View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21251_low_5 (Length: 303)
Name: NF21251_low_5
Description: NF21251
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21251_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 265; Significance: 1e-148; HSPs: 11)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 17 - 293
Target Start/End: Complemental strand, 9236667 - 9236391
Alignment:
| Q |
17 |
aattttggttgctgtgaaggttctcaatgaaacacaaggagatggaaacgatttcatcaacgaagtcggaactatgggaaaaattcatcatgtcaatgtt |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9236667 |
aattttggttgctgtgaaggttctcaatgaaacacaaggagatggaaacgatttcatcaacgaagtcggaactatgggaaaaattcatcatgtcaatgtt |
9236568 |
T |
|
| Q |
117 |
gttcgcttactcggattttgtgctgatggattccaccgtgctcttgtctatgatttctttccgaatggctccttgcagaacttcttagcgccaccagaga |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
9236567 |
gttcgcttactcggattttgtgctgatggattccaccgtgctcttgtctatgatttctttccgaatggctccttgcagaacttcttagcaccaccagaga |
9236468 |
T |
|
| Q |
217 |
acaaggaagtttttctcggttgggaaaagttgcaacaaattgctcttggtgttgcaagagggattgagtatcttcat |
293 |
Q |
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| T |
9236467 |
acaaggaagtttttctcggtagggaaaagttgcaacgaattgctcttggtgttgcaagagggattgagtatcttcat |
9236391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 17 - 293
Target Start/End: Original strand, 9377566 - 9377842
Alignment:
| Q |
17 |
aattttggttgctgtgaaggttctcaatgaaacacaaggagatggaaacgatttcatcaacgaagtcggaactatgggaaaaattcatcatgtcaatgtt |
116 |
Q |
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||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| |||||||| |
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| T |
9377566 |
aattttggttgctgtgaaggtgctcaatgagacacaaggagatggaaacgatttcatcaatgaagtccgaactatgggaaaaattcatcatttcaatgtt |
9377665 |
T |
|
| Q |
117 |
gttcgcttactcggattttgtgctgatggattccaccgtgctcttgtctatgatttctttccgaatggctccttgcagaacttcttagcgccaccagaga |
216 |
Q |
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| T |
9377666 |
gttcgcttgctcggattctgtgctgatggattccaccgtgctcttgtctatgatttctttccaaatgggtcgttgcaaaaattcttggcgccaccggaga |
9377765 |
T |
|
| Q |
217 |
acaaggaagtttttctcggttgggaaaagttgcaacaaattgctcttggtgttgcaagagggattgagtatcttcat |
293 |
Q |
| |
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|||| || |||||||| ||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| |
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| T |
9377766 |
acaatgatgtttttcttggttgggaaaagttgcaacgcattgctcttggtgttgctagagggattgagtatcttcat |
9377842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 57 - 292
Target Start/End: Complemental strand, 9420905 - 9420670
Alignment:
| Q |
57 |
gatggaaacgatttcatcaacgaagtcggaactatgggaaaaattcatcatgtcaatgttgttcgcttactcggattttgtgctgatggattccaccgtg |
156 |
Q |
| |
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| T |
9420905 |
gatggaaaagagttcattaacgaagtgaaagctatgggaaaaattcatcacatcaatgttgttcgcttggttggattttgcgccgatggatcctaccgtg |
9420806 |
T |
|
| Q |
157 |
ctcttgtctatgatttctttccgaatggctccttgcagaacttcttagcgccaccagagaacaaggaagtttttctcggttgggaaaagttgcaacaaat |
256 |
Q |
| |
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||||||| ||| |||||||||| ||||| || || ||||||||| || | | ||| || | | ||| ||||||||| ||||| ||| | |||||||| |
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| T |
9420805 |
ctcttgtttataatttctttccaaatggttcgttacagaacttcataacccgacctgatgatatggaccattttctcggatgggagaagctacaacaaat |
9420706 |
T |
|
| Q |
257 |
tgctcttggtgttgcaagagggattgagtatcttca |
292 |
Q |
| |
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||||||||| | || | ||| |||||||||||||| |
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| T |
9420705 |
tgctcttggcatagccaaaggtattgagtatcttca |
9420670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 57 - 292
