||| | || |||||| ||||||    
T  39778556 atgatccatttacgccataaggtggggaaattcattttaaacatcacaatttctagataattccaatcaaccgaatcaaaagccttatcaaaatcaactt 39778655  T
Q  223 taaataataa 232  Q
    ||||||||||    
T  39778656 taaataataa 39778665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 46 - 94
Target Start/End: Complemental strand, 43511486 - 43511438
Alignment:
Q  46 aggcccatagtatttggaggtccggcttggttgagcaccttgcactccc 94  Q
    ||||||||||  ||||||||||||||||| |||||||||||||||||||    
T  43511486 aggcccatagcttttggaggtccggcttgattgagcaccttgcactccc 43511438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 46 - 108
Target Start/End: Original strand, 19099528 - 19099590
Alignment:
Q  46 aggcccatagtatttggaggtccggcttggttgagcaccttgcactcccccaaagtcgggtct 108  Q
    |||||| ||||||||||||| ||| | |||||||||||||||||||||| ||| | |||||||    
T  19099528 aggcccgtagtatttggaggcccgacctggttgagcaccttgcactcccacaagggcgggtct 19099590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 48 - 94
Target Start/End: Original strand, 10591468 - 10591514
Alignment:
Q  48 gcccatagtatttggaggtccggcttggttgagcaccttgcactccc 94  Q
    ||||||||  |||||||| |||||||| |||||||||||||||||||    
T  10591468 gcccatagcttttggaggcccggcttgattgagcaccttgcactccc 10591514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 47 - 99
Target Start/End: Complemental strand, 8398829 - 8398777
Alignment:
Q  47 ggcccatagtatttggaggtccggcttggttgagcaccttgcactcccccaaa 99  Q
    ||||| ||| ||||||||||||||| || ||||||||||||||| ||| ||||    
T  8398829 ggcccgtagcatttggaggtccggcctgattgagcaccttgcacaccctcaaa 8398777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000004; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 112 - 249
Target Start/End: Complemental strand, 25736549 - 25736412
Alignment:
Q  112 taacacattgtatgatccatttccaccataagataggaatattcatttttaacattactctttcctgaaacttccaatcaaccgaatcaaaaactttctc 211  Q
    |||||||||  ||||||||||| | ||| | |||||  | ||||||||||| ||| ||| |||   || | |||||||  ||| |||||||| |||||||    
T  25736549 taacacattccatgatccattttcgccaaaggatagagaaattcatttttatcatcactatttaaagatatttccaattcaccaaatcaaaagctttctc 25736450  T
Q  212 aaaaccaactttaaataataacaactcccttttttaac 249  Q
    |||||||||||| ||||| |||| |||| |||||||||    
T  25736449 aaaaccaactttgaataacaacatctcctttttttaac 25736412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 58 - 105
Target Start/End: Original strand, 10575770 - 10575817
Alignment:
Q  58 tttggaggtccggcttggttgagcaccttgcactcccccaaagtcggg 105  Q
    ||||||||||||||||||||||||||||||||||  ||||| ||||||    
T  10575770 tttggaggtccggcttggttgagcaccttgcactttcccaaggtcggg 10575817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 258 - 318
Target Start/End: Complemental strand, 15647622 - 15647562
Alignment:
Q  258 atcatccactacttcatttgctataagaattccgtccaaaatctgtctacctttaataaaa 318  Q
    |||||| ||||||||||| ||||| ||||| || || ||||||||||||||||| ||||||    
T  15647622 atcatctactacttcattagctatcagaataccatctaaaatctgtctaccttttataaaa 15647562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 270 - 318
Target Start/End: Complemental strand, 23156693 - 23156645
Alignment:
Q  270 ttcatttgctataagaattccgtccaaaatctgtctacctttaataaaa 318  Q
    |||||||||||| ||||| || ||||||||||||||||| |||||||||    
T  23156693 ttcatttgctatcagaatcccatccaaaatctgtctacccttaataaaa 23156645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 46 - 90
Target Start/End: Original strand, 39372874 - 39372918
Alignment:
Q  46 aggcccatagtatttggaggtccggcttggttgagcaccttgcac 90  Q
    |||||| ||| ||||||||||||||| ||||||||||||||||||    
