View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2124R-Insertion-5 (Length: 208)
Name: NF2124R-Insertion-5
Description: NF2124R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2124R-Insertion-5 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 133; Significance: 1e-69; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 133; E-Value: 1e-69
Query Start/End: Original strand, 66 - 208
Target Start/End: Complemental strand, 40772153 - 40772011
Alignment:
| Q |
66 |
caccctcctcgwgcttgattctagtacaagtataccaaactcattcacaaccacatttccttaatctcttttcattttctcttatctatataacacttta |
165 |
Q |
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| T |
40772153 |
caccctcctcgtgcttgattctagtacaagtataccaaactcattcacaaccacatttccttaatctcttttcattttctcttatctatataacacttta |
40772054 |
T |
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| Q |
166 |
caatctccacctcattttcttcatcaaaaaccactcatctttc |
208 |
Q |
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| T |
40772053 |
caatctccacctcattttcttcatcaaaaacaattcatctttc |
40772011 |
T |
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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 41
Target Start/End: Complemental strand, 40772220 - 40772188
Alignment:
| Q |
9 |
agccattcattaacaaacactttgcttaacaca |
41 |
Q |
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| T |
40772220 |
agccattcattaacaaacactttgcttaacaca |
40772188 |
T |
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