View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21250_low_12 (Length: 225)
Name: NF21250_low_12
Description: NF21250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21250_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 94; Significance: 5e-46; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 115 - 208
Target Start/End: Complemental strand, 35836237 - 35836144
Alignment:
| Q |
115 |
tggaacctttgggtttcttggtgagatagtaatagtaagcggtaccaccaagaatggcaacaagagctactgccatggttatcacctctacctt |
208 |
Q |
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| T |
35836237 |
tggaacctttgggtttcttggtgagatagtaatagtaagcggtaccaccaagaatggcaacaagagctactgccatggttatcacctctacctt |
35836144 |
T |
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Target: chr3; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 115 - 208
Target Start/End: Complemental strand, 35892954 - 35892861
Alignment:
| Q |
115 |
tggaacctttgggtttcttggtgagatagtaatagtaagcggtaccaccaagaatggcaacaagagctactgccatggttatcacctctacctt |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35892954 |
tggaacctttgggtttcttggtgagatagtaatagtaagcggtaccaccaagaatggcaacaagagctactgccatggttatcacctctacctt |
35892861 |
T |
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