View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21250_high_4 (Length: 285)

Name: NF21250_high_4
Description: NF21250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21250_high_4
NF21250_high_4
[»] chr5 (6 HSPs)
chr5 (12-210)||(2950029-2950227)
chr5 (227-268)||(25412361-25412402)
chr5 (227-268)||(30182205-30182246)
chr5 (227-268)||(36074555-36074596)
chr5 (227-268)||(13342659-13342700)
chr5 (227-260)||(39469067-39469100)
[»] chr6 (10 HSPs)
chr6 (223-268)||(5406708-5406753)
chr6 (223-268)||(5411033-5411078)
chr6 (223-268)||(5407476-5407521)
chr6 (223-268)||(5411801-5411846)
chr6 (227-268)||(33160882-33160923)
chr6 (225-268)||(16452987-16453030)
chr6 (227-268)||(30835047-30835088)
chr6 (227-268)||(5413976-5414017)
chr6 (227-268)||(31405183-31405224)
chr6 (227-268)||(9183558-9183599)
[»] chr3 (8 HSPs)
chr3 (223-268)||(5258675-5258720)
chr3 (225-268)||(7764028-7764071)
chr3 (227-268)||(5260833-5260874)
chr3 (227-268)||(7761843-7761884)
chr3 (223-268)||(9634850-9634895)
chr3 (227-268)||(9636658-9636699)
chr3 (226-268)||(3393183-3393225)
chr3 (227-268)||(45094761-45094802)
[»] chr8 (8 HSPs)
chr8 (227-268)||(17982251-17982292)
chr8 (223-268)||(34254858-34254903)
chr8 (227-268)||(44303454-44303495)
chr8 (226-268)||(31217852-31217894)
chr8 (227-268)||(1746767-1746808)
chr8 (227-268)||(19948850-19948891)
chr8 (227-268)||(34257034-34257075)
chr8 (234-268)||(19945870-19945904)
[»] chr7 (4 HSPs)
chr7 (227-268)||(35853530-35853571)
chr7 (227-268)||(23554618-23554659)
chr7 (226-268)||(24515270-24515312)
chr7 (227-268)||(29990653-29990694)
[»] chr4 (8 HSPs)
chr4 (227-268)||(48142652-48142693)
chr4 (230-268)||(52095909-52095947)
chr4 (227-268)||(30000982-30001023)
chr4 (227-265)||(5370609-5370647)
chr4 (230-268)||(56179154-56179192)
chr4 (229-268)||(52083185-52083224)
chr4 (229-268)||(52094192-52094231)
chr4 (227-260)||(26176180-26176213)
[»] chr2 (9 HSPs)
chr2 (227-268)||(2334945-2334986)
chr2 (227-268)||(4503642-4503683)
chr2 (227-268)||(6595524-6595565)
chr2 (227-268)||(36206193-36206234)
chr2 (227-268)||(36988624-36988665)
chr2 (225-268)||(45099349-45099392)
chr2 (227-268)||(5723760-5723801)
chr2 (227-268)||(34389432-34389473)
chr2 (227-260)||(2837407-2837440)
[»] scaffold1519 (1 HSPs)
scaffold1519 (227-268)||(484-525)
[»] scaffold0016 (1 HSPs)
scaffold0016 (227-268)||(114165-114206)
[»] chr1 (5 HSPs)
chr1 (227-268)||(13316828-13316869)
chr1 (227-268)||(20762268-20762309)
chr1 (227-268)||(3188929-3188970)
chr1 (227-268)||(3197746-3197787)
chr1 (227-268)||(3206564-3206605)
[»] scaffold0002 (1 HSPs)
scaffold0002 (227-268)||(434157-434199)


Alignment Details
Target: chr5 (Bit Score: 199; Significance: 1e-108; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 12 - 210
Target Start/End: Complemental strand, 2950227 - 2950029
Alignment:
Q  12 ataggtcataagactcataactcatactaattaacagtaacctacctaaatcatggtaattgctgcaatttggtcaagtccgtggctcaatggccagaaa 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2950227 ataggtcataagactcataactcatactaattaacagtaacctacctaaatcatggtaattgctgcaatttggtcaagtccgtggctcaatggccagaaa 2950128  T
Q  112 gggtggtgctcaataactaaactcttatgtagctttttccttttcaagtcttttgacctagctagattaggattagtttctgttaattttgtcattaag 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2950127 gggtggtgctcaataactaaactcttatgtagctttttccttttcaagtcttttgacctagctagattaggattagtttctgttaattttgtcattaag 2950029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 227 - 268
Target Start/End: Original strand, 25412361 - 25412402
Alignment:
Q  227 tgttgtgtatgtcttcaaattgcaaagttgggaagcagagaa 268  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  25412361 tgttgtgtatgtcttcaaattgcaaagttgggaagcagagaa 25412402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 227 - 268
