View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21249_high_7 (Length: 249)
Name: NF21249_high_7
Description: NF21249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21249_high_7 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 2 - 232
Target Start/End: Original strand, 42560774 - 42561022
Alignment:
| Q |
2 |
aatattaatatcaaactataacagttatatgaacaagtctaggatttggtagagggagagtaatcgacattagacagccatcctatacat---------- |
91 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42560774 |
aatattaatatcaaactataacagttatatgaacaagtctaggatttggtagagggagagtaatcgacattagacagccatcctatacatcaagaagcct |
42560873 |
T |
|
| Q |
92 |
--------acattttggatgacagactataacattgaaaaggcatgaaataaaattacatctacaatctacaaaataatggtcaaatgcagatcatggaa |
183 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42560874 |
tcactttcacattttggatgacagactataacattgaaaaggcatgaaataaaattacatctacaatctacaaaataatggtcaaatgcagatcatggaa |
42560973 |
T |
|
| Q |
184 |
aatagtgttttgtttcaaattctaccatgctatagtgcaacattatttg |
232 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42560974 |
aatagtgttttgtttcaaattctaccatgctatagtgcaacattatttg |
42561022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University