View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21251_high_1 (Length: 641)
Name: NF21251_high_1
Description: NF21251
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21251_high_1 |
 | |
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| [»] scaffold0229 (1 HSPs) |
| | |
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Alignment Details
Target: chr8 (Bit Score: 598; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 598; E-Value: 0
Query Start/End: Original strand, 10 - 623
Target Start/End: Complemental strand, 42523226 - 42522613
Alignment:
| Q |
10 |
acatcatcatcatcgtaggcatgttttcatcagcaaaatctctgagtttgttgagctcaggcaaaataactttgccaagatcaggtctgtcttttcttct |
109 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42523226 |
acatcatcatcatcataggcatgttttcatcagcaaaatctctgagtttgttgagctcaggcaaaataactttgccaagatcaggtctgtcttttcttct |
42523127 |
T |
|
| Q |
110 |
catttctgcacactgaatagcaagcttggcaaaatgcatagcctgttcaattggccaatcctcaacggcaggatcaagcatctcatcaaaagtacctttc |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42523126 |
catttctgcacactgaatagcaagcttggcaaaatgcatagcctgttcaattggccaatcctcaacggcaggatcaagcatctcatcaaaagtacctttc |
42523027 |
T |
|
| Q |
210 |
tcaatagatcttgcaacatggtgactcaaacccattggtggcttcgctgttatcatttgtagaagcatgatcccaagtgagtaaatatcagacttggttc |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42523026 |
tcaatagatcttgcaacatggtgactcaaacccattggtggcttcgctgttatcatttgtagaagcatgatcccaagtgagtaaatatcagacttggttc |
42522927 |
T |
|
| Q |
310 |
caagcatccccgtctgttggtactccggatcaatgtaacagaaagttccagcggttgctgtcatgcgatactgtgtcacggtgtctgcaactgagggagg |
409 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42522926 |
caagcatccccgtctgttggtactccggatcaatgtaacagaaagttccagcggttgctgtcatgcgatactgtgtcacggtgtctgcaactgagggagg |
42522827 |
T |
|
| Q |
410 |
gacaagccttgccagccctacatcactgattttgctcacatagttccggtcgagcaaaatgtttccaggttttaagtcacggtgcaccaatggttcaggt |
509 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
42522826 |
gacaagccttgccagccctacatcgctgattttgctcacatagttccggtcgagcaaaatgtttccaggtttcaagtcacggtgcaccaatggttcaggt |
42522727 |
T |
|
| Q |
510 |
tttgtctggtgaaggaaaaggagaccgattgcaatctccgcagcaattcgaaatcttagctgccatggtagaactggtaatttactattatttctcctga |
609 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42522726 |
tttgtctggtgaaggaaaaggagaccggttgcaatctccgcagcaattcgaaatcttagctgccatggtagaactggtaatttactattatttctcctga |
42522627 |
T |
|
| Q |
610 |
ataggcaatcatcc |
623 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
42522626 |
ataggcaatcatcc |
42522613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 590; E-Value: 0
Query Start/End: Original strand, 10 - 623
Target Start/End: Complemental strand, 42531434 - 42530821
Alignment:
| Q |
10 |
acatcatcatcatcgtaggcatgttttcatcagcaaaatctctgagtttgttgagctcaggcaaaataactttgccaagatcaggtctgtcttttcttct |
109 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42531434 |
acatcatcatcatcataggcatgttttcatcagcaaaatctctgagtttgttgagctcaggcaaaataactttgccaagatcaggtctgtcttttcttct |
42531335 |
T |
|
| Q |
110 |
catttctgcacactgaatagcaagcttggcaaaatgcatagcctgttcaattggccaatcctcaacggcaggatcaagcatctcatcaaaagtacctttc |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42531334 |
catttctgcacactgaatagcaagcttggcaaaatgcatagcctgttcaattggccaatcctcaacggcaggatcaagcatctcatcaaaagtacctttc |
42531235 |
T |
|
| Q |
210 |
tcaatagatcttgcaacatggtgactcaaacccattggtggcttcgctgttatcatttgtagaagcatgatcccaagtgagtaaatatcagacttggttc |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42531234 |