T  39372874 aggcccgtagaatttggaggtccggcctggttgagcaccttgcac 39372918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 46 - 105
Target Start/End: Complemental strand, 27632253 - 27632194
Alignment:
Q  46 aggcccatagtatttggaggtccggcttggttgagcaccttgcactcccccaaagtcggg 105  Q
    |||||| ||| ||||||||| ||||| | |||||||||||||||||||| ||| ||||||    
T  27632253 aggcccgtagcatttggaggcccggcctagttgagcaccttgcactccctcaaggtcggg 27632194  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 185 - 234
Target Start/End: Complemental strand, 23634881 - 23634832
Alignment:
Q  185 ccaatcaaccgaatcaaaaactttctcaaaaccaactttaaataataaca 234  Q
    |||||| |||||||||||| | ||||||||  ||||||||||||||||||    
T  23634881 ccaatcgaccgaatcaaaagccttctcaaattcaactttaaataataaca 23634832  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 123 - 215
Target Start/End: Complemental strand, 34061819 - 34061727
Alignment:
Q  123 atgatccatttccaccataagataggaatattcatttttaacattactctttcctgaaacttccaatcaaccgaatcaaaaactttctcaaaa 215  Q
    ||||| ||||||| ||| | |||||||| ||||||||||| ||| | | ||||  || | |||||||||||  |||||||| |||||||||||    
T  34061819 atgattcatttccgccagatgataggaaaattcatttttaccatcattgtttctagatatttccaatcaacaaaatcaaaagctttctcaaaa 34061727  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 58 - 94
Target Start/End: Original strand, 45172852 - 45172888
Alignment:
Q  58 tttggaggtccggcttggttgagcaccttgcactccc 94  Q
    |||| |||||||||||| |||||||||||||||||||    
T  45172852 tttgtaggtccggcttgattgagcaccttgcactccc 45172888  T

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Target: chr3 (Bit Score: 37; Significance: 0.00000000002; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 258 - 318
Target Start/End: Complemental strand, 9827271 - 9827211
Alignment:
Q  258 atcatccactacttcatttgctataagaattccgtccaaaatctgtctacctttaataaaa 318  Q
    |||||| |||| |||||||||||| ||||| || |||||||||||||||||||| ||||||    
T  9827271 atcatctactaattcatttgctatcagaataccatccaaaatctgtctaccttttataaaa 9827211  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 258 - 318
Target Start/End: Complemental strand, 17152365 - 17152305
Alignment:
Q  258 atcatccactacttcatttgctataagaattccgtccaaaatctgtctacctttaataaaa 318  Q
    |||||| |||| |||||||||||| ||||| || |||||||| ||||||||||| ||||||    
T  17152365 atcatctactaattcatttgctatcagaataccatccaaaatttgtctaccttttataaaa 17152305  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 46 - 105
Target Start/End: Original strand, 48627225 - 48627284
Alignment:
Q  46 aggcccatagtatttggaggtccggcttggttgagcaccttgcactcccccaaagtcggg 105  Q
    ||||||||||  |||||||| |||||||| ||||||||||||||| ||| ||| ||||||    
T  48627225 aggcccatagcttttggaggcccggcttgattgagcaccttgcaccccctcaaggtcggg 48627284  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 46 - 105
Target Start/End: Original strand, 51939768 - 51939827
Alignment:
Q  46 aggcccatagtatttggaggtccggcttggttgagcaccttgcactcccccaaagtcggg 105  Q
    |||||||||| ||||||||| || || |||||||||||||||||| ||| ||| ||||||    
T  51939768 aggcccatagaatttggaggccccgcctggttgagcaccttgcacaccctcaaggtcggg 51939827  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 46 - 98
Target Start/End: Original strand, 23164783 - 23164835
Alignment:
Q  46 aggcccatagtatttggaggtccggcttggttgagcaccttgcactcccccaa 98  Q
    |||||||| | ||||||||| ||| | ||||||| ||||||||||||||||||    
T  23164783 aggcccatggcatttggaggcccgacctggttgaacaccttgcactcccccaa 23164835  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 58 - 94
Target Start/End: Original strand, 43906035 - 43906071
Alignment:
Q  58 tttggaggtccggcttggttgagcaccttgcactccc 94  Q
