View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2124_high_6 (Length: 258)

Name: NF2124_high_6
Description: NF2124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2124_high_6
NF2124_high_6
[»] scaffold0470 (1 HSPs)
scaffold0470 (13-258)||(12188-12435)
[»] chr8 (2 HSPs)
chr8 (13-258)||(6622766-6623013)
chr8 (13-255)||(6789534-6789778)


Alignment Details
Target: scaffold0470 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: scaffold0470
Description:

Target: scaffold0470; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 13 - 258
Target Start/End: Original strand, 12188 - 12435
Alignment:
Q  13 tccatagttccacattgttggaagcttatcatgcagtaatttccatctgattaaaataatttttgacggcacggaagtgtcccacaaatatatacctcac 112  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12188 tccatagttccacattgttggaagcatatcatgcagtaatttccatctgattaaaataatttttgacggcacggaagtgtcccacaaatatatacctcac 12287  T
Q  113 tgcaaatc--gatttcaccttttcttgttggcagagtgtctttttcgagtgaggtaagacctctctatttataggcgcgtataccctaattttgcgaaaa 210  Q
    ||||||||  ||||||||||||||||||||| |||||||||||||| ||| |||||||||||||||||||||||||| ||| ||||||||||||||||||    
T  12288 tgcaaatcacgatttcaccttttcttgttggtagagtgtctttttcaagtaaggtaagacctctctatttataggcgagtaaaccctaattttgcgaaaa 12387  T
Q  211 agctattgcacgatgcacacaagctcctgcacatcagatcttagaaaa 258  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  12388 agctattgcacgatgcacacaagctcctgcacatcagatcttagaaaa 12435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 13 - 258
Target Start/End: Original strand, 6622766 - 6623013
Alignment:
Q  13 tccatagttccacattgttggaagcttatcatgcagtaatttccatctgattaaaataatttttgacggcacggaagtgtcccacaaatatatacctcac 112  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6622766 tccatagttccacattgttggaagcctatcatgcagtaatttccatctgattaaaataatttttgacggcacggaagtgtcccacaaatatatacctcac 6622865  T
Q  113 tgcaaatc--gatttcaccttttcttgttggcagagtgtctttttcgagtgaggtaagacctctctatttataggcgcgtataccctaattttgcgaaaa 210  Q
    ||||||||  ||||||||||||||||||||| |||||||||||||| ||| |||||||||||||||||||||||||| ||| ||||||||||||||||||    
T  6622866 tgcaaatcacgatttcaccttttcttgttggtagagtgtctttttcaagtaaggtaagacctctctatttataggcgagtaaaccctaattttgcgaaaa 6622965  T
Q  211 agctattgcacgatgcacacaagctcctgcacatcagatcttagaaaa 258  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  6622966 agctattgcacgatgcacacaagctcctgcacatcagatcttagaaaa 6623013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 13 - 255
Target Start/End: Original strand, 6789534 - 6789778
Alignment:
Q  13 tccatagttccacattgttggaagcttatcatgcagtaatttccatctgattaaaataatttttgacggcacggaagtgtcccacaaatatatacctcac 112  Q
    |||| |||||||||||||||||||| |||||||||||||||||||||  ||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  6789534 tccacagttccacattgttggaagcctatcatgcagtaatttccatccaattaaaataatttttgacggcacagaagtgtcccacaaatatatacctcac 6789633  T
Q  113 tgcaaat--cgatttcaccttttcttgttggcagagtgtctttttcgagtgaggtaagacctctctatttataggcgcgtataccctaattttgcgaaaa 210  Q
    |||||||  |||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| | ||| |||| |||||| |||||     
T  6789634 tgcaaatcacgatttcaccttttcttgttggtagagtgtctttttcaagtgaggtaagacctctctatttataggtgagtaaacccaaatttttcgaaac 6789733  T
Q  211 agctattgcacgatgcacacaagctcctgcacatcagatcttaga 255  Q
    || |||||| |||||| |||||| || ||||||||| ||||||||    
T  6789734 agttattgcgcgatgcgcacaagttcatgcacatcacatcttaga 6789778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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