tcaatagatcttgcaacatggtgactcaaacccattggtggcctcgctgttatcatttgtagaagcatgatcccaagtgagtaaatatcagacttggttc |
42531135 |
T |
|
| Q |
310 |
caagcatccccgtctgttggtactccggatcaatgtaacagaaagttccagcggttgctgtcatgcgatactgtgtcacggtgtctgcaactgagggagg |
409 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42531134 |
caagcatccccgtctgttggtactccggatcaatgtagcagaaagttccagcggttgctgtcatgcgatactgtgtcacggtgtctgcaactgagggagg |
42531035 |
T |
|
| Q |
410 |
gacaagccttgccagccctacatcactgattttgctcacatagttccggtcgagcaaaatgtttccaggttttaagtcacggtgcaccaatggttcaggt |
509 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
42531034 |
gacaagccttgccagccctacatcgctgattttgctcacatagttccggtcgagcaaaatgtttccaggtttcaagtcacggtgcaccaatggttcaggt |
42530935 |
T |
|
| Q |
510 |
tttgtctggtgaaggaaaaggagaccgattgcaatctccgcagcaattcgaaatcttagctgccatggtagaactggtaatttactattatttctcctga |
609 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42530934 |
tttgtctggtgaaggaaaaggagaccggttgcaatctccgcagcaattcgaaatcttagctgccatggtagaactggtaatttactattatttctcctga |
42530835 |
T |
|
| Q |
610 |
ataggcaatcatcc |
623 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
42530834 |
ataggcaatcatcc |
42530821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 161; Significance: 2e-85; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 161; E-Value: 2e-85
Query Start/End: Original strand, 17 - 529
Target Start/End: Original strand, 35082684 - 35083196
Alignment:
| Q |
17 |
catcatcgtaggcatgttttcatcagcaaaatctctgagtttgttgagctcaggcaaaataactttgccaagatcaggtctgtcttttcttctcatttct |
116 |
Q |
| |
|
||||||| ||||||||||||| || || || ||||||||||||||||||||| | | || ||| |||||||||||||| |||||||| |||||||| |
|
|
| T |
35082684 |
catcatcataggcatgttttcttcggcgaatattctgagtttgttgagctcaggaagcacaatttttccaagatcaggtctatcttttctcctcatttca |
35082783 |
T |
|
| Q |
117 |
gcacactgaatagcaagcttggcaaaatgcatagcctgttcaattggccaatcctcaacggcaggatcaagcatctcatcaaaagtacctttctcaatag |
216 |
Q |
| |
|
|||||||||| ||| ||||| ||||||| | ||||| || ||||| || | ||| |||||||||||||| ||| |||||| || || ||||||| |
|
|
| T |
35082784 |
gcacactgaaggcaaagtttggcgaaatgcaaggtgtgttccataggccagtcttgaacagcaggatcaagcatgtcaagaaaagttcccttttcaatag |
35082883 |
T |
|
| Q |
217 |
atcttgcaacatggtgactcaaacccattggtggcttcgctgttatcatttgtagaagcatgatcccaagtgagtaaatatcagacttggttccaagcat |
316 |
Q |
| |
|
|||| ||||||| ||| ||||||||||||| || || || || |||| ||||| ||||||||| |||||||||||||||||||| ||| | |||||||| |
|
|
| T |
35082884 |
atctaccaacatgatgagtcaaacccattggaggtttggcggtaatcacttgtaaaagcatgattccaagtgagtaaatatcagatttgataccaagcat |
35082983 |
T |
|
| Q |
317 |
ccccgtctgttggtactccggatcaatgtaacagaaagttccagcggttgctgtcatgcgatactgtgtcacggtgtctgcaactgagggagggacaagc |
416 |
Q |
| |
|
|| || || ||||| || || ||||| ||||||||||||||||| || | |||||||||||||| || || |||||| ||| || ||||| |||||| |
|
|
| T |
35082984 |
gccggtttgctggtattcagggtcaatataacagaaagttccagcagtcgaagtcatgcgatactgagtgacagtgtcttgaacagaaggaggaacaagc |
35083083 |
T |
|
| Q |
417 |
cttgccagccctacatcactgattttgctcacatagttccggtcgagcaaaatgtttccaggttttaagtcacggtgcaccaatggttcaggttttgtct |
516 |
Q |
| |
|
||||| | || ||||||| || |||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||| | ||||| ||||| |||| |
|
|
| T |
35083084 |
cttgctaaaccaacatcaccaatcttgctcacatagtttcggtcaagcaaaatgtttccaggttttaagtcacgatgcacaatcggttctggtttagtct |
35083183 |
T |
|
| Q |
517 |
ggtgaaggaaaag |
529 |
Q |
| |
