View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21249_low_6 (Length: 311)
Name: NF21249_low_6
Description: NF21249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21249_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 296
Target Start/End: Complemental strand, 42560657 - 42560364
Alignment:
| Q |
1 |
tgatcttatatgtggcatcatcggcccaaaaagtattcctcaataaaatgaaacacattaggacctaaaaagaaaattaaccattttcctttttagaatc |
100 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42560657 |
tgatcttatatgtggcatca---gcccaaaaagtattcctcaataaaatgaagcacattaggacctaaaaagaaaattaaccattttcctttttagaatc |
42560561 |
T |
|
| Q |
101 |
cagcccctcaccttgcaaaccaaaataaaaatcattaccttccctcccttccgctcgattaagcaaaaaacctgattaa-ttatcatgtagatcttgact |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
42560560 |
cagcccctcaccttgcaaaccaaaataaaaatcattaccttccctcccctcccctcgattaagcaaaaaacctgattaatttatcatgtagatcttgact |
42560461 |
T |
|
| Q |
200 |
tacgccataacaattaataaggnnnnnnnggtgttatactctaaccatttgtcataagtgattgattaattgttttgttaaaactcaccgtgagtat |
296 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42560460 |
tacgccataacaattaataaggaaaaaaaggtgttatactctaaccatttgtcataagtgattgattaattgttttgttaaaactcaccgtgagtat |
42560364 |
T |
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