View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2124_low_13 (Length: 230)
Name: NF2124_low_13
Description: NF2124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2124_low_13 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 180; Significance: 2e-97; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 12751539 - 12751312
Alignment:
| Q |
1 |
cactttgtatgcatttctttctgagcaatgaaaatgatctataaaaggatataatatgacttaaacaaatgcctttcccagttccttctttagttgttac |
100 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
12751539 |
cacttcgtatgcatttctttctgagcaatgaaaatgatctataaaaggatataatatgacttaaacaaatgcctttcccagttccttcttcagttgttac |
12751440 |
T |
|
| Q |
101 |
tattgttagcatttgtactagaatcttaaaaatcaatgccgaggnnnnnnnnccttccatgggacaagaggtcatatgagaatgatcttcctgatcatga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
12751439 |
tattgttagcatttgtactagaatcttaaaaatcaatgccgagg-tttttttccttccacgggacaagaggtcacatgagaatgatcttcctgatcatga |
12751341 |
T |
|
| Q |
201 |
ccttacaagcataggaaacaccaacaaac |
229 |
Q |
| |
|
||||||||||| ||||||||||||||||| |
|
|
| T |
12751340 |
ccttacaagcacaggaaacaccaacaaac |
12751312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 12814501 - 12814274
Alignment:
| Q |
1 |
cactttgtatgcatttctttctgagcaatgaaaatgatctataaaaggatataatatgacttaaacaaatgcctttcccagttccttctttagttgttac |
100 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
12814501 |
cacttcgtatgcatttctttctgagcaatgaaaatgatctataaaaggatataatatgacttaaacaaatgcctttcccagttccttcttcagttgttac |
12814402 |
T |
|
| Q |
101 |
tattgttagcatttgtactagaatcttaaaaatcaatgccgaggnnnnnnnnccttccatgggacaagaggtcatatgagaatgatcttcctgatcatga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
12814401 |
tattgttagcatttgtactagaatcttaaaaatcaatgccgaggtttttttt-cttccacgggacaagaggtcacatgagaatgatcttcctgatcatga |
12814303 |
T |
|
| Q |
201 |
ccttacaagcataggaaacaccaacaaac |
229 |
Q |
| |
|
||||||||||| ||||||||||||||||| |
|
|
| T |
12814302 |
ccttacaagcacaggaaacaccaacaaac |
12814274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University