|
||||||||||||| |
|
|
| T |
35083184 |
ggtgaaggaaaag |
35083196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0229 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0229
Description:
Target: scaffold0229; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 281 - 436
Target Start/End: Complemental strand, 209 - 54
Alignment:
| Q |
281 |
cccaagtgagtaaatatcagacttggttccaagcatccccgtctgttggtactccggatcaatgtaacagaaagttccagcggttgctgtcatgcgatac |
380 |
Q |
| |
|
||||||||||||||||||||| || ||| | ||| || |||||||||||||| ||||| ||||||||||| ||||| || | | |||||| ||||| |
|
|
| T |
209 |
cccaagtgagtaaatatcagatttcactcccaacattcctgtctgttggtactcaggatctatgtaacagaatgttccggcagccgatgtcattcgatat |
110 |
T |
|
| Q |
381 |
tgtgtcacggtgtctgcaactgagggagggacaagccttgccagccctacatcact |
436 |
Q |
| |
|
|||||||| ||||||| ||||| || || || || ||||||| || |||||||| |
|
|
| T |
109 |
tgtgtcacattgtctgctactgatggcggtactagtcttgccaaaccaacatcact |
54 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 407 - 574
Target Start/End: Complemental strand, 45728252 - 45728085
Alignment:
| Q |
407 |
agggacaagccttgccagccctacatcactgattttgctcacatagttccggtcgagcaaaatgtttccaggttttaagtcacggtgcaccaatggttca |
506 |
Q |
| |
|
|||||| |||||||||| || |||||||| || || | ||||| |||| ||| |||||||||||||| ||||| || ||||| |||||||| |||||| |
|
|
| T |
45728252 |
agggaccagccttgccaaaccaacatcacttatcttacatacataattcctgtccagcaaaatgtttccgggtttcaaatcacgatgcaccaaaggttca |
45728153 |
T |
|
| Q |
507 |
ggttttgtctggtgaaggaaaaggagaccgattgcaatctccgcagcaattcgaaatcttagctgcca |
574 |
Q |
| |
|
|| || ||||| || ||||| || | ||| |||| ||||| |||||||| || || || |||||||| |
|
|
| T |
45728152 |
ggcttcgtctgatgtaggaatagcaaacctgttgctatctctgcagcaatccggaacctaagctgcca |
45728085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 281 - 436
Target Start/End: Complemental strand, 1274201 - 1274046
Alignment:
| Q |
281 |
cccaagtgagtaaatatcagacttggttccaagcatccccgtctgttggtactccggatcaatgtaacagaaagttccagcggttgctgtcatgcgatac |
380 |
Q |
| |
|
||||||||||||||||||||| || ||| | ||| || |||||||||||||| ||||| ||||||||||| ||||| || | | |||||| ||||| |
|
|
| T |
1274201 |
cccaagtgagtaaatatcagatttcactcccaacattcctgtctgttggtactcaggatctatgtaacagaatgttccggcagccgatgtcattcgatat |
1274102 |
T |
|
| Q |
381 |
tgtgtcacggtgtctgcaactgagggagggacaagccttgccagccctacatcact |
436 |
Q |
| |
|
|||||||| ||||||| ||||| || || || || ||||||| || |||||||| |
|
|
| T |
1274101 |
tgtgtcacattgtctgctactgatggcggtactagtcttgccaaaccaacatcact |
1274046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 330 - 526
Target Start/End: Original strand, 50439354 - 50439550
Alignment:
| Q |
330 |
tactccggatcaatgtaacagaaagttccagcggttgctgtcatgcgatactgtgtcacggtgtctgcaactgagggagggacaagccttgccagcccta |
429 |
Q |
| |
|
||||| ||||| || |||||||| ||||| || ||||| ||||||||||| || ||||| |||| || || || || || ||||| ||||||| || | |
|
|
| T |
50439354 |
tactcaggatctatataacagaatgttcctgctgttgccgtcatgcgatattgcgtcacactgtcggccacagatggcggaacaagtcttgccaaaccaa |
50439453 |
T |
|
| Q |
430 |
catcactgattttgctcacatagttccggtcgagcaaaatgtttccaggttttaagtcacggtgcaccaatggttcaggttttgtctggtgaaggaa |
526 |
Q |
| |
|
||||||| |||||| |||||||| | ||| ||||| |||||||| ||||| ||||| | || || | ||||| |||||||| ||||||||||| |
|
|
| T |
50439454 |
catcactaattttggctacatagtttctgtctagcaagatgtttcctggtttcaagtctctatgtactataggttctggttttgtttggtgaaggaa |
50439550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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