Target Start/End: Complemental strand, 9437988 - 9437753
Alignment:
| Q |
57 |
gatggaaacgatttcatcaacgaagtcggaactatgggaaaaattcatcatgtcaatgttgttcgcttactcggattttgtgctgatggattccaccgtg |
156 |
Q |
| |
|
|||||||| || ||||| |||||||| | ||||||||||||||||||| |||||||||||||||| | |||||||| || ||||||| | |||||| |
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| T |
9437988 |
gatggaaaagagttcattaacgaagtgaaagctatgggaaaaattcatcacatcaatgttgttcgcttggttggattttgcgccgatggatcctaccgtg |
9437889 |
T |
|
| Q |
157 |
ctcttgtctatgatttctttccgaatggctccttgcagaacttcttagcgccaccagagaacaaggaagtttttctcggttgggaaaagttgcaacaaat |
256 |
Q |
| |
|
||||||| ||| |||||||||| ||||| || || ||||||||| || | | ||| || | | ||| ||||||||| ||||| ||| | |||||||| |
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|
| T |
9437888 |
ctcttgtttataatttctttccaaatggttcgttacagaacttcataacccgacctgatgatatggaccattttctcggatgggagaagctacaacaaat |
9437789 |
T |
|
| Q |
257 |
tgctcttggtgttgcaagagggattgagtatcttca |
292 |
Q |
| |
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||||||||| | || | ||| |||||||||||||| |
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|
| T |
9437788 |
tgctcttggcatagccaaaggtattgagtatcttca |
9437753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 84 - 292
Target Start/End: Original strand, 8926866 - 8927074
Alignment:
| Q |
84 |
ggaactatgggaaaaattcatcatgtcaatgttgttcgcttactcggattttgtgctgatggattccaccgtgctcttgtctatgatttctttccgaatg |
183 |
Q |
| |
|
||||||||||||||||| |||||||| ||||||||||| || || || |||||||| |||||||| | |||||||| || ||||| || || ||||||| |
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|
| T |
8926866 |
ggaactatgggaaaaatccatcatgttaatgttgttcggttgcttggcttttgtgccgatggattttatcgtgctctggtttatgactttttcccgaatg |
8926965 |
T |
|
| Q |
184 |
gctccttgcagaacttcttagcgccaccagagaacaaggaagtttttctcggttgggaaaagttgcaacaaattgctcttggtgttgcaagagggattga |
283 |
Q |
| |
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| || ||||| |||||| | | |||| || |||||||| ||||| || |||||||| ||||||||||||||||| || |||| | |||||||| |
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| T |
8926966 |
gttcgttgcaaaacttcatttcttcacccgacaacaaggatgttttccttggttgggacttattgcaacaaattgctctaggcattgccaatgggattga |
8927065 |
T |
|
| Q |
284 |
gtatcttca |
292 |
Q |
| |
|
||||||||| |
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|
| T |
8927066 |
gtatcttca |
8927074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 69 - 292
Target Start/End: Original strand, 8939277 - 8939500
Alignment:
| Q |
69 |
ttcatcaacgaagtcggaactatgggaaaaattcatcatgtcaatgttgttcgcttactcggattttgtgctgatggattccaccgtgctcttgtctatg |
168 |
Q |
| |
|
||||| || ||||| |||||||||||||||||||||||||| |||||||| || || || || |||||||| |||||||| | |||||| | || |||| |
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|
| T |
8939277 |
ttcataaatgaagtgggaactatgggaaaaattcatcatgttaatgttgtccggttgcttggcttttgtgccgatggattttatcgtgctttggtttatg |
8939376 |
T |
|
| Q |
169 |
atttctttccgaatggctccttgcagaacttcttagcgccaccagagaacaaggaagtttttctcggttgggaaaagttgcaacaaattgctcttggtgt |
268 |
Q |
| |
|
| || || || ||||| || ||||| || ||| | | |||| || |||||||| ||||| || |||||||| |||||||||||||||||||| | |
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|
| T |
8939377 |
actttttcccaaatggttcattgcaaaatttcatttcttcacctgacaacaaggatgttttccttggttgggacttattgcaacaaattgctcttggcat |
8939476 |
T |
|
| Q |
269 |
tgcaagagggattgagtatcttca |
292 |
Q |
| |
|
||| | ||||||||||||||||| |
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|
| T |
8939477 |
tgccaatgggattgagtatcttca |
8939500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 52 - 196
Target Start/End: Complemental strand, 9257733 - 9257589
Alignment:
| Q |
52 |
aaggagatggaaacgatttcatcaacgaagtcggaactatgggaaaaattcatcatgtcaatgttgttcgcttactcggattttgtgctgatggattcca |
151 |
Q |
| |
|
|||||||||| || || ||||| || ||||| ||||||||||| ||||| || ||| |||||| ||| ||||| || || |||||||| |||||||| || |
