View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21250_low_9 (Length: 266)

Name: NF21250_low_9
Description: NF21250
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21250_low_9
NF21250_low_9
[»] chr4 (18 HSPs)
chr4 (21-67)||(46355546-46355592)
chr4 (178-231)||(46356116-46356169)
chr4 (172-231)||(12028374-12028433)
chr4 (20-67)||(20855128-20855175)
chr4 (188-231)||(20902517-20902560)
chr4 (176-231)||(46518337-46518392)
chr4 (105-211)||(20854991-20855098)
chr4 (188-231)||(21168419-21168462)
chr4 (188-231)||(45936608-45936651)
chr4 (176-231)||(46355381-46355436)
chr4 (188-231)||(49790619-49790662)
chr4 (184-231)||(51025991-51026038)
chr4 (188-231)||(51029612-51029655)
chr4 (188-231)||(11284243-11284286)
chr4 (176-231)||(32715271-32715326)
chr4 (188-231)||(38193366-38193409)
chr4 (188-231)||(40732467-40732510)
chr4 (150-231)||(17915135-17915216)
[»] chr2 (13 HSPs)
chr2 (176-231)||(17112306-17112361)
chr2 (176-231)||(34519903-34519958)
chr2 (188-231)||(10361184-10361227)
chr2 (149-231)||(2121285-2121367)
chr2 (177-231)||(34522709-34522763)
chr2 (188-231)||(27131376-27131419)
chr2 (176-231)||(30497833-30497888)
chr2 (188-231)||(31297642-31297685)
chr2 (188-231)||(4425021-4425064)
chr2 (188-231)||(6975964-6976007)
chr2 (188-231)||(24108472-24108515)
chr2 (192-231)||(44037905-44037944)
chr2 (188-230)||(3259875-3259917)
[»] chr1 (14 HSPs)
chr1 (176-231)||(28861927-28861982)
chr1 (176-231)||(51164590-51164645)
chr1 (188-231)||(15356395-15356438)
chr1 (172-231)||(46201210-46201269)
chr1 (177-231)||(14441116-14441169)
chr1 (158-231)||(7402845-7402917)
chr1 (179-231)||(51936604-51936656)
chr1 (188-231)||(35585105-35585148)
chr1 (176-231)||(42058666-42058721)
chr1 (188-231)||(46191751-46191794)
chr1 (150-211)||(13706108-13706169)
chr1 (174-231)||(26067182-26067239)
chr1 (178-230)||(18239454-18239506)
chr1 (195-231)||(34815693-34815729)
[»] chr8 (8 HSPs)
chr8 (150-231)||(16583192-16583273)
chr8 (158-231)||(26701831-26701904)
chr8 (156-224)||(14737651-14737719)
chr8 (188-231)||(8036252-8036295)
chr8 (188-231)||(41362984-41363027)
chr8 (176-231)||(21511192-21511247)
chr8 (188-231)||(27641532-27641575)
chr8 (176-231)||(38032148-38032203)
[»] chr3 (16 HSPs)
chr3 (183-231)||(32428798-32428846)
chr3 (172-224)||(50459629-50459681)
chr3 (188-231)||(30191667-30191710)
chr3 (176-231)||(40469241-40469296)
chr3 (188-231)||(46412472-46412515)
chr3 (188-231)||(48098160-48098203)
chr3 (24-60)||(54671229-54671265)
chr3 (188-231)||(10054306-10054349)
chr3 (188-231)||(11379780-11379823)
chr3 (188-231)||(14633427-14633470)
chr3 (188-231)||(21196419-21196462)
chr3 (188-231)||(21196604-21196647)
chr3 (188-231)||(47642792-47642835)
chr3 (188-231)||(47760933-47760976)
chr3 (195-238)||(50457424-50457467)
chr3 (183-231)||(33942758-33942806)
[»] chr7 (6 HSPs)
chr7 (174-229)||(10552700-10552755)
chr7 (176-231)||(47868485-47868540)
chr7 (188-231)||(2206305-2206348)
chr7 (184-231)||(42734401-42734448)
chr7 (184-231)||(42736958-42737005)
chr7 (155-231)||(41964787-41964863)
[»] scaffold0769 (1 HSPs)
scaffold0769 (177-231)||(745-799)
[»] chr5 (12 HSPs)
chr5 (176-231)||(1973339-1973394)
chr5 (188-231)||(11356361-11356404)
chr5 (176-231)||(26747696-26747751)
chr5 (158-208)||(6550008-6550058)
chr5 (188-236)||(16931285-16931333)
chr5 (188-231)||(4722334-4722377)
chr5 (188-231)||(17646640-17646683)
chr5 (188-231)||(22964669-22964712)
chr5 (150-203)||(7250060-7250113)
chr5 (150-211)||(23062201-23062262)
chr5 (195-231)||(41088084-41088120)
chr5 (183-231)||(43297795-43297843)
[»] scaffold0006 (1 HSPs)
scaffold0006 (176-229)||(18973-19026)
[»] chr6 (2 HSPs)
chr6 (183-231)||(22868432-22868480)
chr6 (188-231)||(12398776-12398819)
[»] scaffold0004 (1 HSPs)
scaffold0004 (188-231)||(130567-130610)


Alignment Details
Target: chr4 (Bit Score: 47; Significance: 6e-18; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 21 - 67
Target Start/End: Complemental strand, 46355592 - 46355546
Alignment:
Q  21 gtatgggatgtgtctaaatcttattctccagcggtagttaactaccg 67  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  46355592 gtatgggatgtgtctaaatcttattctccagcggtagttaactaccg 46355546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 178 - 231
Target Start/End: Original strand, 46356116 - 46356169
Alignment:
Q  178 ttttagtaaattacttatgtcaataggaagtattttatgtcagaaaagcaattt 231  Q
