View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21248_low_9 (Length: 334)
Name: NF21248_low_9
Description: NF21248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21248_low_9 |
 | |
|
| [»] chr6 (2 HSPs) |
| |
|
| [»] chr5 (3 HSPs) |
| |
|
| [»] chr3 (2 HSPs) |
| |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 6 - 334
Target Start/End: Complemental strand, 31152429 - 31152104
Alignment:
| Q |
6 |
agaaagtagcttgtggtgcttaacttcaatttgtgtcagaagcaatttgaaagcatggcaaatggtagtacaaaagtcaaggacggtggagtatagtggt |
105 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |||||||| ||||||||||||||||| |||||||||||| |
|
|
| T |
31152429 |
agaaagtagcttgcggtgcttaacttcaatttgtgtcagaagcaatttgaaagcacggcagatggtagttcaaaagtcaaggacggttgagtatagtggt |
31152330 |
T |
|
| Q |
106 |
tgaatgtgagaaccaagcattcaatgcttgtagttcaaatctctctataaatagagaagagcttcagcaaagcataccacaccacaacataatcctcact |
205 |
Q |
| |
|
|||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| | |||||||||||| || | || | |
|
|
| T |
31152329 |
tgaatgtgagaaccaagcattcaatgtttgtggttcaaatctctctataaatagagaagagcttcagcaaagca-atcacaccacaacacaa--cacaat |
31152233 |
T |
|
| Q |
206 |
cacatagagttgagagaaaaatagagagttcctcataagagtgtgagagaaaaatatagtgagccaatttgtgagagttgtatctacaaattgagataca |
305 |
Q |
| |
|
| |||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |||||| |
|
|
| T |
31152232 |
cctcgggagttgagagaaaaatagagagttcctcgtaagagtgtgagagaaaaatatagtaagccaatttgtgagagttgtatctataaatttagatacg |
31152133 |
T |
|
| Q |
306 |
tagttaggtccacctgagggtgaagattt |
334 |
Q |
| |
|
|||||||||||| |||||||||||||||| |
|
|
| T |
31152132 |
tagttaggtccatctgagggtgaagattt |
31152104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 252 - 314
Target Start/End: Complemental strand, 1111564 - 1111500
Alignment:
| Q |
252 |
gagaaaaatatagtgagccaatttgtgagagttgtatcta--caaattgagatacatagttaggt |
314 |
Q |
| |
|
|||||||||||| || ||||||||||||| | |||||| ||||||||||||||||||||||| |
|
|
| T |
1111564 |
gagaaaaatataaggaaccaatttgtgagaaatatatctatacaaattgagatacatagttaggt |
1111500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 158; Significance: 5e-84; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 138 - 334
Target Start/End: Original strand, 33807844 - 33808038
Alignment:
| Q |
138 |
gttcaaatctctctataaatagagaagagcttcagcaaagcataccacaccacaacataatcctcactcacatagagttgagagaaaaatagagagttcc |
237 |
Q |
| |
|
||||||| | ||||||||||||||||||| |||||||| | | |||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33807844 |
gttcaaaaccctctataaatagagaagagtttcagcaatgaaa--cacaccacaacacaatcctcactcacatagagttgagagaaaaatagagagttcc |
33807941 |
T |
|
| Q |
238 |
tcataagagtgtgagagaaaaatatagtgagccaatttgtgagagttgtatctacaaattgagatacatagttaggtccacctgagggtgaagattt |
334 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33807942 |
tcataagagtgtgagagaaaaatatagtgagccaatttgtgagagttgtatctacaaattgagatacatagttaggtccacctgagggtgaagattt |
33808038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 138 - 334
Target Start/End: Original strand, 33811498 - 33811692
Alignment:
| Q |
138 |
gttcaaatctctctataaatagagaagagcttcagcaaagcataccacaccacaacataatcctcactcacatagagttgagagaaaaatagagagttcc |
237 |
Q |
| |
|
||||||| | ||||||||||||||||||| |||||||| | | |||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33811498 |
gttcaaaaccctctataaatagagaagagtttcagcaatgaaa--cacaccacaacacaatcctcactcacatagagttgagagaaaaatagagagttcc |