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|
| T |
9257733 |
aaggagatgggaaggagttcataaatgaagtgggaactatgggtaaaatccaccatctcaatgctgtccgcttgcttggcttttgtgccgatggatttca |
9257634 |
T |
|
| Q |
152 |
ccgtgctcttgtctatgatttctttccgaatggctccttgcagaa |
196 |
Q |
| |
|
|||||||| |||||||| ||||| || ||||| || |||||||| |
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| T |
9257633 |
tcgtgctctagtctatgacttcttcccaaatggttcgttgcagaa |
9257589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 24 - 148
Target Start/End: Original strand, 8962159 - 8962283
Alignment:
| Q |
24 |
gttgctgtgaaggttctcaatgaaacacaaggagatggaaacgatttcatcaacgaagtcggaactatgggaaaaattcatcatgtcaatgttgttcgct |
123 |
Q |
| |
|
|||||||||||| | || ||| | ||| |||||||||| | || ||||| || ||||| ||||||||||||||||| |||||||| |||||||| || | |
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|
| T |
8962159 |
gttgctgtgaagatgcttaataatacagaaggagatgggagagagttcataaatgaagtaggaactatgggaaaaatccatcatgttaatgttgtccggt |
8962258 |
T |
|
| Q |
124 |
tactcggattttgtgctgatggatt |
148 |
Q |
| |
|
|||| || ||||| ||||||||||| |
|
|
| T |
8962259 |
tacttggcttttgcgctgatggatt |
8962283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 166
Target Start/End: Complemental strand, 8979455 - 8979311
Alignment:
| Q |
22 |
tggttgctgtgaaggttctcaatgaaacacaaggagatggaaacgatttcatcaacgaagtcggaactatgggaaaaattcatcatgtcaatgttgttcg |
121 |
Q |
| |
|
|||||||||||||| ||||||| | ||| ||||||| || || || ||||| | |||||| |||| |||||||||||| || || ||||||||||||| |
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|
| T |
8979455 |
tggttgctgtgaagattctcaacaatacagaaggagacgggaaagagttcattagcgaagtgggaattatgggaaaaatccaccacatcaatgttgttcg |
8979356 |
T |
|
| Q |
122 |
cttactcggattttgtgctgatggattccaccgtgctcttgtcta |
166 |
Q |
| |
|
|| || || || ||||| || ||| | || |||| ||||||||| |
|
|
| T |
8979355 |
attgcttggcttctgtgcagagggaattcatcgtgttcttgtcta |
8979311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 54 - 148
Target Start/End: Complemental strand, 9466956 - 9466862
Alignment:
| Q |
54 |
ggagatggaaacgatttcatcaacgaagtcggaactatgggaaaaattcatcatgtcaatgttgttcgcttactcggattttgtgctgatggatt |
148 |
Q |
| |
|
|||||||| || || ||||| || ||||| ||||||||||||||||| |||||| | |||||||| || || || || || || ||||||||||| |
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| T |
9466956 |
ggagatggtaaggagttcataaatgaagtgggaactatgggaaaaatccatcatcttaatgttgtccgtttgcttggcttctgcgctgatggatt |
9466862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 146
Target Start/End: Original strand, 9495178 - 9495255
Alignment:
| Q |
69 |
ttcatcaacgaagtcggaactatgggaaaaattcatcatgtcaatgttgttcgcttactcggattttgtgctgatgga |
146 |
Q |
| |
|
|||||||| ||||| ||||| ||| | |||||||||| ||||||||||||| |||| | || |||||||| |||||| |
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|
| T |
9495178 |
ttcatcaatgaagtaggaacaatgagtcaaattcatcacgtcaatgttgttcacttagttggcttttgtgccgatgga |
9495255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 54 - 196
Target Start/End: Original strand, 9171382 - 9171524
Alignment:
| Q |
54 |
ggagatggaaacgatttcatcaacgaagtcggaactatgggaaaaattcatcatgtcaatgttgttcgcttactcggattttgtgctgatggattccacc |
153 |
Q |
| |
|
|||||||| || || ||||| || ||||| ||||||||||| ||||| || ||| | |||||||| || || || || ||||| || |||||||| || | |
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|
| T |
9171382 |
ggagatgggaaggagttcataaatgaagtgggaactatgggcaaaatccaccatctaaatgttgtccgtttgcttggcttttgcgccgatggatttcatc |
9171481 |
T |
|
| Q |
154 |
gtgctcttgtctatgatttctttccgaatggctccttgcagaa |
196 |
Q |
| |
|
||||||| ||||||||||| || || ||||| || |||||||| |
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|
| T |
9171482 |
gtgctctagtctatgattttttcccaaatggttctttgcagaa |
9171524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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