View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2124_high_3 (Length: 362)
Name: NF2124_high_3
Description: NF2124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2124_high_3 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 296; Significance: 1e-166; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 7 - 362
Target Start/End: Complemental strand, 12751944 - 12751590
Alignment:
| Q |
7 |
gagatgaacagatacagatagaaatcgtggtcaaagatgttgtactataatattttaaataatagcannnnnnnnaggacaataatattttaaatgatag |
106 |
Q |
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| T |
12751944 |
gagaagaacagatacaaatagaaatcgtggtcaaggatgttgtactataatattttaaataatagcatttttttt-ggacaataatattttaaatgatag |
12751846 |
T |
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| Q |
107 |
cattggtgatgataaatattactagtgatttaaggcatatccccatcttcccaatatttgttgtttgtttaatacatgagtagattacgatgtcaaactg |
206 |
Q |
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| T |
12751845 |
cattggtgatgataaatattactagtgatttaaggcatatccccatcttcccaatatttgttgtttgtttaatacatgagtagattacgatgtcaaactg |
12751746 |
T |
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| Q |
207 |
tttgcaccgatgagtagattcccttcagtggattttggtgcttgagtttagttaatgtaactcattggcctgtcattacgatatttgtcaagattgatta |
306 |
Q |
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| T |
12751745 |
tttgcaccgatgagtagatccccttcggttgattttggtgcttgagtttagttaatgtaactaattggcctgtcattacgatatttgtcaagattgatta |
12751646 |
T |
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| Q |
307 |
ttgaacattgattatatctgagggcaagaataactaaataatctttctttatttaa |
362 |
Q |
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| T |
12751645 |
ttgaacattgattatatctgagggcaagaataactaaataatctttctttatttaa |
12751590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 12 - 362
Target Start/End: Complemental strand, 12814901 - 12814552
Alignment:
| Q |
12 |
gaacagatacagatagaaatcgtggtcaaagatgttgtactataatattttaaataatagcannnnnnnnaggacaataatattttaaatgatagcattg |
111 |
Q |
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| T |
12814901 |
gaacagatacaaatagaaatcgtggtcaaggatgttgtactataatattttaaataatagcatttttttt-ggacaataatattttaaatgatagcattg |
12814803 |
T |
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| Q |
112 |
gtgatgataaatattactagtgatttaaggcatatccccatcttcccaatatttgttgtttgtttaatacatgagtagattacgatgtcaaactgtttgc |
211 |
Q |
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| T |
12814802 |
gtgatgataaatattactagtgatttaaggcatatccccatcttcccaatatttgttgtttgtttaatacatgaggagattacgatgtcaaactgtttgc |
12814703 |
T |
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| Q |
212 |
accgatgagtagattcccttcagtggattttggtgcttgagtttagttaatgtaactcattggcctgtcattacgatatttgtcaagattgattattgaa |
311 |
Q |
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| T |
12814702 |
accgatgagtagattcccttcggtggattttggtgcttgagtttagttaatgtaactaattggcctgtcattacgatatttgtcaagattgattattgaa |
12814603 |
T |
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| Q |
312 |
cattgattatatctgagggcaagaataactaaataatctttctttatttaa |
362 |
Q |
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| T |
12814602 |
cattgattatatccgagggcaagaataactaaataatctttctttatttaa |
12814552 |
T |
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