View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21252_high_4 (Length: 374)
Name: NF21252_high_4
Description: NF21252
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21252_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 30 - 364
Target Start/End: Original strand, 47680669 - 47680999
Alignment:
| Q |
30 |
cgataaccctacagaaacaattgaaggtattgtgcgaaccctacaaaaactctcaagtaagtagaaattgagtaagcataagtaattgataaaggatata |
129 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| | |||||||||||||||||||||||||||||||||||| |
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| T |
47680669 |
cgataaccctacagaaacaattgaaggtattgtgcgaaccctatagaaactctcaagtaatttgaaattgagtaagcataagtaattgataaaggatat- |
47680767 |
T |
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| Q |
130 |
tataattgatgaattatatcagtaaactatcaaaacgacggttaaataggagcaaaactcgtactcaaaggacacttaaaatgaaacgaatgaggtattg |
229 |
Q |
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| T |
47680768 |
---aattgatgaattatatcagtaaactatcaaaacgacggttaaataggaacaaaactcgtactcaaaggacacttaaaaagaaacgaatgaggtattg |
47680864 |
T |
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| Q |
230 |
tgtgaatctacatgatcgcaatcattcttgtatttcttgcataatgccttttggacattgttatgatgagtatatcttaaattattgagaaagtactaaa |
329 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | |
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| T |
47680865 |
tgtgaatctacatgaaagcaatcattcttgtatttcttgcataatgccttttggacattgttatgatgagtatagcttaaattattgagaaagtactaca |
47680964 |
T |
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| Q |
330 |
acacaagacgatttttgggaagacttagacctatg |
364 |
Q |
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||| ||||||||||||||||||||||||||||||| |
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| T |
47680965 |
acaaaagacgatttttgggaagacttagacctatg |
47680999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 130 - 178
Target Start/End: Original strand, 408567 - 408615
Alignment:
| Q |
130 |
tataattgatgaattatatcagtaaactatcaaaacgacggttaaatag |
178 |
Q |
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|||||||||| |||| |||| |||| |||||||||||||||||||||| |
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| T |
408567 |
tataattgataaattgtatccataaaatatcaaaacgacggttaaatag |
408615 |
T |
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