View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2124R-Insertion-3 (Length: 300)
Name: NF2124R-Insertion-3
Description: NF2124R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2124R-Insertion-3 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 269; Significance: 1e-150; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 6 - 300
Target Start/End: Original strand, 40853716 - 40854014
Alignment:
| Q |
6 |
tcaatttcagcagtaacagtgaagcaggcatgacacttaagtatccatctggaatgcaaattattaaatataa---gcacatagaatacaatgtcatatt |
102 |
Q |
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| T |
40853716 |
tcaatttcagcagtaacagtgaagcaggcatgacacttaagtatccatctggaatgcaaattaataaatataataagcacatagaatacaatgtcatatt |
40853815 |
T |
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| Q |
103 |
ttgattcataggatagcatcatagagattagaagaaatgggcttgtgaaattgcataagcaaaatagtgcacaatgtttaataaaacatacaagtttcaa |
202 |
Q |
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| T |
40853816 |
ttgattcatagggtagcatcatagagattagaagaaatgggcttgtgaaattgcataagcaaaatagtgcacaatgtttaataaaacatacaagtttcaa |
40853915 |
T |
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| Q |
203 |
tcccttcacacacacgtacaaaaatttacttcaaatagcaaggaaaggtgatctataataaaatggtgaatattgaagaagc-aaacaattacctgtat |
300 |
Q |
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| T |
40853916 |
tcccttcacacacacgtacaaaaatttacttcaaatagcaaggaaaggtgatctataataaaatggtgaatattgaagaagcaaaacaattacctgtat |
40854014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 7 - 284
Target Start/End: Original strand, 40858130 - 40858402
Alignment:
| Q |
7 |
caatttcagcagtaacagtgaagcaggcatgacacttaagtatccatctggaatgcaaattatt-aaatataagcacatagaatacaatgtcatattttg |
105 |
Q |
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| T |
40858130 |
caatttcagcagtaacagtgaagcaggcatgacacttgagtatccatctggaatgcaaataattaaaagataagcacgtaaaatacaacagcatattgtg |
40858229 |
T |
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| Q |
106 |
attcataggatagcatcatagagattagaagaaatgggcttgtgaaattgcataagcaaaatagtgcacaatgtttaataaaacatacaagtttcaatcc |
205 |
Q |
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| T |
40858230 |
cttcgtaggatagtatc--agagattataagaaataggcatgtgaaattgcatgagcataatactgcacaatgtttaacaaaacatacaagtttcaatcc |
40858327 |
T |
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| Q |
206 |
cttcacacacacgtacaaaaatttacttcaaatagcaaggaaaggtgatctataataaaatggtgaatattgaagaagc |
284 |
Q |
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| T |
40858328 |
cgtcacaca----ttaaaaaatttactccaaatagcaaggacaggtgatctataataacatggtgaatattgtagaagc |
40858402 |
T |
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