Target Start/End: Original strand, 30182205 - 30182246
Alignment:
Q  227 tgttgtgtatgtcttcaaattgcaaagttgggaagcagagaa 268  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  30182205 tgttgtgtatgtcttcaaattgcaaagttgggaagcagagaa 30182246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 227 - 268
Target Start/End: Complemental strand, 36074596 - 36074555
Alignment:
Q  227 tgttgtgtatgtcttcaaattgcaaagttgggaagcagagaa 268  Q
    ||||||||||||||||||||||||||||||| ||||||||||    
T  36074596 tgttgtgtatgtcttcaaattgcaaagttggtaagcagagaa 36074555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 227 - 268
Target Start/End: Original strand, 13342659 - 13342700
Alignment:
Q  227 tgttgtgtatgtcttcaaattgcaaagttgggaagcagagaa 268  Q
    |||||||||||||||||||||| |||| ||||||||||||||    
T  13342659 tgttgtgtatgtcttcaaattgtaaagctgggaagcagagaa 13342700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 260
Target Start/End: Complemental strand, 39469100 - 39469067
Alignment:
Q  227 tgttgtgtatgtcttcaaattgcaaagttgggaa 260  Q
    |||||| |||||||||||||||||||||||||||    
T  39469100 tgttgtttatgtcttcaaattgcaaagttgggaa 39469067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 3e-17; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 223 - 268
Target Start/End: Complemental strand, 5406753 - 5406708
Alignment:
Q  223 agaatgttgtgtatgtcttcaaattgcaaagttgggaagcagagaa 268  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  5406753 agaatgttgtgtatgtcttcaaattgcaaagttgggaagcagagaa 5406708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 223 - 268
Target Start/End: Complemental strand, 5411078 - 5411033
Alignment:
Q  223 agaatgttgtgtatgtcttcaaattgcaaagttgggaagcagagaa 268  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  5411078 agaatgttgtgtatgtcttcaaattgcaaagttgggaagcagagaa 5411033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 223 - 268
Target Start/End: Complemental strand, 5407521 - 5407476
Alignment:
Q  223 agaatgttgtgtatgtcttcaaattgcaaagttgggaagcagagaa 268  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||    
T  5407521 agaatgttgtgtatgtcttcaaattgcaaagttgggaagtagagaa 5407476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 223 - 268
Target Start/End: Complemental strand, 5411846 - 5411801
Alignment:
Q  223 agaatgttgtgtatgtcttcaaattgcaaagttgggaagcagagaa 268  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||    
T  5411846 agaatgttgtgtatgtcttcaaattgcaaagttgggaagtagagaa 5411801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 227 - 268
Target Start/End: Complemental strand, 33160923 - 33160882
Alignment:
Q  227 tgttgtgtatgtcttcaaattgcaaagttgggaagcagagaa 268  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  33160923 tgttgtgtatgtcttcaaattgcaaagttgggaagcagagaa 33160882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 225 - 268
Target Start/End: Complemental strand, 16453030 - 16452987
Alignment:
Q  225 aatgttgtgtatgtcttcaaattgcaaagttgggaagcagagaa 268  Q
    |||||||||||||||||||||||| |||||||||||||||||||    
T  16453030 aatgttgtgtatgtcttcaaattgtaaagttgggaagcagagaa 16452987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 227 - 268
Target Start/End: Complemental strand, 30835088 - 30835047
Alignment:
Q  227 tgttgtgtatgtcttcaaattgcaaagttgggaagcagagaa 268  Q
    ||||||||||||||||||||||||||||| ||||||||||||    
T  30835088 tgttgtgtatgtcttcaaattgcaaagtttggaagcagagaa 30835047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 227 - 268
Target Start/End: Complemental strand, 5414017 - 5413976
Alignment:
Q  227 tgttgtgtatgtcttcaaattgcaaagttgggaagcagagaa 268  Q
    ||||||||||||| ||||||||||||| ||||||||||||||    
