View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21251_high_3 (Length: 371)

Name: NF21251_high_3
Description: NF21251
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21251_high_3
NF21251_high_3
[»] chr4 (3 HSPs)
chr4 (13-353)||(44145002-44145342)
chr4 (19-325)||(44158099-44158411)
chr4 (320-348)||(40893411-40893439)


Alignment Details
Target: chr4 (Bit Score: 317; Significance: 1e-179; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 13 - 353
Target Start/End: Complemental strand, 44145342 - 44145002
Alignment:
Q  13 cattactctacctgtacagaggctgaaaattaatgttggtgttggttgttttgaatgttgtactggttatggctttctagtgcgcagttatgcaggttct 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44145342 cattactctacctgtacagaggctgaaaattaatgttggtgttggttgttttgaatgttgtactggttatggctttctagtgcgcagttatgcaggttct 44145243  T
Q  113 gtggccttcgcagctacaaggaaggaagagattacactatctcctctgatggctgaatctctggccttgatatggtgtttgcaatgggttcagatgcaag 212  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| || ||||||||||||||||||||| ||||| |||||||||    
T  44145242 gtggccttcgcagctacaaggaaggaagatattacactatctcctctgatggttgaatccctagccttgatatggtgtttgcaacgggtttagatgcaag 44145143  T
Q  213 atttccacaatttgatcattgactcagacgcagaaactttaacacacggcttgggtagccaggtgaaagcatgctgacattgaccatataattctggact 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44145142 atttccacaatttgatcattgactcagacgcagaaactttaacacacggcttgggtagccaggtgaaagcatgctgacattgaccatataattctggact 44145043  T
Q  313 gtaaagaaatactgcagcacatgaattctaggactttggtt 353  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  44145042 gtaaagaaatactgcagcacatgaattctaggactttggtt 44145002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 19 - 325
Target Start/End: Original strand, 44158099 - 44158411
Alignment:
Q  19 tctacctgtacagaggctgaaaattaatgttggtgttggttgttttgaatgttgtactggttatggctttctagtgcgcagttatgcaggttctgtggcc 118  Q
    |||||||||||| |||||||||| ||||| || || || ||||||||||| ||||||||||||||| ||| | |||||||  | || |||| ||||| ||    
T  44158099 tctacctgtacataggctgaaaactaatgctgatgctgattgttttgaatattgtactggttatggttttgt-gtgcgcaactttgtaggtcctgtgacc 44158197  T
Q  119 -ttcgcagctacaaggaaggaa--ga---gattacactatctcctctgatggctgaatctctggccttgatatggtgtttgcaatgggttcagatgcaag 212  Q
     || || |||||||||||||||  ||   |||  || |||||||| ||||||||||| | |||||||||| | |||||||||||   ||||||   |||     
T  44158198 ttttgcggctacaaggaaggaaacgaaacgatcgcaatatctcctttgatggctgaagcactggccttgacacggtgtttgcaacatgttcagcaacaaa 44158297  T
Q  213 atttccacaatttgatcattgactcagacgcagaaactttaacacacggcttgggtagccaggtgaaagcatgctgacattgaccatata--attctgga 310  Q
    | || |||||||||||||||||  | || |  |||| | ||| |||| |||| ||| | || ||| ||||||||||||||||| ||| ||  ||||||||    
T  44158298 aatttcacaatttgatcattgagacggatgttgaaattgtaaaacactgctttggtggacaagtg-aagcatgctgacattgatcatttaatattctgga 44158396  T
Q  311 ctgtaaagaaatact 325  Q
    || ||| ||||||||    
T  44158397 ctttaaggaaatact 44158411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 320 - 348
Target Start/End: Complemental strand, 40893439 - 40893411
Alignment:
Q  320 aatactgcagcacatgaattctaggactt 348  Q
    |||||||||||||||||||||||||||||    
T  40893439 aatactgcagcacatgaattctaggactt 40893411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University