View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2124_low_4 (Length: 341)
Name: NF2124_low_4
Description: NF2124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2124_low_4 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 11 - 323
Target Start/End: Original strand, 27360122 - 27360445
Alignment:
| Q |
11 |
cacagaagaagagaaaaggcaaatccactcaactcgctacaaaacaggaccgctaacacctagcgatacaagcaatggaatcaacagaat-ttcatttta |
109 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
27360122 |
cacagaagaagagaaa-ggcaaatccactcaactcgctacaaaagaggaccgctaacacctagcgatacaagcaatggaatcaacagaacattcatttta |
27360220 |
T |
|
| Q |
110 |
tgaacacaatgctctactatcaaattggtagagtaatggttattgcttaggcgaatatccattgcatgaagcatgtcatgagattcaagggtctactatc |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27360221 |
tgaacacaatgctctactatcaaattggtagagtaatggttattgcttaggtgaatatccattgcatgaagcatgtcatgagattcaagggtctactatc |
27360320 |
T |
|
| Q |
210 |
actttgaaagtttgatcaaacta---tcttattatgtttctgttcgtacttattttctgagctgaatattcaaaccaagca--------ttaatccaaga |
298 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
27360321 |
actttgaaagtttgatcaaactatcttcttattatgtttctgttcatacttattttctgagctgaatattcaaaccaagcaagtggtatctaatccaaga |
27360420 |
T |
|
| Q |
299 |
acaatcctgtttccaacaagcaacc |
323 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
27360421 |
acaatcctgtttccaacaagcaacc |
27360445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University