T  5414017 tgttgtgtatgtcctcaaattgcaaagatgggaagcagagaa 5413976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 227 - 268
Target Start/End: Complemental strand, 31405224 - 31405183
Alignment:
Q  227 tgttgtgtatgtcttcaaattgcaaagttgggaagcagagaa 268  Q
    |||||||||||||||||||||| |||||||||||| ||||||    
T  31405224 tgttgtgtatgtcttcaaattgtaaagttgggaagtagagaa 31405183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 268
Target Start/End: Complemental strand, 9183599 - 9183558
Alignment:
Q  227 tgttgtgtatgtcttcaaattgcaaagttgggaagcagagaa 268  Q
    |||||| |||||||||||||||||||||||| || |||||||    
T  9183599 tgttgtttatgtcttcaaattgcaaagttggaaaacagagaa 9183558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 223 - 268
Target Start/End: Complemental strand, 5258720 - 5258675
Alignment:
Q  223 agaatgttgtgtatgtcttcaaattgcaaagttgggaagcagagaa 268  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  5258720 agaatgttgtgtatgtcttcaaattgcaaagttgggaagcagagaa 5258675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 225 - 268
Target Start/End: Original strand, 7764028 - 7764071
Alignment:
Q  225 aatgttgtgtatgtcttcaaattgcaaagttgggaagcagagaa 268  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  7764028 aatgttgtgtatgtcttcaaattgcaaagttgggaagcagagaa 7764071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 227 - 268
Target Start/End: Complemental strand, 5260874 - 5260833
Alignment:
Q  227 tgttgtgtatgtcttcaaattgcaaagttgggaagcagagaa 268  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  5260874 tgttgtgtatgtcttcaaattgcaaagttgggaagcagagaa 5260833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 227 - 268
Target Start/End: Original strand, 7761843 - 7761884
Alignment:
Q  227 tgttgtgtatgtcttcaaattgcaaagttgggaagcagagaa 268  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  7761843 tgttgtgtatgtcttcaaattgcaaagttgggaagcagagaa 7761884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 223 - 268
Target Start/End: Complemental strand, 9634895 - 9634850
Alignment:
Q  223 agaatgttgtgtatgtcttcaaattgcaaagttgggaagcagagaa 268  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||    
T  9634895 agaatgttgtgtatgtcttcaaattgcaaagatgggaagcagagaa 9634850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 227 - 268
Target Start/End: Complemental strand, 9636699 - 9636658
Alignment:
Q  227 tgttgtgtatgtcttcaaattgcaaagttgggaagcagagaa 268  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  9636699 tgttgtgtatgtcttcaaattgcaaagttgggaagcagagaa 9636658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 226 - 268
Target Start/End: Original strand, 3393183 - 3393225
Alignment:
Q  226 atgttgtgtatgtcttcaaattgcaaagttgggaagcagagaa 268  Q
    |||||||||||||||||||||||||||||| ||||||||||||    
T  3393183 atgttgtgtatgtcttcaaattgcaaagttcggaagcagagaa 3393225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 227 - 268
Target Start/End: Original strand, 45094761 - 45094802
Alignment:
Q  227 tgttgtgtatgtcttcaaattgcaaagttgggaagcagagaa 268  Q
    ||||||||||||||||||||| ||||||||||||||||||||    
T  45094761 tgttgtgtatgtcttcaaattacaaagttgggaagcagagaa 45094802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 227 - 268
Target Start/End: Original strand, 17982251 - 17982292
Alignment:
Q  227 tgttgtgtatgtcttcaaattgcaaagttgggaagcagagaa 268  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  17982251 tgttgtgtatgtcttcaaattgcaaagttgggaagcagagaa 17982292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 223 - 268
Target Start/End: Complemental strand, 34254903 - 34254858
Alignment:
Q  223 agaatgttgtgtatgtcttcaaattgcaaagttgggaagcagagaa 268  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||    