    ||||||||||||||||||||||||| |||||||| ||||||| |||||||||||    
T  46356116 ttttagtaaattacttatgtcaataagaagtattatatgtcaaaaaagcaattt 46356169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 172 - 231
Target Start/End: Original strand, 12028374 - 12028433
Alignment:
Q  172 gggactttttagtaaattacttatgtcaataggaagtattttatgtcagaaaagcaattt 231  Q
    ||||||||||||||||||| || |||||||||||||||||  |||||| |||||||||||    
T  12028374 gggactttttagtaaattatttgtgtcaataggaagtattccatgtcaaaaaagcaattt 12028433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 20 - 67
Target Start/End: Complemental strand, 20855175 - 20855128
Alignment:
Q  20 ggtatgggatgtgtctaaatcttattctccagcggtagttaactaccg 67  Q
    |||||| ||||||||||||||||||||| |||||||||||||||||||    
T  20855175 ggtatgagatgtgtctaaatcttattctacagcggtagttaactaccg 20855128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 188 - 231
Target Start/End: Original strand, 20902517 - 20902560
Alignment:
Q  188 ttacttatgtcaataggaagtattttatgtcagaaaagcaattt 231  Q
    |||||||||||||||||||||||| |||||||||||||||||||    
T  20902517 ttacttatgtcaataggaagtattctatgtcagaaaagcaattt 20902560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 176 - 231
Target Start/End: Original strand, 46518337 - 46518392
Alignment:
Q  176 ctttttagtaaattacttatgtcaataggaagtattttatgtcagaaaagcaattt 231  Q
    |||||||||||||||||| |||||||||||||||||  |||||| |||||||||||    
T  46518337 ctttttagtaaattacttgtgtcaataggaagtattccatgtcaaaaaagcaattt 46518392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 105 - 211
Target Start/End: Complemental strand, 20855098 - 20854991
Alignment:
Q  105 aagctgtgttaatgtacaacggaagttaactaccgctggaacaat-caacagtagttaactactaattgggactttttagtaaattacttatgtcaatag 203  Q
    ||||||||||| |||||| ||| |||||| |||||| ||| |||| |||| ||| ||||||||   | ||  |||||||||||||||||| |||||||||    
T  20855098 aagctgtgttagtgtacagcggtagttaattaccgccggatcaattcaacggtaattaactaccgctgggagctttttagtaaattacttgtgtcaatag 20854999  T
Q  204 gaagtatt 211  Q
     |||||||    
T  20854998 aaagtatt 20854991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 188 - 231
Target Start/End: Complemental strand, 21168462 - 21168419
Alignment:
Q  188 ttacttatgtcaataggaagtattttatgtcagaaaagcaattt 231  Q
    |||||| ||||||||||||||||| |||||||||||||||||||    
T  21168462 ttacttgtgtcaataggaagtattctatgtcagaaaagcaattt 21168419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 188 - 231
Target Start/End: Complemental strand, 45936651 - 45936608
Alignment:
Q  188 ttacttatgtcaataggaagtattttatgtcagaaaagcaattt 231  Q
    |||||| ||||||||||||||||| |||||||||||||||||||    
T  45936651 ttacttgtgtcaataggaagtattctatgtcagaaaagcaattt 45936608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 176 - 231
Target Start/End: Complemental strand, 46355436 - 46355381
Alignment:
Q  176 ctttttagtaaattacttatgtcaataggaagtattttatgtcagaaaagcaattt 231  Q
    |||||||||||||||||| ||| ||||||||||||| ||||||| |||| ||||||    
T  46355436 ctttttagtaaattacttgtgttaataggaagtattatatgtcaaaaaaacaattt 46355381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 188 - 231
Target Start/End: Complemental strand, 49790662 - 49790619
Alignment:
Q  188 ttacttatgtcaataggaagtattttatgtcagaaaagcaattt 231  Q
    |||||| ||||||||||||||||| |||||||||||||||||||    
T  49790662 ttacttgtgtcaataggaagtattctatgtcagaaaagcaattt 49790619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 184 - 231
Target Start/End: Complemental strand, 51026038 - 51025991
Alignment:
Q  184 taaattacttatgtcaataggaagtattttatgtcagaaaagcaattt 231  Q
    |||||||||| ||||||||||||||||| ||||||| |||||||||||    
T  51026038 taaattacttgtgtcaataggaagtattctatgtcaaaaaagcaattt 51025991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 188 - 231
Target Start/End: Original strand, 51029612 - 51029655
Alignment:
Q  188 ttacttatgtcaataggaagtattttatgtcagaaaagcaattt 231  Q
    |||||| ||||||||||||||||| |||||||||||||||||||    
T  51029612 ttacttgtgtcaataggaagtattctatgtcagaaaagcaattt 51029655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 188 - 231
Target Start/End: Complemental strand, 11284286 - 11284243
Alignment:
Q  188 ttacttatgtcaataggaagtattttatgtcagaaaagcaattt 231  Q
    ||||||||||||||||||||| |  |||||||||||||||||||    
T  11284286 ttacttatgtcaataggaagtttcctatgtcagaaaagcaattt 11284243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 176 - 231
