View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2124_high_5 (Length: 326)
Name: NF2124_high_5
Description: NF2124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2124_high_5 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 277; Significance: 1e-155; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 7 - 313
Target Start/End: Complemental strand, 40854026 - 40853716
Alignment:
| Q |
7 |
ggaggagcacagatacaggtaattgttt-gcttcttcaatattcaccattttattatagatcacctttccttgctatttgaagtaaatttttgtacgtgt |
105 |
Q |
| |
|
|||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40854026 |
ggaggatcacagatacaggtaattgttttgcttcttcaatattcaccattttattatagatcacctttccttgctatttgaagtaaatttttgtacgtgt |
40853927 |
T |
|
| Q |
106 |
gtgtgaagggattgaaacttgtatgttttattaaacattgtgcactattttgcttatgcaatttcacaagcccatttcttctaatctctatgatgctatc |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
40853926 |
gtgtgaagggattgaaacttgtatgttttattaaacattgtgcactattttgcttatgcaatttcacaagcccatttcttctaatctctatgatgctacc |
40853827 |
T |
|
| Q |
206 |
ctatgaatcaaaatatgacattgtattctatgtgc---ttatatttaataatttgcattccagatggatacttaagtgtcatgcctgcttcactgttact |
302 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40853826 |
ctatgaatcaaaatatgacattgtattctatgtgcttattatatttattaatttgcattccagatggatacttaagtgtcatgcctgcttcactgttact |
40853727 |
T |
|
| Q |
303 |
gctgaaattga |
313 |
Q |
| |
|
||||||||||| |
|
|
| T |
40853726 |
gctgaaattga |
40853716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 35 - 312
Target Start/End: Complemental strand, 40858402 - 40858130
Alignment:
| Q |
35 |
gcttcttcaatattcaccattttattatagatcacctttccttgctatttgaagtaaatttttgtacgtgtgtgtgaagggattgaaacttgtatgtttt |
134 |
Q |
| |
|
|||||| ||||||||||||| |||||||||||||||| ||||||||||||| ||||||||||| | ||||||| |||||||||||||||||||||| |
|
|
| T |
40858402 |
gcttctacaatattcaccatgttattatagatcacctgtccttgctatttggagtaaattttttaa----tgtgtgacgggattgaaacttgtatgtttt |
40858307 |
T |
|
| Q |
135 |
attaaacattgtgcactattttgcttatgcaatttcacaagcccatttcttctaatctctatgatgctatcctatgaatcaaaatatgacattgtattct |
234 |
Q |
| |
|
|||||||||||||| |||| |||| ||||||||||||| ||| ||||||| |||||||| ||| |||||||| ||| || |||||| ||||||| | |
|
|
| T |
40858306 |
gttaaacattgtgcagtattatgctcatgcaatttcacatgcctatttcttataatctct--gatactatcctacgaagcacaatatgctgttgtatttt |
40858209 |
T |
|
| Q |
235 |
atgtgcttatattt-aataatttgcattccagatggatacttaagtgtcatgcctgcttcactgttactgctgaaattg |
312 |
Q |
| |
|
| |||||||| ||| ||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40858208 |
acgtgcttatcttttaattatttgcattccagatggatactcaagtgtcatgcctgcttcactgttactgctgaaattg |
40858130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University