View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21251_low_2 (Length: 422)
Name: NF21251_low_2
Description: NF21251
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21251_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 360; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 22 - 413
Target Start/End: Complemental strand, 40903300 - 40902909
Alignment:
| Q |
22 |
gcagtatcctgctatatcttcacagctttacattcctttattttattattgcattaaaatgcactgaccttgatgattcaatctaccacctccaaaacat |
121 |
Q |
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| T |
40903300 |
gcagtatcctgctatatcttcacagctttacattcctttattttattattgcattaaaatgcactgaccttgatgattcaatctaccacctccaaaacat |
40903201 |
T |
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| Q |
122 |
tggcaactttcacgttaaaaagaatgttgttcttttccaaccaaatacaccaagccattgttagccaaactaagtgggacactttcttgcctttcttccc |
221 |
Q |
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| T |
40903200 |
tggcaactttcacgttaaaaagaatgctgttcttttccaaccaaacacaccaagccattgttagccaaactaagtgggacactttcttgcctttcttccc |
40903101 |
T |
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| Q |
222 |
tttgcaaaaagcaaaacacacaacattttttatgcacatcgcgaataacccctctactccataattctacccggattggtagcctatcttgaagtaatct |
321 |
Q |
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| T |
40903100 |
tttgcaaaaagcaaaacacacaacattgttgatgcacatcgcgaataacccctctactccataattctacccgggttgttagcctatcttgaagtaatct |
40903001 |
T |
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| Q |
322 |
ccaaccaaacatacagatttttgacggcaccaacgtttcccactagcgatgtgcagctgccataaaatcatcgccctattctgcagaattat |
413 |
Q |
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| T |
40903000 |
ccaaccaaacatacagatttttgacggcaccaacgtttcccactagcgatgtgcagctgccataaaatcatcgccgtattctgccgaattat |
40902909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 229 - 413
Target Start/End: Complemental strand, 30149954 - 30149769
Alignment:
| Q |
229 |
aaagcaaaacacacaacattttttatgcacatcgcgaataacccctctactccataattctacccggattggtagcctatcttgaagtaatctccaacca |
328 |
Q |
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| T |
30149954 |
aaagcaaaacacacaacattgttgatgcacgctgcgaataacccctctcctccataattctacccgggttggtagcctatcttgaagtaatctccatcca |
30149855 |
T |
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| Q |
329 |
aacatacagatttttgacggcaccaacgtttcccactagcgatgtgcagctgccataaa-atcatcgccctattctgcagaattat |
413 |
Q |
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|||||||| ||||||||||||||| ||||||||||||||||||| ||||| ||||||| | ||||||| |||||||||||||||| |
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| T |
30149854 |
aacatacaaatttttgacggcaccgacgtttcccactagcgatgcacagctaccataaataccatcgccgtattctgcagaattat |
30149769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 111 - 229
Target Start/End: Complemental strand, 30150222 - 30150097
Alignment:
| Q |
111 |
ctccaaaacattggcaactttcacgttaaaaagaatgttgttcttttccaaccaaatacaccaagc-------cattgttagccaaactaagtgggacac |
203 |
Q |
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| T |
30150222 |
ctccaaaacattgacaagtttcacgttaaaaagaatgtcgttccattccaaccaaatacaccaaacggttattacttgttagccaaactaagtgggacac |
30150123 |
T |
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| Q |
204 |
tttcttgcctttcttccctttgcaaa |
229 |
Q |
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| T |
30150122 |
tttcttgccattcccccctttgcaaa |
30150097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 136 - 203
Target Start/End: Complemental strand, 8590141 - 8590074
Alignment:
| Q |
136 |
ttaaaaagaatgttgttcttttccaaccaaatacaccaagccattgttagccaaactaagtgggacac |
203 |
Q |
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||||||| |||||| || | ||||||||||||||||||||| |||||||| |||| ||| || ||||| |
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| T |
8590141 |
ttaaaaataatgttattatcttccaaccaaatacaccaagctattgttaggcaaattaaatgtgacac |
8590074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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