View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21250_low_1 (Length: 714)
Name: NF21250_low_1
Description: NF21250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21250_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 517; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 517; E-Value: 0
Query Start/End: Original strand, 14 - 692
Target Start/End: Original strand, 21383994 - 21384675
Alignment:
| Q |
14 |
agatgaaggagttaaagaggacccttatattcaaaagtttacgatgaagatgtgcagtcaaatcatttgattttttaaaatgaaactggtt-taacctat |
112 |
Q |
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| T |
21383994 |
agatgagggagttaaagaggacccttatatccaaaagtttacgatgaagatatgcagtcaaatcatttgattttttagaatgaaactggttataacctat |
21384093 |
T |
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| Q |
113 |
aatcgggaggtaaataatgtctaatcaataattatttttgtcagagttcaaacttcagaaactctattcgaaatttaattaatca----cttgatatact |
208 |
Q |
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| T |
21384094 |
aatcaggaggtaaataacgtctaatcaataattgtttccgtcagagttcaaactttagaaactctattcaaaatttgattaatcaatcacttgatatact |
21384193 |
T |
|
| Q |
209 |
ccattcacttgattaaattggtcaatttgttttaattagtaaaaaataattaagaaaataa-gatattttgtggaagaaaataatctagtttatattaca |
307 |
Q |
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| T |
21384194 |
c-attcacttgattaaattggtcaatttgttttaagtagtaaaatataattaagaaaataaagatattttgtggaagaaaataatctagtttatattaca |
21384292 |
T |
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| Q |
308 |
tgcacatatattgacagatcattataatataaaccattacatctcacttgaacttttaaagtagggtttcacatcaaaggagnnnnnnnncaccaaatcc |
407 |
Q |
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| T |
21384293 |
tggacatatattgacagatcattataatataaaccattacatctgacttgaacttttaaagtaggtttcaacatcaaaggagaaaaaaa-caccaaatcc |
21384391 |
T |
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| Q |
408 |
tatctaggagtttcaacggtgtaaaactttacaccaatattaacttattaaagcatgggaaattcattagcccttaaactttaaacaaa-taaagtgggg |
506 |
Q |
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| T |
21384392 |
tatctaggagtttcaacggtgtaaaactttacaccaatattaacttattaaagcatgggaaattcattagcccttaaactttaaacaaaataaagtgggg |
21384491 |
T |
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| Q |
507 |
catataacttgtactactagtgggtaggagttgtatttggtggtgttgctgcagaagccacacgcttacctctctcagaacgactattctcagcaaacct |
606 |
Q |
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| T |
21384492 |
cata--acttgtactactagtgggtaggagttgtatttggtggtgttgctgcagaagccacacgctttcctctctcagaacgactattctcagcaaacct |
21384589 |
T |
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| Q |
607 |
aagacttggttgatgcaaacctttctgtacttcatcttcattccattcagaagtgtaatagtgttcttcattgatctcttttgaag |
692 |
Q |
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| T |
21384590 |
aagacttggttgatgcaaacctttctgtacttcatcttcattccattcagaagtgtaatagtgttcttcattgatctcttttgaag |
21384675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 466 - 692
Target Start/End: Complemental strand, 21373108 - 21372882
Alignment:
| Q |
466 |
gaaattcattagcccttaaactttaaacaaataaagtggggcatataacttgtactactagtgggtaggagttgtatttggtggtgttgctgcagaagcc |
565 |
Q |
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| T |
21373108 |
gaaattcattagcccttaaactttaaacaaataaagtggggcatataacttgtactactagtgggtaggagttgtatttggtggtgttgctgcagaagcc |
21373009 |
T |
|
| Q |
566 |
acacgcttacctctctcagaacgactattctcagcaaacctaagacttggttgatgcaaacctttctgtacttcatcttcattccattcagaagtgtaat |
665 |
Q |
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| T |
21373008 |
acacgctttcctctctcagaacgactattctcagcaaacctaagacttggttgatgcaaacctttctgtacttcatcttcattccattcagaagtgtaat |
21372909 |
T |
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| Q |
666 |
agtgttcttcattgatctcttttgaag |
692 |
Q |
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| T |
21372908 |
agtgttcttcattgatctcttttgaag |
21372882 |
T |
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