View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21252_high_1 (Length: 508)
Name: NF21252_high_1
Description: NF21252
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21252_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 442; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 22 - 479
Target Start/End: Complemental strand, 52013312 - 52012855
Alignment:
| Q |
22 |
catcatcaaggagtgaaatttcaaacaacaaatcccaatcatgagtcataaccaaaacctgaccaaaaccagtaactacagcaataacttcaccatcagg |
121 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52013312 |
catcatcaaggagtgaaatttcatacaacaaatcccaatcatgagtcataaccaaaacctgaccaaaaccagtaactacagcaataacttcaccatcagg |
52013213 |
T |
|
| Q |
122 |
actaagcgaaatgcaattaacaccaccatcaacattcccaacaacttgagtcacattcgcatcaacatcaaatagcaacaaaagcccgttcgaagttcca |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52013212 |
actaagcgaaatgcaattaacaccaccatcaacattcccaacaacttgagtcacattcgcatcaacatcaaatagcaacaaaagcccgttcgaagttcca |
52013113 |
T |
|
| Q |
222 |
agtagaagcgcttctttctccataagataatcaaaagaagtaacggtatcatcaggttcaagatcaacgatggcatgattagtggataaggatgaattgt |
321 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52013112 |
agtagaagcgcttctttctccataagataatcaaaagaagtaacggtatcatcaggttcaagatcaacgatggcatgattagtggataaggatgaattgt |
52013013 |
T |
|
| Q |
322 |
tgttactccaagcttgtttttggtggaaggaagagagatgagaagtgtaaatgaaattgtgggaagagaggaagaagagacggttgcgttcgatgtctaa |
421 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52013012 |
tgttactccaagcttgtttttggtggaaggaagagagatgagaagtgtagatgaaattgtgggaagagaggaagaagagacggttgcgttcgatgtctaa |
52012913 |
T |
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| Q |
422 |
ggcggagaatcggaaagtttcatcgtcggagtttaatcggagaagtaaaggaacttca |
479 |
Q |
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|||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
52012912 |
ggcggagaatcgaaaagtttcgtcgtcggagtttaatcggagaagtaaaggaacttca |
52012855 |
T |
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