Target Start/End: Complemental strand, 32715326 - 32715271
Alignment:
Q  176 ctttttagtaaattacttatgtcaataggaagtattttatgtcagaaaagcaattt 231  Q
    ||||||||||||||| || |||||||||||||| |  ||||||| |||||||||||    
T  32715326 ctttttagtaaattatttgtgtcaataggaagtttcctatgtcaaaaaagcaattt 32715271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 188 - 231
Target Start/End: Complemental strand, 38193409 - 38193366
Alignment:
Q  188 ttacttatgtcaataggaagtattttatgtcagaaaagcaattt 231  Q
    |||||| ||||||||||||||||| ||||||||||||| |||||    
T  38193409 ttacttgtgtcaataggaagtattctatgtcagaaaagtaattt 38193366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 188 - 231
Target Start/End: Original strand, 40732467 - 40732510
Alignment:
Q  188 ttacttatgtcaataggaagtattttatgtcagaaaagcaattt 231  Q
    |||||| ||||||||||||||||| |||||||||||| ||||||    
T  40732467 ttacttgtgtcaataggaagtattctatgtcagaaaaacaattt 40732510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 150 - 231
Target Start/End: Complemental strand, 17915216 - 17915135
Alignment:
Q  150 caacagtagttaactactaattgggactttttagtaaattacttatgtcaataggaagtattttatgtcagaaaagcaattt 231  Q
    |||| ||||||||||||   | ||| ||||||| |||||||||| |||||||| ||||||||  |||||  |||||||||||    
T  17915216 caacggtagttaactaccgctgggggctttttaataaattacttgtgtcaataagaagtattccatgtccaaaaagcaattt 17915135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 176 - 231
Target Start/End: Complemental strand, 17112361 - 17112306
Alignment:
Q  176 ctttttagtaaattacttatgtcaataggaagtattttatgtcagaaaagcaattt 231  Q
    |||||| ||||||||||| ||||||||||||||||||||||||| |||||||||||    
T  17112361 ctttttggtaaattacttgtgtcaataggaagtattttatgtcaaaaaagcaattt 17112306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 176 - 231
Target Start/End: Complemental strand, 34519958 - 34519903
Alignment:
Q  176 ctttttagtaaattacttatgtcaataggaagtattttatgtcagaaaagcaattt 231  Q
    |||||| ||||||||||| ||||||||||||||||||||||||| |||||||||||    
T  34519958 ctttttggtaaattacttgtgtcaataggaagtattttatgtcaaaaaagcaattt 34519903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 188 - 231
Target Start/End: Original strand, 10361184 - 10361227
Alignment:
Q  188 ttacttatgtcaataggaagtattttatgtcagaaaagcaattt 231  Q
    ||||||||||||||||||||||||||||||||||||| ||||||    
T  10361184 ttacttatgtcaataggaagtattttatgtcagaaaaacaattt 10361227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 149 - 231
Target Start/End: Original strand, 2121285 - 2121367
Alignment:
Q  149 tcaacagtagttaactactaattgggactttttagtaaattacttatgtcaataggaagtattttatgtcagaaaagcaattt 231  Q
    ||||| ||||||||||||   | | |||||||||||||||||||| |||||||||||||||||  |||||| |||| ||||||    
T  2121285 tcaacggtagttaactaccgttggagactttttagtaaattacttgtgtcaataggaagtattccatgtcaaaaaaacaattt 2121367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 177 - 231
Target Start/End: Original strand, 34522709 - 34522763
Alignment:
Q  177 tttttagtaaattacttatgtcaataggaagtattttatgtcagaaaagcaattt 231  Q
    ||||| ||||||||||| ||||||||||||||||| |||||||||||| ||||||    
T  34522709 tttttggtaaattacttgtgtcaataggaagtattctatgtcagaaaatcaattt 34522763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 188 - 231
Target Start/End: Original strand, 27131376 - 27131419
Alignment:
Q  188 ttacttatgtcaataggaagtattttatgtcagaaaagcaattt 231  Q
    |||||| ||||||||| |||||||||||||||||||||||||||    
T  27131376 ttacttgtgtcaatagaaagtattttatgtcagaaaagcaattt 27131419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 176 - 231
Target Start/End: Original strand, 30497833 - 30497888
Alignment:
Q  176 ctttttagtaaattacttatgtcaataggaagtattttatgtcagaaaagcaattt 231  Q
    ||||||||||||||| |||||||||||| |||||||  |||||| |||||||||||    
T  30497833 ctttttagtaaattatttatgtcaatagaaagtattacatgtcaaaaaagcaattt 30497888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 188 - 231
Target Start/End: Complemental strand, 31297685 - 31297642
Alignment:
Q  188 ttacttatgtcaataggaagtattttatgtcagaaaagcaattt 231  Q
    |||||| ||||||||||||||||| |||||||||||||||||||    
T  31297685 ttacttgtgtcaataggaagtattctatgtcagaaaagcaattt 31297642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 188 - 231
Target Start/End: Complemental strand, 4425064 - 4425021
Alignment:
Q  188 ttacttatgtcaataggaagtattttatgtcagaaaagcaattt 231  Q
    |||||| ||||||||||||||||| |||||||||||| ||||||    
