View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21249_high_2 (Length: 465)
Name: NF21249_high_2
Description: NF21249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21249_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 303; Significance: 1e-170; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 16 - 322
Target Start/End: Complemental strand, 35511066 - 35510760
Alignment:
| Q |
16 |
ataatcagttctacggcttttctgcacatcatgcaaaacctaccaggcagaatttcagtcaaagcatatgtaacaagcatatcattcatagcaagtactc |
115 |
Q |
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| T |
35511066 |
ataatcagttatacggcttttctgcacatcatgcaaaacctaccaggcagaatttcagtcaaagcatatgtaacaagcatatcattcatagcaagtactc |
35510967 |
T |
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| Q |
116 |
tagttttcacaatttagaatcagaaggtttgaaattttaataatgcttgtaagtaaaatacaattctcctccatctccatgcccctcgtgttcaaactag |
215 |
Q |
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| T |
35510966 |
tagttttcacaatttagaatcagaaggtttgaaattttaataatgcttgtaagtaaaatacaattctcctccatctccatgcccctcgtgttcaaactag |
35510867 |
T |
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| Q |
216 |
ttgaaaaatatttagtggctactccataaactgcatatttcttggttaatcactcaataacaattaatgctgtaaattcactttcaagggaataattagc |
315 |
Q |
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| T |
35510866 |
ttgaaaaatatttagtggctactccataaactgcatatttcttggttaatcactcaataacaattaatgctgtaaattcactttcaagggaataattagc |
35510767 |
T |
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| Q |
316 |
tcacaac |
322 |
Q |
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||||||| |
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| T |
35510766 |
tcacaac |
35510760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 322 - 447
Target Start/End: Complemental strand, 35510737 - 35510612
Alignment:
| Q |
322 |
cttaaaaaacggcatgcgaactaaaaagtaaaattaagcatgaacccgtgtatccacgatctacgattagagtctaactcgtcgaagtatttaagaggtt |
421 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
35510737 |
cttaaaaaacggcatgcgaactaaaaagtaaaattaagcatgaacccgtgtatccacgatctacggttagagtctaactcgtcgaagtatttaagaggtt |
35510638 |
T |
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| Q |
422 |
gacatttcccaaatgacactcttcta |
447 |
Q |
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| T |
35510637 |
gacatttcccaaatgagattcttcta |
35510612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 235 - 321
Target Start/End: Complemental strand, 35502387 - 35502295
Alignment:
| Q |
235 |
tactccataaactgcatatttcttggttaatcactcaataaca---attaatgctgtaaattcact---ttcaagggaataattagctcacaa |
321 |
Q |
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|||| ||||||||||||||||||| |||| |||||||||||| | |||||||||||||| || |||||||||||||||||||||||| |
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| T |
35502387 |
tacttcataaactgcatatttcttaattaaacactcaataacaactaataatgctgtaaattacctttcttcaagggaataattagctcacaa |
35502295 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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