View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21249_low_5 (Length: 328)
Name: NF21249_low_5
Description: NF21249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21249_low_5 |
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| [»] scaffold0168 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 1 - 312
Target Start/End: Original strand, 34112549 - 34112863
Alignment:
| Q |
1 |
ttctgatccttgtcgaacactctaaacgcttctttcagttcttcttctgaatctgtgtctttcattttccttgccataaggtttagaaattcaggaaaat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34112549 |
ttctgatccttgtcgaacactctaaacgcttctttcagttcttcttctgaatctgtgtctttcattttccttgccataaggtttagaaattcaggaaaat |
34112648 |
T |
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| Q |
101 |
cgattgtgccgttaccatcggcatctacttcgtttatcatgtcttgtagctctgcctctgttggattctggcctaatgatctcatcacggttccaagctc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
34112649 |
cgattgtgccgttaccatcggcatctacttcgtttatcatgtcttgtagctctgcctctgttggattctggcctaatgacctcatcacggttccaagctc |
34112748 |
T |
|
| Q |
201 |
ctttgttgtgatggaaccttcagaatcatataatgttatg---ttgtgataacttaagaattacggacacgacgaggaacactggacatgatactaacac |
297 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |
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| T |
34112749 |
ctttgttgtgatggaaccttcagaatcatataatgttatgcaattgtgataacttaagaattacggacacgacgaggaacactagacatgatactgacac |
34112848 |
T |
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| Q |
298 |
gttaacatcaataat |
312 |
Q |
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||||||||||||||| |
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| T |
34112849 |
gttaacatcaataat |
34112863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 8921258 - 8921476
Alignment:
| Q |
1 |
ttctgatccttgtcgaacactctaaacgcttctttcagttcttcttctgaatctgtgtctttcattttccttgccataaggtttagaaattcaggaaaat |
100 |
Q |
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|||||||||||||| || || | ||||||||||||||| || || || || || ||||| ||||| ||||||||||| ||||| ||||| || || || | |
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| T |
8921258 |
ttctgatccttgtcaaaaacccgaaacgcttctttcagctcctcctcagagtcggtgtccttcatcttccttgccatgaggttaagaaactcggggaagt |
8921357 |
T |
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| Q |
101 |
cgattgtgccgttaccatcggcatctacttcgtttatcatgtcttgtagctctgcctctgttggattctggcctaatgatctcatcacggttccaagctc |
200 |
Q |
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| T |
8921358 |
caatagtaccattcccatcagcatctacttcattgatcatgtcctgaagctctgcctcagttgggttttgccccaatgaacgcataacagttccaagctc |
8921457 |
T |
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| Q |
201 |
ctttgttgtgatggaacct |
219 |
Q |
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||| ||||||||| ||||| |
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| T |
8921458 |
cttggttgtgatgcaacct |
8921476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0168 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: scaffold0168
Description:
Target: scaffold0168; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 164
Target Start/End: Original strand, 35783 - 35946
Alignment:
| Q |
1 |
ttctgatccttgtcgaacactctaaacgcttctttcagttcttcttctgaatctgtgtctttcattttccttgccataaggtttagaaattcaggaaaat |
100 |
Q |
| |
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|||||||||||||| ||||| | ||| ||||| || ||||| || |||||||| ||||||||||| || | ||||| ||||| || |||||||| |||| |
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| T |
35783 |
ttctgatccttgtcaaacacacgaaaggcttccttaagttcctcctctgaatcagtgtctttcatcttacgggccatcaggttgaggaattcagggaaat |
35882 |
T |
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| Q |
101 |
cgattgtgccgttaccatcggcatctacttcgtttatcatgtcttgtagctctgcctctgttgg |
164 |
Q |
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| || || || || ||||| ||||| ||||| || ||||||||||||||||||||||| ||||| |
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| T |
35883 |
caatggtaccattgccatcagcatcaacttcattgatcatgtcttgtagctctgcctcagttgg |
35946 |
T |
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