T  34254903 agaatgttgcgtatgtcttcaaattgcaaagttgggaagcagagaa 34254858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 227 - 268
Target Start/End: Original strand, 44303454 - 44303495
Alignment:
Q  227 tgttgtgtatgtcttcaaattgcaaagttgggaagcagagaa 268  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  44303454 tgttgtgtatgtcttcaaattgcaaagttgggaagcagagaa 44303495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 226 - 268
Target Start/End: Original strand, 31217852 - 31217894
Alignment:
Q  226 atgttgtgtatgtcttcaaattgcaaagttgggaagcagagaa 268  Q
    ||||||| |||||||||||||||||||||||||||||||||||    
T  31217852 atgttgtttatgtcttcaaattgcaaagttgggaagcagagaa 31217894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 227 - 268
Target Start/End: Complemental strand, 1746808 - 1746767
Alignment:
Q  227 tgttgtgtatgtcttcaaattgcaaagttgggaagcagagaa 268  Q
    |||||||||||||||||||||| | |||||||||||||||||    
T  1746808 tgttgtgtatgtcttcaaattgtatagttgggaagcagagaa 1746767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 227 - 268
Target Start/End: Complemental strand, 19948891 - 19948850
Alignment:
Q  227 tgttgtgtatgtcttcaaattgcaaagttgggaagcagagaa 268  Q
    |||||| ||||||||||||||||||| |||||||||||||||    
T  19948891 tgttgtttatgtcttcaaattgcaaatttgggaagcagagaa 19948850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 227 - 268
Target Start/End: Complemental strand, 34257075 - 34257034
Alignment:
Q  227 tgttgtgtatgtcttcaaattgcaaagttgggaagcagagaa 268  Q
    |||| ||||||||||||||||||| |||||||||||||||||    
T  34257075 tgttatgtatgtcttcaaattgcacagttgggaagcagagaa 34257034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 234 - 268
Target Start/End: Complemental strand, 19945904 - 19945870
Alignment:
Q  234 tatgtcttcaaattgcaaagttgggaagcagagaa 268  Q
    ||||||||||||||||||||||| |||||||||||    
T  19945904 tatgtcttcaaattgcaaagttgagaagcagagaa 19945870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 227 - 268
Target Start/End: Original strand, 35853530 - 35853571
Alignment:
Q  227 tgttgtgtatgtcttcaaattgcaaagttgggaagcagagaa 268  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  35853530 tgttgtgtatgtcttcaaattgcaaagttgggaagcagagaa 35853571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 227 - 268
Target Start/End: Original strand, 23554618 - 23554659
Alignment:
Q  227 tgttgtgtatgtcttcaaattgcaaagttgggaagcagagaa 268  Q
    ||||||||||||||||||||||||||||||| ||||||||||    
T  23554618 tgttgtgtatgtcttcaaattgcaaagttggaaagcagagaa 23554659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 226 - 268
Target Start/End: Complemental strand, 24515312 - 24515270
Alignment:
Q  226 atgttgtgtatgtcttcaaattgcaaagttgggaagcagagaa 268  Q
    |||||||||||||||| ||||||||||||||| ||||||||||    
T  24515312 atgttgtgtatgtcttgaaattgcaaagttggaaagcagagaa 24515270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 227 - 268
Target Start/End: Original strand, 29990653 - 29990694
Alignment:
Q  227 tgttgtgtatgtcttcaaattgcaaagttgggaagcagagaa 268  Q
    ||||||||||||||| ||||| ||||||||||||||||||||    
T  29990653 tgttgtgtatgtctttaaattacaaagttgggaagcagagaa 29990694  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 227 - 268
Target Start/End: Original strand, 48142652 - 48142693
Alignment:
Q  227 tgttgtgtatgtcttcaaattgcaaagttgggaagcagagaa 268  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  48142652 tgttgtgtatgtcttcaaattgcaaagttgggaagcagagaa 48142693  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 230 - 268
Target Start/End: Complemental strand, 52095947 - 52095909
Alignment:
Q  230 tgtgtatgtcttcaaattgcaaagttgggaagcagagaa 268  Q
    |||||||||||||||||||||||||||||||||||||||    