T  4425064 ttacttgtgtcaataggaagtattctatgtcagaaaatcaattt 4425021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 188 - 231
Target Start/End: Complemental strand, 6976007 - 6975964
Alignment:
Q  188 ttacttatgtcaataggaagtattttatgtcagaaaagcaattt 231  Q
    |||||| ||||||||||||||||| ||| |||||||||||||||    
T  6976007 ttacttgtgtcaataggaagtattctatatcagaaaagcaattt 6975964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 188 - 231
Target Start/End: Original strand, 24108472 - 24108515
Alignment:
Q  188 ttacttatgtcaataggaagtattttatgtcagaaaagcaattt 231  Q
    |||||| ||||||||||||||||| |||||||||||| ||||||    
T  24108472 ttacttgtgtcaataggaagtattctatgtcagaaaaacaattt 24108515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 192 - 231
Target Start/End: Original strand, 44037905 - 44037944
Alignment:
Q  192 ttatgtcaataggaagtattttatgtcagaaaagcaattt 231  Q
    |||||||||||||||||||| |||||||||||| ||||||    
T  44037905 ttatgtcaataggaagtattctatgtcagaaaaacaattt 44037944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 230
Target Start/End: Complemental strand, 3259917 - 3259875
Alignment:
Q  188 ttacttatgtcaataggaagtattttatgtcagaaaagcaatt 230  Q
    |||||| ||||||||| ||||||| ||||||||||||||||||    
T  3259917 ttacttgtgtcaatagaaagtattctatgtcagaaaagcaatt 3259875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 176 - 231
Target Start/End: Complemental strand, 28861982 - 28861927
Alignment:
Q  176 ctttttagtaaattacttatgtcaataggaagtattttatgtcagaaaagcaattt 231  Q
    |||||||||||||||||| |||||||||||||||||| |||||| |||||||||||    
T  28861982 ctttttagtaaattacttgtgtcaataggaagtatttcatgtcaaaaaagcaattt 28861927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 176 - 231
Target Start/End: Complemental strand, 51164645 - 51164590
Alignment:
Q  176 ctttttagtaaattacttatgtcaataggaagtattttatgtcagaaaagcaattt 231  Q
    |||||| ||||||||||| ||||||||||||||||||||||||  |||||||||||    
T  51164645 ctttttggtaaattacttgtgtcaataggaagtattttatgtctaaaaagcaattt 51164590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 188 - 231
Target Start/End: Original strand, 15356395 - 15356438
Alignment:
Q  188 ttacttatgtcaataggaagtattttatgtcagaaaagcaattt 231  Q
    |||||| ||||||||||||||||| |||||||||||||||||||    
T  15356395 ttacttgtgtcaataggaagtattctatgtcagaaaagcaattt 15356438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 172 - 231
Target Start/End: Original strand, 46201210 - 46201269
Alignment:
Q  172 gggactttttagtaaattacttatgtcaataggaagtattttatgtcagaaaagcaattt 231  Q
    |||||||| ||||||||||||| |||||||||||| ||||  |||||| |||||||||||    
T  46201210 gggactttatagtaaattacttgtgtcaataggaaatattccatgtcaaaaaagcaattt 46201269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 177 - 231
Target Start/End: Original strand, 14441116 - 14441169
Alignment:
Q  177 tttttagtaaattacttatgtcaataggaagtattttatgtcagaaaagcaattt 231  Q
    ||||| ||||||||||| ||||||||||||||||| ||||||| |||||||||||    
T  14441116 tttttggtaaattacttgtgtcaataggaagtattctatgtca-aaaagcaattt 14441169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 158 - 231
Target Start/End: Complemental strand, 7402917 - 7402845
Alignment:
Q  158 gttaactactaattgggactttttagtaaattacttatgtcaataggaagtattttatgtcagaaaagcaattt 231  Q
    ||||||||| | | ||| |||||||||||||||||| |||||||||||||| |  ||||||| |||||||||||    
T  7402917 gttaactaccactaggggctttttagtaaattactt-tgtcaataggaagtttcctatgtcaaaaaagcaattt 7402845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 231
Target Start/End: Original strand, 51936604 - 51936656
Alignment:
Q  179 tttagtaaattacttatgtcaataggaagtattttatgtcagaaaagcaattt 231  Q
    |||||| | ||||||||||||||||||||||||  |||||| |||||||||||    
T  51936604 tttagtcatttacttatgtcaataggaagtattcaatgtcaaaaaagcaattt 51936656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 188 - 231
Target Start/End: Complemental strand, 35585148 - 35585105
Alignment:
Q  188 ttacttatgtcaataggaagtattttatgtcagaaaagcaattt 231  Q
    |||||||| ||||||||||||||| |||||||||||| ||||||    
T  35585148 ttacttatatcaataggaagtattctatgtcagaaaaacaattt 35585105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 176 - 231
Target Start/End: Original strand, 42058666 - 42058721
Alignment:
Q  176 ctttttagtaaattacttatgtcaataggaagtattttatgtcagaaaagcaattt 231  Q
    |||||| ||||||||||||||||||||| |||||||  || ||| |||||||||||    
