View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21251_low_4 (Length: 346)
Name: NF21251_low_4
Description: NF21251
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21251_low_4 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 39 - 339
Target Start/End: Original strand, 33654325 - 33654621
Alignment:
| Q |
39 |
acttttcacctcatcatcatcaattctccaatttttgttcttgcacaccacaaccttctcaagcttgcgtaatttattcaccatatctcggcgtttctta |
138 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33654325 |
acttttcacctcatcatcatcaattctccaatttttgttcttgcacaccacaactttctcaagcttgcgtaatttattcaccatatctcggcgtttctta |
33654424 |
T |
|
| Q |
139 |
gttgacatgggaataatgaaaatcatgtttgtgtgtgtgatgattgttcactaacctatagtttatatatatagtagaatagtgcatgaacattgattnn |
238 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
33654425 |
gttgacatgggaataatgaaaatcatgtttgtgtgtgtgatgattgttcactaacctatagtt----tatatagtagaatagtgcatgaacattgataaa |
33654520 |
T |
|
| Q |
239 |
nnnnntaagatgcacctcccccttttcagtttaattttccaaatatttttaatacgggaatttaataaattttgnnnnnnntaatcttgtaatattcttc |
338 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
33654521 |
aaaaataagatgcacctcccccttttcagtttaattttccaaatatttttaataggggaatttaataaattttgaaaaaaataatcttgtaatattcttc |
33654620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University