    |||||||||||| |||| |||||||||||||||||||    
T  43906035 tttggaggtccgacttgattgagcaccttgcactccc 43906071  T

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Target: chr1 (Bit Score: 37; Significance: 0.00000000002; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 49 - 105
Target Start/End: Complemental strand, 52055398 - 52055342
Alignment:
Q  49 cccatagtatttggaggtccggcttggttgagcaccttgcactcccccaaagtcggg 105  Q
    ||||||| |||||||||  |||| |||||||||||||||||||||||||| ||||||    
T  52055398 cccatagcatttggaggctcggcctggttgagcaccttgcactcccccaaggtcggg 52055342  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 59 - 108
Target Start/End: Complemental strand, 12971260 - 12971211
Alignment:
Q  59 ttggaggtccggcttggttgagcaccttgcactcccccaaagtcgggtct 108  Q
    ||||||| |||||||| ||||||||||||||||||| ||| |||||||||    
T  12971260 ttggaggcccggcttgattgagcaccttgcactccctcaaggtcgggtct 12971211  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 53 - 103
Target Start/End: Original strand, 27703748 - 27703798
Alignment:
Q  53 tagtatttggaggtccggcttggttgagcaccttgcactcccccaaagtcg 103  Q
    |||| |||||||| || ||||||||||||||||||||||| ||||| ||||    
T  27703748 tagtttttggaggcccagcttggttgagcaccttgcactctcccaaggtcg 27703798  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 53 - 98
Target Start/End: Original strand, 2022018 - 2022063
Alignment:
Q  53 tagtatttggaggtccggcttggttgagcaccttgcactcccccaa 98  Q
    ||||||||||| | ||||| |||||||| |||||||||||||||||    
T  2022018 tagtatttggaagcccggcctggttgagtaccttgcactcccccaa 2022063  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 342 - 395
Target Start/End: Original strand, 19203618 - 19203671
Alignment:
Q  342 gtttgctaagacttttgctaaaaccttatacatgcatctcaccatagaaatcgg 395  Q
    ||||||||||||||| ||||  |||||||||||||||| ||||| ||| |||||    
T  19203618 gtttgctaagactttagctaccaccttatacatgcatcccaccaaagatatcgg 19203671  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 342 - 395
Target Start/End: Original strand, 19206028 - 19206081
Alignment:
Q  342 gtttgctaagacttttgctaaaaccttatacatgcatctcaccatagaaatcgg 395  Q
    ||||||||||||||| ||||  |||||||||||||||| ||||| ||| |||||    
T  19206028 gtttgctaagactttagctaccaccttatacatgcatcccaccaaagatatcgg 19206081  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 46 - 90
Target Start/End: Complemental strand, 20470579 - 20470535
Alignment:
Q  46 aggcccatagtatttggaggtccggcttggttgagcaccttgcac 90  Q
    |||||| ||| ||||| ||||||||| ||||||||||||||||||    
T  20470579 aggcccgtagcatttgtaggtccggcctggttgagcaccttgcac 20470535  T

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Target: scaffold0100 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0100
Description:

Target: scaffold0100; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 46 - 95
Target Start/End: Original strand, 46385 - 46434
Alignment:
Q  46 aggcccatagtatttggaggtccggcttggttgagcaccttgcactcccc 95  Q
    |||||||| | ||||| ||||||||| |||||||||||||||||||||||    
T  46385 aggcccatggcatttgaaggtccggcctggttgagcaccttgcactcccc 46434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000004; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 58 - 98
Target Start/End: Complemental strand, 19231452 - 19231412
Alignment:
Q  58 tttggaggtccggcttggttgagcaccttgcactcccccaa 98  Q
    |||||||||||| ||||||||||||||||||||| ||||||    
T  19231452 tttggaggtccgacttggttgagcaccttgcacttccccaa 19231412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 46 - 105
Target Start/End: Original strand, 5877037 - 5877096
Alignment:
Q  46 aggcccatagtatttggaggtccggcttggttgagcaccttgcactcccccaaagtcggg 105  Q