T  52095947 tgtgtatgtcttcaaattgcaaagttgggaagcagagaa 52095909  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 227 - 268
Target Start/End: Complemental strand, 30001023 - 30000982
Alignment:
Q  227 tgttgtgtatgtcttcaaattgcaaagttgggaagcagagaa 268  Q
    |||||||||||||||||||||| |||||||||||||||||||    
T  30001023 tgttgtgtatgtcttcaaattgtaaagttgggaagcagagaa 30000982  T

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Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 227 - 265
Target Start/End: Complemental strand, 5370647 - 5370609
Alignment:
Q  227 tgttgtgtatgtcttcaaattgcaaagttgggaagcaga 265  Q
    |||||||||||||||||||||| ||||||||||||||||    
T  5370647 tgttgtgtatgtcttcaaattgtaaagttgggaagcaga 5370609  T

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Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 230 - 268
Target Start/End: Complemental strand, 56179192 - 56179154
Alignment:
Q  230 tgtgtatgtcttcaaattgcaaagttgggaagcagagaa 268  Q
    |||||||||||||||||||||||||||| ||||||||||    
T  56179192 tgtgtatgtcttcaaattgcaaagttggaaagcagagaa 56179154  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 229 - 268
Target Start/End: Complemental strand, 52083224 - 52083185
Alignment:
Q  229 ttgtgtatgtcttcaaattgcaaagttgggaagcagagaa 268  Q
    ||||||||||||||||||||||||||||  ||||||||||    
T  52083224 ttgtgtatgtcttcaaattgcaaagttgaaaagcagagaa 52083185  T

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Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 229 - 268
Target Start/End: Complemental strand, 52094231 - 52094192
Alignment:
Q  229 ttgtgtatgtcttcaaattgcaaagttgggaagcagagaa 268  Q
    ||||||||||||||||||||||||||||  ||||||||||    
T  52094231 ttgtgtatgtcttcaaattgcaaagttgaaaagcagagaa 52094192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 260
Target Start/End: Complemental strand, 26176213 - 26176180
Alignment:
Q  227 tgttgtgtatgtcttcaaattgcaaagttgggaa 260  Q
    |||||| |||||||||||||||||||||||||||    
T  26176213 tgttgtttatgtcttcaaattgcaaagttgggaa 26176180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 227 - 268
Target Start/End: Complemental strand, 2334986 - 2334945
Alignment:
Q  227 tgttgtgtatgtcttcaaattgcaaagttgggaagcagagaa 268  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  2334986 tgttgtgtatgtcttcaaattgcaaagttgggaagcagagaa 2334945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 227 - 268
Target Start/End: Complemental strand, 4503683 - 4503642
Alignment:
Q  227 tgttgtgtatgtcttcaaattgcaaagttgggaagcagagaa 268  Q
    |||||| |||||||||||||||||||||||||||||||||||    
T  4503683 tgttgtttatgtcttcaaattgcaaagttgggaagcagagaa 4503642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 227 - 268
Target Start/End: Complemental strand, 6595565 - 6595524
Alignment:
Q  227 tgttgtgtatgtcttcaaattgcaaagttgggaagcagagaa 268  Q
    |||||||||| |||||||||||||||||||||||||||||||    
T  6595565 tgttgtgtatatcttcaaattgcaaagttgggaagcagagaa 6595524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 227 - 268
Target Start/End: Complemental strand, 36206234 - 36206193
Alignment:
Q  227 tgttgtgtatgtcttcaaattgcaaagttgggaagcagagaa 268  Q
    |||||| |||||||||||||||||||||||||||||||||||    
T  36206234 tgttgtttatgtcttcaaattgcaaagttgggaagcagagaa 36206193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 227 - 268
Target Start/End: Complemental strand, 36988665 - 36988624
Alignment:
Q  227 tgttgtgtatgtcttcaaattgcaaagttgggaagcagagaa 268  Q
    ||||||||||||||||||||||||||||||| ||||||||||    
T  36988665 tgttgtgtatgtcttcaaattgcaaagttggaaagcagagaa 36988624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 225 - 268
Target Start/End: Original strand, 45099349 - 45099392
Alignment:
Q  225 aatgttgtgtatgtcttcaaattgcaaagttgggaagcagagaa 268  Q