T  42058666 ctttttggtaaattacttatgtcaatagcaagtattccatatcaaaaaagcaattt 42058721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 188 - 231
Target Start/End: Complemental strand, 46191794 - 46191751
Alignment:
Q  188 ttacttatgtcaataggaagtattttatgtcagaaaagcaattt 231  Q
    |||||| |||||||||||||| | ||||||||||||||||||||    
T  46191794 ttacttgtgtcaataggaagtttcttatgtcagaaaagcaattt 46191751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 150 - 211
Target Start/End: Complemental strand, 13706169 - 13706108
Alignment:
Q  150 caacagtagttaactactaattgggactttttagtaaattacttatgtcaataggaagtatt 211  Q
    |||| ||||||||||||   | ||| |||||||||||||||||| |||||||||||| ||||    
T  13706169 caacggtagttaactaccgttgggggctttttagtaaattacttgtgtcaataggaaatatt 13706108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 174 - 231
Target Start/End: Original strand, 26067182 - 26067239
Alignment:
Q  174 gactttttagtaaattacttatgtcaataggaagtattttatgtcagaaaagcaattt 231  Q
    ||||||||||||||||| |||||||||| | |||| |  ||||||| |||||||||||    
T  26067182 gactttttagtaaattatttatgtcaattgaaagtttcatatgtcaaaaaagcaattt 26067239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 178 - 230
Target Start/End: Complemental strand, 18239506 - 18239454
Alignment:
Q  178 ttttagtaaattacttatgtcaataggaagtattttatgtcagaaaagcaatt 230  Q
    ||||||||  |||||| |||||||||||||| || ||||||| ||||||||||    
T  18239506 ttttagtattttacttgtgtcaataggaagttttctatgtcaaaaaagcaatt 18239454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 231
Target Start/End: Original strand, 34815693 - 34815729
Alignment:
Q  195 tgtcaataggaagtattttatgtcagaaaagcaattt 231  Q
    |||||||||||| |||| |||||||||||||||||||    
T  34815693 tgtcaataggaaatattctatgtcagaaaagcaattt 34815729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 150 - 231
Target Start/End: Complemental strand, 16583273 - 16583192
Alignment:
Q  150 caacagtagttaactactaattgggactttttagtaaattacttatgtcaataggaagtattttatgtcagaaaagcaattt 231  Q
    |||| ||||||||||||   | ||| |||||||||||||||||| |||||||||||||||||  |||||| |||||||||||    
T  16583273 caacggtagttaactaccgctgggggctttttagtaaattacttgtgtcaataggaagtattccatgtcaaaaaagcaattt 16583192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 158 - 231
Target Start/End: Complemental strand, 26701904 - 26701831
Alignment:
Q  158 gttaactactaattgggactttttagtaaattacttatgtcaataggaagtattttatgtcagaaaagcaattt 231  Q
    ||||||||| | ||||  |||||||||||||||||| |||||||||||||| |  ||||||| |||||||||||    
T  26701904 gttaactaccacttggagctttttagtaaattacttgtgtcaataggaagtttcctatgtcaaaaaagcaattt 26701831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 156 - 224
Target Start/End: Original strand, 14737651 - 14737719
Alignment:
Q  156 tagttaactactaattgggactttttagtaaattacttatgtcaataggaagtattttatgtcagaaaa 224  Q
    ||||||||||| | | | | |||||| ||||||||||| ||||||||||||||||||||||||| ||||    
T  14737651 tagttaactaccactggaggcttttttgtaaattacttgtgtcaataggaagtattttatgtcaaaaaa 14737719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 188 - 231
Target Start/End: Complemental strand, 8036295 - 8036252
Alignment:
Q  188 ttacttatgtcaataggaagtattttatgtcagaaaagcaattt 231  Q
    |||||| ||||||||||||||||| |||||||||||||||||||    
T  8036295 ttacttgtgtcaataggaagtattctatgtcagaaaagcaattt 8036252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 188 - 231
Target Start/End: Complemental strand, 41363027 - 41362984
Alignment:
Q  188 ttacttatgtcaataggaagtattttatgtcagaaaagcaattt 231  Q
    |||||| |||||||||||||||||||||||||||||| ||||||    
T  41363027 ttacttgtgtcaataggaagtattttatgtcagaaaaacaattt 41362984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 176 - 231
Target Start/End: Original strand, 21511192 - 21511247
Alignment:
Q  176 ctttttagtaaattacttatgtcaataggaagtattttatgtcagaaaagcaattt 231  Q
    |||||||||||||||||| | |||||||||||||||  ||| || |||||||||||    
T  21511192 ctttttagtaaattacttgtatcaataggaagtattccatgacaaaaaagcaattt 21511247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 188 - 231
Target Start/End: Complemental strand, 27641575 - 27641532
Alignment:
Q  188 ttacttatgtcaataggaagtattttatgtcagaaaagcaattt 231  Q
    |||||| ||||||||| ||||||| |||||||||||||||||||    
T  27641575 ttacttgtgtcaatagaaagtattctatgtcagaaaagcaattt 27641532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 176 - 231
Target Start/End: Complemental strand, 38032203 - 38032148
Alignment:
