View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21249_low_7 (Length: 286)
Name: NF21249_low_7
Description: NF21249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21249_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 135; Significance: 2e-70; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 7837053 - 7837187
Alignment:
| Q |
1 |
aagttcacacattagtcttcaataacccacctcaaaattcacaccctaaccataatactactactaatctttatccaccaccacatcttgcaccttcttc |
100 |
Q |
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| T |
7837053 |
aagttcacacattagtcttcaataacccacctcaaaattcacaccctaaccataatactactactaatctttatccaccaccacatcttgcaccttcttc |
7837152 |
T |
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| Q |
101 |
tcaaagacctatcatagatccagatctaacggctg |
135 |
Q |
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| T |
7837153 |
tcaaagacctatcatagatccagatctaacggctg |
7837187 |
T |
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Target: chr5; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 205 - 268
Target Start/End: Original strand, 7837257 - 7837320
Alignment:
| Q |
205 |
aaatatgttaccgagaatgtctgagaaaccacgcggcaagcatgggaagccacgtggtagatgg |
268 |
Q |
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| T |
7837257 |
aaatatgttaccgagaatgtctgagaaaccacgcggcaagcatgggaagccacgtggtagatgg |
7837320 |
T |
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