View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21249_low_3 (Length: 394)
Name: NF21249_low_3
Description: NF21249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21249_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 353; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 17 - 381
Target Start/End: Original strand, 9127108 - 9127472
Alignment:
| Q |
17 |
attttatagtgcagaatgagatatgcacaaaattatgtagagtctaatatattactaaacaattccattacatatgcaaactcaaccccttagtttgacc |
116 |
Q |
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| T |
9127108 |
attttatagtgcagaatgagatatgcacaaaattatgtagagtctaatatattactaaacaattccattacatatgcaaactcaaccccttagtttgacc |
9127207 |
T |
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| Q |
117 |
aaaagggactaaaagcaaaacagttattcattttctcagagaatataggagttaggtaaagaaatgttttcaatctgcagttacatatgttattcttcgt |
216 |
Q |
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| T |
9127208 |
caaagggactaaaagcaaaacaattattcattttctcagagaatataggagttaggtaaagaaatgttttcaatctgcagttacatattttattcttcgt |
9127307 |
T |
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| Q |
217 |
cggctgatacttcatcgaatttatgtattaatgtacacgtgtttgaaagattcactttctcctccgctgcccatattatcacaaagtacgctgaagcttg |
316 |
Q |
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| T |
9127308 |
cggctgatacttcatcgaatttatgtattaatgtacacgtgtttgaaagattcactttctcctccgctgcccatattatcacaaagtacgctgaagcttg |
9127407 |
T |
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| Q |
317 |
tcgtgttatacgtgtctcacaagtcatcttttcctccgatttcttgattctcgtcaattcctcct |
381 |
Q |
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| T |
9127408 |
tcgtgttatacgtgtctcacaagtcatcttttcctccgatttcttgattctcgtcaattcctcct |
9127472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 178 - 360
Target Start/End: Complemental strand, 9169972 - 9169788
Alignment:
| Q |
178 |
aaatgttttcaatctgcagttacatatgttattcttcgtcggctgatacttcatcgaatttatgtattaatgta-cacgtgtttgaaagattcacttt-c |
275 |
Q |
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| T |
9169972 |
aaatattttcaatctgcagttacatattttattcttcattggctgatattccatcgaatttaagtcctaatctagcatgtgtttgaaagatccacttttc |
9169873 |
T |
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| Q |
276 |
tcctccgctgcccatattatcacaaagtacgctgaagcttgtcgtgttatacgtgtctcacaagtcatcttttcctccgatttct |
360 |
Q |
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| T |
9169872 |
tcatccgctacccgtattatcaagaactacactgaagctcgtcgtgttatacgtgtctcagaagtcatcttttcctccgatttct |
9169788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 91 - 225
Target Start/End: Complemental strand, 9173291 - 9173162
Alignment:
| Q |
91 |
tgcaaactcaaccccttagtttgaccaaaagggactaaaagcaaaacagttattcattttctcagagaatataggagttaggtaaagaaatgttttcaat |
190 |
Q |
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| T |
9173291 |
tgcaaacttaaacctttagtttgaccaaa-gggactaaaagcaaaacaaatattcattttctcagagaata---gagctgtgtaaggaaatg-tttcgat |
9173197 |
T |
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| Q |
191 |
ctgcagttacatatgttattcttcgtcggctgata |
225 |
Q |
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| T |
9173196 |
ctgcagttacttatttttttcttcatcgtctgata |
9173162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 91 - 225
Target Start/End: Original strand, 9157119 - 9157248
Alignment:
| Q |
91 |
tgcaaactcaaccccttagtttgaccaaaagggactaaaagcaaaacagttattcattttctcagagaatataggagttaggtaaagaaatgttttcaat |
190 |
Q |
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| T |
9157119 |
tgcaaacttaaacctttagtttgaccaaa-gggactaaaagcaaaacaaatattcattttctcagagagta---gagctgtgtaaggaaatg-tttcgat |
9157213 |
T |
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| Q |
191 |
ctgcagttacatatgttattcttcgtcggctgata |
225 |
Q |
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| T |
9157214 |
ctgcagttacttatttttttcttcatcgtctgata |
9157248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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