    ||||||||||||||||||||||||||||||||  ||||||||||    
T  45099349 aatgttgtgtatgtcttcaaattgcaaagttgaaaagcagagaa 45099392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 227 - 268
Target Start/End: Complemental strand, 5723801 - 5723760
Alignment:
Q  227 tgttgtgtatgtcttcaaattgcaaagttgggaagcagagaa 268  Q
    |||||||||||||||||||||| |||||||||||| ||||||    
T  5723801 tgttgtgtatgtcttcaaattgtaaagttgggaagtagagaa 5723760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 227 - 268
Target Start/End: Complemental strand, 34389473 - 34389432
Alignment:
Q  227 tgttgtgtatgtcttcaaattgcaaagttgggaagcagagaa 268  Q
    |||| |||||||||||||||||||||||||| ||||||||||    
T  34389473 tgttatgtatgtcttcaaattgcaaagttggaaagcagagaa 34389432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 260
Target Start/End: Complemental strand, 2837440 - 2837407
Alignment:
Q  227 tgttgtgtatgtcttcaaattgcaaagttgggaa 260  Q
    |||||| |||||||||||||||||||||||||||    
T  2837440 tgttgtttatgtcttcaaattgcaaagttgggaa 2837407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1519 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold1519
Description:

Target: scaffold1519; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 227 - 268
Target Start/End: Original strand, 484 - 525
Alignment:
Q  227 tgttgtgtatgtcttcaaattgcaaagttgggaagcagagaa 268  Q
    ||||||||||| ||||||||||||||||||||||||||||||    
T  484 tgttgtgtatgacttcaaattgcaaagttgggaagcagagaa 525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 227 - 268
Target Start/End: Original strand, 114165 - 114206
Alignment:
Q  227 tgttgtgtatgtcttcaaattgcaaagttgggaagcagagaa 268  Q
    |||||||||||| |||||||||||||||||||||||||||||    
T  114165 tgttgtgtatgttttcaaattgcaaagttgggaagcagagaa 114206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 227 - 268
Target Start/End: Complemental strand, 13316869 - 13316828
Alignment:
Q  227 tgttgtgtatgtcttcaaattgcaaagttgggaagcagagaa 268  Q
    |||||||||| |||||||||||||||||||||||||||||||    
T  13316869 tgttgtgtatctcttcaaattgcaaagttgggaagcagagaa 13316828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 227 - 268
Target Start/End: Original strand, 20762268 - 20762309
Alignment:
Q  227 tgttgtgtatgtcttcaaattgcaaagttgggaagcagagaa 268  Q
    |||||||||||| |||||||||||||||||||||||||||||    
T  20762268 tgttgtgtatgttttcaaattgcaaagttgggaagcagagaa 20762309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 227 - 268
Target Start/End: Original strand, 3188929 - 3188970
Alignment:
Q  227 tgttgtgtatgtcttcaaattgcaaagttgggaagcagagaa 268  Q
    |||||||||||||||||||||| |||||||| ||||||||||    
T  3188929 tgttgtgtatgtcttcaaattgtaaagttggaaagcagagaa 3188970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 227 - 268
Target Start/End: Original strand, 3197746 - 3197787
Alignment:
Q  227 tgttgtgtatgtcttcaaattgcaaagttgggaagcagagaa 268  Q
    |||||||||||||||||||||| |||||||| ||||||||||    
T  3197746 tgttgtgtatgtcttcaaattgtaaagttggaaagcagagaa 3197787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 227 - 268
Target Start/End: Original strand, 3206564 - 3206605
Alignment:
Q  227 tgttgtgtatgtcttcaaattgcaaagttgggaagcagagaa 268  Q
    |||||||||||||||||||||| |||||||| ||||||||||    
T  3206564 tgttgtgtatgtcttcaaattgtaaagttggaaagcagagaa 3206605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 227 - 268
Target Start/End: Original strand, 434157 - 434199
Alignment:
Q  227 tgttgtgta-tgtcttcaaattgcaaagttgggaagcagagaa 268  Q
    ||||||||| |||||||||||||||||||||||||||||||||    
T  434157 tgttgtgtaatgtcttcaaattgcaaagttgggaagcagagaa 434199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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