33811595 |
T |
|
| Q |
238 |
tcataagagtgtgagagaaaaatatagtgagccaatttgtgagagttgtatctacaaattgagatacatagttaggtccacctgagggtgaagattt |
334 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33811596 |
tcataagagtgtgagagaaaaatatagtgagccaatttgtgagagttgtatctacaaattgagatacatagttaggtccacctgagggtgaagattt |
33811692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 138 - 334
Target Start/End: Original strand, 33816416 - 33816610
Alignment:
| Q |
138 |
gttcaaatctctctataaatagagaagagcttcagcaaagcataccacaccacaacataatcctcactcacatagagttgagagaaaaatagagagttcc |
237 |
Q |
| |
|
||||||| | ||||||||||||||||||| |||||||| | | |||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33816416 |
gttcaaaaccctctataaatagagaagagtttcagcaatgaaa--cacaccacaacacaatcctcactcacatagagttgagagaaaaatagagagttcc |
33816513 |
T |
|
| Q |
238 |
tcataagagtgtgagagaaaaatatagtgagccaatttgtgagagttgtatctacaaattgagatacatagttaggtccacctgagggtgaagattt |
334 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33816514 |
tcataagagtgtgagagaaaaatatagtgagccaatttgtgagagttgtatctacaaattgagatacatagttaggtccacctgagggtgaagattt |
33816610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 127; Significance: 2e-65; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 105 - 334
Target Start/End: Original strand, 50602993 - 50603226
Alignment:
| Q |
105 |
ttgaatgtgagaaccaagcattcaatgcttgtagttcaaatctctctataaatagagaagagcttcagcaaagcataccacaccacaacata-----atc |
199 |
Q |
| |
|
||||| ||| |||||||||||| ||||||| ||||| ||||||||||||||||||||||||||||||||||| || ||||||||||||| ||| |
|
|
| T |
50602993 |
ttgaaagtgtgaaccaagcatttaatgcttacggttcatttctctctataaatagagaagagcttcagcaaagcaaac-acaccacaacatagcacaatc |
50603091 |
T |
|
| Q |
200 |
ctcactcacatagagttgagagaaaaatagagagttcctcataagagtgtgagagaaaaatatagtgagccaatttg--tgagagttgtatctacaaatt |
297 |
Q |
| |
|
|||||||||| |||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
50603092 |
ctcactcacacagagttgagagaaaaatagaaagttcctcataaga--gtgagagaaaaatatagtgagccaatttgtatgagagttgtatctacaaatt |
50603189 |
T |
|
| Q |
298 |
gagatacatagttaggtccacctgagggtgaagattt |
334 |
Q |
| |
|
|||||| ||||||||||||| || | ||||||||||| |
|
|
| T |
50603190 |
gagatatatagttaggtccatctaaaggtgaagattt |
50603226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 255 - 334
Target Start/End: Complemental strand, 31725448 - 31725371
Alignment:
| Q |
255 |
aaaaatatagtgagccaatttgtgagagttgtatctacaaattgagatacatagttaggtccacctgagggtgaagattt |
334 |
Q |
| |
|
||||||||||| | |||||||||||| |||| |||||||||||||||||| || |||||||||| || |||||||||| |
|
|
| T |
31725448 |
aaaaatatagttaatcaatttgtgagaattgt--ctacaaattgagatacatcgtaaggtccacctaagtgtgaagattt |
31725371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 251 - 307
Target Start/End: Complemental strand, 8252853 - 8252797
Alignment:
| Q |
251 |
agagaaaaatatagtgagccaatttgtgagagttgtatctacaaattgagatacata |
307 |
Q |
| |
|
|||||||||||||||||| |||||| ||| ||||||||||||||||||||||||||| |
|
|
| T |
8252853 |
agagaaaaatatagtgagtcaatttatgatagttgtatctacaaattgagatacata |
8252797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 296 - 334
Target Start/End: Complemental strand, 29707069 - 29707031
Alignment:
| Q |
296 |
ttgagatacatagttaggtccacctgagggtgaagattt |
334 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
29707069 |
ttgagatacatagttaggtccacccgagggtgaagattt |
29707031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University