    ||||||||||   ||||||| ||| |||| ||||||||||||||||||||||| ||||||    
T  5877037 aggcccatagctcttggaggcccgacttgattgagcaccttgcactcccccaaggtcggg 5877096  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 46 - 105
Target Start/End: Complemental strand, 31860869 - 31860810
Alignment:
Q  46 aggcccatagtatttggaggtccggcttggttgagcaccttgcactcccccaaagtcggg 105  Q
    ||||||||||  ||| ||||||||||||| |||||||||||||| |||| ||| ||||||    
T  31860869 aggcccatagcttttcgaggtccggcttgattgagcaccttgcattccctcaaggtcggg 31860810  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 270 - 318
Target Start/End: Original strand, 2895883 - 2895931
Alignment:
Q  270 ttcatttgctataagaattccgtccaaaatctgtctacctttaataaaa 318  Q
    |||||||||||| ||||| || ||||||||||||||||| |||| ||||    
T  2895883 ttcatttgctatcagaataccatccaaaatctgtctacccttaacaaaa 2895931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 46 - 90
Target Start/End: Original strand, 3515064 - 3515108
Alignment:
Q  46 aggcccatagtatttggaggtccggcttggttgagcaccttgcac 90  Q
    |||||| ||| ||||| ||| ||||||||||||||||||||||||    
T  3515064 aggcccgtagcatttgtaggcccggcttggttgagcaccttgcac 3515108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 46 - 90
Target Start/End: Original strand, 31258671 - 31258715
Alignment:
Q  46 aggcccatagtatttggaggtccggcttggttgagcaccttgcac 90  Q
    |||||| ||| ||||| ||||||||| ||||||||||||||||||    
T  31258671 aggcccgtagcatttgtaggtccggcctggttgagcaccttgcac 31258715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000004; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 46 - 90
Target Start/End: Complemental strand, 4855841 - 4855797
Alignment:
Q  46 aggcccatagtatttggaggtccggcttggttgagcaccttgcac 90  Q
    |||||| ||| ||||||||||||||| ||||||||||||||||||    
T  4855841 aggcccgtagaatttggaggtccggcctggttgagcaccttgcac 4855797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 47 - 91
Target Start/End: Original strand, 17117834 - 17117878
Alignment:
Q  47 ggcccatagtatttggaggtccggcttggttgagcaccttgcact 91  Q
    |||||||||| ||||||||||||||||| ||||||||||| ||||    
T  17117834 ggcccatagtttttggaggtccggcttgattgagcaccttacact 17117878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 46 - 90
Target Start/End: Complemental strand, 36481257 - 36481213
Alignment:
Q  46 aggcccatagtatttggaggtccggcttggttgagcaccttgcac 90  Q
    |||||| ||| ||||||||||||||| ||||||||||||||||||    
T  36481257 aggcccgtagcatttggaggtccggcctggttgagcaccttgcac 36481213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 46 - 97
Target Start/End: Complemental strand, 2063660 - 2063609
Alignment:
Q  46 aggcccatagtatttggaggtccggcttggttgagcaccttgcactccccca 97  Q
    |||||| ||||||||||||| ||||  ||||||| |||||||||||||||||    
T  2063660 aggcccgtagtatttggaggcccggtctggttgaacaccttgcactccccca 2063609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 59 - 110
Target Start/End: Original strand, 18173148 - 18173199
Alignment:
Q  59 ttggaggtccggcttggttgagcaccttgcactcccccaaagtcgggtctag 110  Q
    ||||||| |||||||| ||||||||||||||||||| ||||| |||| ||||    
T  18173148 ttggaggcccggcttgattgagcaccttgcactccctcaaagccgggcctag 18173199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 258 - 311
Target Start/End: Original strand, 21966260 - 21966313
Alignment:
Q  258 atcatccactacttcatttgctataagaattccgtccaaaatctgtctaccttt 311  Q
    |||||| ||||||||||| ||||| |||||  | ||||||||||||||||||||    
T  21966260 atcatctactacttcattagctatcagaatagcatccaaaatctgtctaccttt 21966313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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