View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21250_low_8 (Length: 279)
Name: NF21250_low_8
Description: NF21250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21250_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 1 - 265
Target Start/End: Complemental strand, 15306503 - 15306239
Alignment:
| Q |
1 |
tacacatcaagacttacattccctcctcccatctgtgaaactagagcagttggtatcaaaacagttgtgcccaacatcaccaagtaatgttgaaaaccaa |
100 |
Q |
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| T |
15306503 |
tacacatcaagacttacatttcctcctcccatctgtgaaactagagcagttggtatcaaaacagttgtgcccaacatcaccaagtaatgttgaaaaccaa |
15306404 |
T |
|
| Q |
101 |
gcattattgcctccgcttcattagaatcataattctaagctcaataatcaacattgaacacacaggtataacatgaacttggattaaatgcagtcagtgg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
15306403 |
gcattattgcctccgcttcattagaatcataattctaagctcaacaatcaacattgaacacgcaggtataacatgaacttggattaaatgcagtcagtgg |
15306304 |
T |
|
| Q |
201 |
tcagtcaacacctctaaaccatccgatcaagaccaaatgattcggatctaaagacagttttttat |
265 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15306303 |
tcagtcaacacctctaaaccatccgatcaagaccaaatgattcggatctaaagacagttttttat |
15306239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 9 - 123
Target Start/End: Original strand, 26475282 - 26475396
Alignment:
| Q |
9 |
aagacttacattccctcctcccatctgtgaaactagagcagttggtatcaaaacagttgtgcccaacatcaccaagtaatgttgaaaaccaagcattatt |
108 |
Q |
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|||||||||||| |||||||||||||| | |||||||| |||| || | ||||||||| || | |||||| | |||||||||||||||||| | ||| |
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| T |
26475282 |
aagacttacatttcctcctcccatctgaggaactagagagcttggaattagaacagttgtaccaagcatcacaaggtaatgttgaaaaccaagtaggatt |
26475381 |
T |
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| Q |
109 |
gcctccgcttcatta |
123 |
Q |
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||||| ||||||||| |
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| T |
26475382 |
gcctcggcttcatta |
26475396 |
T |
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