Q  176 ctttttagtaaattacttatgtcaataggaagtattttatgtcagaaaagcaattt 231  Q
    |||||| ||||||||||| |||||||||||| |||| ||||||| ||| |||||||    
T  38032203 ctttttggtaaattacttgtgtcaataggaaatattctatgtcaaaaaggcaattt 38032148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 183 - 231
Target Start/End: Original strand, 32428798 - 32428846
Alignment:
Q  183 gtaaattacttatgtcaataggaagtattttatgtcagaaaagcaattt 231  Q
    |||||||||||||||||||||||||| || |||||||||||||||||||    
T  32428798 gtaaattacttatgtcaataggaagttttctatgtcagaaaagcaattt 32428846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 172 - 224
Target Start/End: Original strand, 50459629 - 50459681
Alignment:
Q  172 gggactttttagtaaattacttatgtcaataggaagtattttatgtcagaaaa 224  Q
    |||||| ||| ||||||||||| ||||||||||||||||| ||||||||||||    
T  50459629 gggactctttggtaaattacttgtgtcaataggaagtattctatgtcagaaaa 50459681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 188 - 231
Target Start/End: Complemental strand, 30191710 - 30191667
Alignment:
Q  188 ttacttatgtcaataggaagtattttatgtcagaaaagcaattt 231  Q
    |||||| ||||||||||||||||| |||||||||||||||||||    
T  30191710 ttacttgtgtcaataggaagtattctatgtcagaaaagcaattt 30191667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 176 - 231
Target Start/End: Original strand, 40469241 - 40469296
Alignment:
Q  176 ctttttagtaaattacttatgtcaataggaagtattttatgtcagaaaagcaattt 231  Q
    ||||||||||||||| || |||||||||||||||||  |||||| |||||||||||    
T  40469241 ctttttagtaaattatttgtgtcaataggaagtattcaatgtcaaaaaagcaattt 40469296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 188 - 231
Target Start/End: Complemental strand, 46412515 - 46412472
Alignment:
Q  188 ttacttatgtcaataggaagtattttatgtcagaaaagcaattt 231  Q
    |||||| ||||||||||||||||| |||||||||||||||||||    
T  46412515 ttacttgtgtcaataggaagtattctatgtcagaaaagcaattt 46412472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 188 - 231
Target Start/End: Original strand, 48098160 - 48098203
Alignment:
Q  188 ttacttatgtcaataggaagtattttatgtcagaaaagcaattt 231  Q
    |||||| ||||||||||||||||| |||||||||||||||||||    
T  48098160 ttacttgtgtcaataggaagtattctatgtcagaaaagcaattt 48098203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 60
Target Start/End: Original strand, 54671229 - 54671265
Alignment:
Q  24 tgggatgtgtctaaatcttattctccagcggtagtta 60  Q
    ||||||||||||||||||||||||||| |||||||||    
T  54671229 tgggatgtgtctaaatcttattctccaacggtagtta 54671265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 188 - 231
Target Start/End: Original strand, 10054306 - 10054349
Alignment:
Q  188 ttacttatgtcaataggaagtattttatgtcagaaaagcaattt 231  Q
    |||||| ||| ||||||||||||| |||||||||||||||||||    
T  10054306 ttacttgtgttaataggaagtattctatgtcagaaaagcaattt 10054349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 188 - 231
Target Start/End: Original strand, 11379780 - 11379823
Alignment:
Q  188 ttacttatgtcaataggaagtattttatgtcagaaaagcaattt 231  Q
    |||||| ||||||||| ||||||| |||||||||||||||||||    
T  11379780 ttacttgtgtcaatagaaagtattctatgtcagaaaagcaattt 11379823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 188 - 231
Target Start/End: Original strand, 14633427 - 14633470
Alignment:
Q  188 ttacttatgtcaataggaagtattttatgtcagaaaagcaattt 231  Q
    |||||| ||||||||||||||||| |||||||||||| ||||||    
T  14633427 ttacttgtgtcaataggaagtattctatgtcagaaaaacaattt 14633470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 188 - 231
Target Start/End: Complemental strand, 21196462 - 21196419
Alignment:
Q  188 ttacttatgtcaataggaagtattttatgtcagaaaagcaattt 231  Q
    |||||| |||||||||||| |||| |||||||||||||||||||    
T  21196462 ttacttgtgtcaataggaaatattctatgtcagaaaagcaattt 21196419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 188 - 231
Target Start/End: Original strand, 21196604 - 21196647
Alignment:
Q  188 ttacttatgtcaataggaagtattttatgtcagaaaagcaattt 231  Q
    |||||| ||||||||||||||||| ||||||| |||||||||||    
T  21196604 ttacttgtgtcaataggaagtattctatgtcaaaaaagcaattt 21196647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 188 - 231
Target Start/End: Original strand, 47642792 - 47642835
Alignment:
Q  188 ttacttatgtcaataggaagtattttatgtcagaaaagcaattt 231  Q
    |||||| ||| ||||||||||||| |||||||||||||||||||    
T  47642792 ttacttgtgttaataggaagtattctatgtcagaaaagcaattt 47642835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 188 - 231
Target Start/End: Original strand, 47760933 - 47760976
Alignment:
Q  188 ttacttatgtcaataggaagtattttatgtcagaaaagcaattt 231  Q
    |||||| | ||||||||||||||| |||||||||||||||||||    
T  47760933 ttacttgtatcaataggaagtattctatgtcagaaaagcaattt 47760976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 195 - 238
Target Start/End: Complemental strand, 50457467 - 50457424
Alignment:
Q  195 tgtcaataggaagtattttatgtcagaaaagcaatttgttagtc 238  Q
    ||||||||||||||||| ||||||| ||||||||||| ||||||    
T  50457467 tgtcaataggaagtattctatgtcaaaaaagcaattttttagtc 50457424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 231
Target Start/End: Original strand, 33942758 - 33942806
Alignment:
Q  183 gtaaattacttatgtcaataggaagtattttatgtcagaaaagcaattt 231  Q
    ||||||||||| |||||||||||||| |  ||||||| |||||||||||    
T  33942758 gtaaattacttgtgtcaataggaagtttcctatgtcacaaaagcaattt 33942806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 174 - 229
Target Start/End: Complemental strand, 10552755 - 10552700
Alignment:
Q  174 gactttttagtaaattacttatgtcaataggaagtattttatgtcagaaaagcaat 229  Q
    |||||||||||||||||||| |||||||||||||||||  |||||| |||||||||    
T  10552755 gactttttagtaaattacttgtgtcaataggaagtattccatgtcaaaaaagcaat 10552700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 176 - 231
Target Start/End: Original strand, 47868485 - 47868540
Alignment:
Q  176 ctttttagtaaattacttatgtcaataggaagtattttatgtcagaaaagcaattt 231  Q
    ||||||||||||||||||||||||||||||| | || ||||||| |||||||||||    
T  47868485 ctttttagtaaattacttatgtcaataggaacttttctatgtcaaaaaagcaattt 47868540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 188 - 231
Target Start/End: Original strand, 2206305 - 2206348
Alignment:
Q  188 ttacttatgtcaataggaagtattttatgtcagaaaagcaattt 231  Q
    |||||| ||||||||||||||||| |||||||||||||||||||    
T  2206305 ttacttgtgtcaataggaagtattctatgtcagaaaagcaattt 2206348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 184 - 231
Target Start/End: Complemental strand, 42734448 - 42734401
Alignment:
Q  184 taaattacttatgtcaataggaagtattttatgtcagaaaagcaattt 231  Q
    |||||||||| ||||||||||||||||| ||||| |||||| ||||||    
T  42734448 taaattacttgtgtcaataggaagtattctatgttagaaaaacaattt 42734401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 184 - 231
Target Start/End: Original strand, 42736958 - 42737005
Alignment:
Q  184 taaattacttatgtcaataggaagtattttatgtcagaaaagcaattt 231  Q
    |||||||||| ||||||||||||||||| ||||||| |||| ||||||    
T  42736958 taaattacttgtgtcaataggaagtattctatgtcaaaaaaacaattt 42737005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 155 - 231
Target Start/End: Original strand, 41964787 - 41964863
Alignment:
Q  155 gtagttaactactaattgggactttttagtaaattacttatgtcaataggaagtattttatgtcagaaaagcaattt 231  Q
    ||||||||||||   | ||||| ||| ||||| |||||||||||||| |||| | ||  ||||||||||||||||||    
T  41964787 gtagttaactaccgctggggacgtttaagtaatttacttatgtcaattggaacttttcaatgtcagaaaagcaattt 41964863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0769 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0769
Description:

Target: scaffold0769; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 177 - 231
Target Start/End: Original strand, 745 - 799
Alignment:
Q  177 tttttagtaaattacttatgtcaataggaagtattttatgtcagaaaagcaattt 231  Q
    ||||| ||||||||||| ||||||||||||||||| |||||||||||| ||||||    
T  745 tttttggtaaattacttgtgtcaataggaagtattctatgtcagaaaatcaattt 799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 176 - 231
Target Start/End: Original strand, 1973339 - 1973394
Alignment:
Q  176 ctttttagtaaattacttatgtcaataggaagtattttatgtcagaaaagcaattt 231  Q
    |||||| ||||||||||| |||||||| |||||||| ||||||| |||||||||||    
T  1973339 ctttttggtaaattacttgtgtcaatatgaagtattatatgtcaaaaaagcaattt 1973394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 188 - 231
Target Start/End: Complemental strand, 11356404 - 11356361
Alignment:
Q  188 ttacttatgtcaataggaagtattttatgtcagaaaagcaattt 231  Q
    |||||| ||||||||| |||||||||||||||||||||||||||    
T  11356404 ttacttgtgtcaatagaaagtattttatgtcagaaaagcaattt 11356361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 176 - 231
Target Start/End: Complemental strand, 26747751 - 26747696
Alignment:
Q  176 ctttttagtaaattacttatgtcaataggaagtattttatgtcagaaaagcaattt 231  Q
    |||||||||||||||||| |||||||||||||| |  ||||||| |||||||||||    
T  26747751 ctttttagtaaattacttgtgtcaataggaagtttcctatgtcaaaaaagcaattt 26747696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 158 - 208
Target Start/End: Complemental strand, 6550058 - 6550008
Alignment:
Q  158 gttaactactaattgggactttttagtaaattacttatgtcaataggaagt 208  Q
    ||||||||||  | || ||||||||||||||||||||||||||||||||||    
T  6550058 gttaactactgttgggaactttttagtaaattacttatgtcaataggaagt 6550008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 188 - 236
Target Start/End: Original strand, 16931285 - 16931333
Alignment:
Q  188 ttacttatgtcaataggaagtattttatgtcagaaaagcaatttgttag 236  Q
    ||||||||||||||||||| |||| ||||||| ||||||||||| ||||    
T  16931285 ttacttatgtcaataggaaatattctatgtcaaaaaagcaattttttag 16931333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 188 - 231
Target Start/End: Complemental strand, 4722377 - 4722334
Alignment:
Q  188 ttacttatgtcaataggaagtattttatgtcagaaaagcaattt 231  Q
    |||||| ||||||||||||||||| |||||||||||| ||||||    
T  4722377 ttacttgtgtcaataggaagtattctatgtcagaaaaacaattt 4722334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 188 - 231
Target Start/End: Original strand, 17646640 - 17646683
Alignment:
Q  188 ttacttatgtcaataggaagtattttatgtcagaaaagcaattt 231  Q
    |||||| |||||| |||||||||| |||||||||||||||||||    
T  17646640 ttacttgtgtcaacaggaagtattctatgtcagaaaagcaattt 17646683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 188 - 231
Target Start/End: Complemental strand, 22964712 - 22964669
Alignment:
Q  188 ttacttatgtcaataggaagtattttatgtcagaaaagcaattt 231  Q
    ||||||||||||||||||||||||  |||||| |||||||||||    
T  22964712 ttacttatgtcaataggaagtattcaatgtcaaaaaagcaattt 22964669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 150 - 203
Target Start/End: Complemental strand, 7250113 - 7250060
Alignment:
Q  150 caacagtagttaactactaattgggactttttagtaaattacttatgtcaatag 203  Q
    |||||||||||||||||   | | ||||||||||||||||| ||||||||||||    
T  7250113 caacagtagttaactaccgctggagactttttagtaaattatttatgtcaatag 7250060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 150 - 211
Target Start/End: Complemental strand, 23062262 - 23062201
Alignment:
Q  150 caacagtagttaactactaattgggactttttagtaaattacttatgtcaataggaagtatt 211  Q
    |||| ||||||||||||   ||| |||||||| |||||||| || |||||||||||||||||    
T  23062262 caacggtagttaactaccgcttgagactttttggtaaattatttgtgtcaataggaagtatt 23062201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 231
Target Start/End: Complemental strand, 41088120 - 41088084
Alignment:
Q  195 tgtcaataggaagtattttatgtcagaaaagcaattt 231  Q
    ||||||||||||||||| ||||||||||||| |||||    
T  41088120 tgtcaataggaagtattctatgtcagaaaagtaattt 41088084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 231
Target Start/End: Original strand, 43297795 - 43297843
Alignment:
Q  183 gtaaattacttatgtcaataggaagtattttatgtcagaaaagcaattt 231  Q
    ||||||||||| |||||||||||||| |   ||||||||||||||||||    
T  43297795 gtaaattacttgtgtcaataggaagtttcccatgtcagaaaagcaattt 43297843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 176 - 229
Target Start/End: Complemental strand, 19026 - 18973
Alignment:
Q  176 ctttttagtaaattacttatgtcaataggaagtattttatgtcagaaaagcaat 229  Q
    |||||| ||||||||||| ||||||||||||||||| |||| || |||||||||    
T  19026 ctttttggtaaattacttgtgtcaataggaagtattctatgccaaaaaagcaat 18973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 183 - 231
Target Start/End: Original strand, 22868432 - 22868480
Alignment:
Q  183 gtaaattacttatgtcaataggaagtattttatgtcagaaaagcaattt 231  Q
    ||||||||||| |||||||||||||| || ||||||| |||||||||||    
T  22868432 gtaaattacttgtgtcaataggaagttttctatgtcaaaaaagcaattt 22868480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 188 - 231
Target Start/End: Original strand, 12398776 - 12398819
Alignment:
Q  188 ttacttatgtcaataggaagtattttatgtcagaaaagcaattt 231  Q
    |||||| ||||||||||||||||| |||| ||||||||||||||    
T  12398776 ttacttgtgtcaataggaagtattctatgacagaaaagcaattt 12398819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 188 - 231
Target Start/End: Original strand, 130567 - 130610
Alignment:
Q  188 ttacttatgtcaataggaagtattttatgtcagaaaagcaattt 231  Q
    |||||| ||||||||||||||||| ||||||| |||||||||||    
T  130567 ttacttgtgtcaataggaagtattctatgtcaaaaaagcaattt 130610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University