View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21252_high_5 (Length: 356)

Name: NF21252_high_5
Description: NF21252
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21252_high_5
NF21252_high_5
[»] chr1 (21 HSPs)
chr1 (14-328)||(12727753-12728066)
chr1 (14-96)||(31822734-31822816)
chr1 (14-94)||(16907229-16907309)
chr1 (14-94)||(50002356-50002436)
chr1 (14-89)||(2328315-2328390)
chr1 (14-94)||(10820587-10820667)
chr1 (14-94)||(43057594-43057674)
chr1 (14-89)||(2634924-2634999)
chr1 (18-89)||(7548091-7548162)
chr1 (14-57)||(20054151-20054194)
chr1 (14-57)||(20054607-20054650)
chr1 (14-57)||(20055063-20055106)
chr1 (14-57)||(20055519-20055562)
chr1 (14-57)||(20055975-20056018)
chr1 (14-57)||(20056431-20056474)
chr1 (14-57)||(20057334-20057377)
chr1 (14-89)||(35759679-35759754)
chr1 (14-57)||(38340938-38340981)
chr1 (14-59)||(12883554-12883599)
chr1 (14-78)||(30873021-30873085)
chr1 (14-78)||(52250217-52250281)
[»] chr4 (16 HSPs)
chr4 (14-78)||(8467865-8467929)
chr4 (14-94)||(29628732-29628812)
chr4 (14-94)||(1645814-1645894)
chr4 (18-94)||(3169201-3169277)
chr4 (26-94)||(20309595-20309663)
chr4 (14-57)||(21067766-21067809)
chr4 (14-89)||(51331346-51331421)
chr4 (14-94)||(4127502-4127582)
chr4 (14-54)||(44471390-44471430)
chr4 (14-90)||(49998635-49998711)
chr4 (14-94)||(53854872-53854952)
chr4 (14-57)||(12692064-12692107)
chr4 (14-89)||(50398603-50398678)
chr4 (14-89)||(50399058-50399133)
chr4 (16-78)||(15306164-15306226)
chr4 (14-90)||(41869917-41869993)
[»] chr5 (14 HSPs)
chr5 (14-89)||(39146939-39147014)
chr5 (14-94)||(17445526-17445606)
chr5 (14-78)||(2193827-2193891)
chr5 (14-94)||(8391392-8391472)
chr5 (14-94)||(10927474-10927554)
chr5 (14-94)||(20039545-20039625)
chr5 (14-58)||(21886217-21886261)
chr5 (14-98)||(24182316-24182400)
chr5 (14-57)||(8642105-8642148)
chr5 (14-53)||(10927017-10927056)
chr5 (27-94)||(15513097-15513164)
chr5 (14-57)||(34867822-34867865)
chr5 (14-54)||(3887128-3887168)
chr5 (17-53)||(29680174-29680210)
[»] chr7 (13 HSPs)
chr7 (14-94)||(6719145-6719225)
chr7 (14-89)||(13124772-13124847)
chr7 (14-53)||(28495679-28495718)
chr7 (14-64)||(2193281-2193331)
chr7 (14-64)||(25182386-25182436)
chr7 (15-89)||(28495854-28495928)
chr7 (14-94)||(26957628-26957708)
chr7 (14-53)||(34405662-34405701)
chr7 (14-53)||(36422288-36422327)
chr7 (14-89)||(42515092-42515167)
chr7 (14-56)||(13125207-13125249)
chr7 (16-53)||(2465960-2465997)
chr7 (14-94)||(43233408-43233488)
[»] chr6 (13 HSPs)
chr6 (14-94)||(3652481-3652561)
chr6 (14-53)||(23776477-23776516)
chr6 (14-90)||(13191584-13191660)
chr6 (14-90)||(17027602-17027678)
chr6 (14-98)||(20735686-20735770)
chr6 (14-78)||(20850332-20850396)
chr6 (14-78)||(21311982-21312046)
chr6 (14-57)||(2720635-2720678)
chr6 (14-53)||(6330983-6331022)
chr6 (14-89)||(17731184-17731259)
chr6 (14-89)||(20126253-20126328)
chr6 (14-94)||(23986388-23986468)
chr6 (14-94)||(31821763-31821843)
[»] scaffold0168 (1 HSPs)
scaffold0168 (14-89)||(2742-2817)
[»] scaffold0040 (1 HSPs)
scaffold0040 (14-57)||(2281-2324)
[»] scaffold0020 (1 HSPs)
scaffold0020 (14-89)||(107534-107609)
[»] chr8 (8 HSPs)
chr8 (14-89)||(2044058-2044133)
chr8 (14-89)||(6464981-6465056)
chr8 (14-57)||(41659176-41659219)
chr8 (14-64)||(22549066-22549116)
chr8 (14-53)||(3744674-3744713)
chr8 (16-56)||(10844688-10844728)
chr8 (14-54)||(17103116-17103156)
chr8 (14-62)||(25147563-25147611)
[»] chr2 (10 HSPs)
chr2 (14-89)||(33174958-33175033)
chr2 (14-64)||(1707066-1707116)
chr2 (14-98)||(83008-83092)
chr2 (14-78)||(8073903-8073967)
chr2 (14-94)||(16379388-16379468)
chr2 (14-94)||(18447989-18448069)
chr2 (14-53)||(8256562-8256601)
chr2 (14-57)||(25338068-25338111)
chr2 (14-78)||(25434127-25434191)
chr2 (14-54)||(30966269-30966309)
[»] scaffold0322 (1 HSPs)
scaffold0322 (14-90)||(18965-19041)
[»] scaffold0088 (1 HSPs)
scaffold0088 (14-94)||(23668-23748)
[»] chr3 (14 HSPs)
chr3 (14-94)||(25230319-25230399)
chr3 (14-94)||(25230776-25230856)
chr3 (14-94)||(25237906-25237986)
chr3 (14-94)||(25238363-25238443)
chr3 (14-53)||(11180105-11180144)
chr3 (14-53)||(13150170-13150209)
chr3 (14-53)||(20885188-20885227)
chr3 (14-89)||(27187401-27187476)
chr3 (14-57)||(28561778-28561821)
chr3 (14-89)||(30529687-30529762)
chr3 (14-57)||(31284347-31284390)
chr3 (14-53)||(32227292-32227331)
chr3 (14-53)||(32227536-32227575)
chr3 (16-53)||(39640973-39641010)
[»] scaffold0047 (2 HSPs)
scaffold0047 (14-89)||(18205-18280)
scaffold0047 (14-78)||(17669-17733)
[»] scaffold0002 (1 HSPs)
scaffold0002 (14-53)||(154793-154832)
[»] scaffold0243 (1 HSPs)
scaffold0243 (14-56)||(1253-1295)
[»] scaffold0499 (1 HSPs)
scaffold0499 (14-78)||(2122-2186)
[»] scaffold0022 (1 HSPs)
scaffold0022 (14-54)||(162749-162789)


Alignment Details
Target: chr1 (Bit Score: 271; Significance: 1e-151; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 14 - 328
Target Start/End: Complemental strand, 12728066 - 12727753
Alignment:
Q  14 attcttataagtcttccttcaaccatgttgtcccatacctgcacagtctcataatccctttcatttcaatgtgatttggttgcctcgtcagcctcagacg 113  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||    
T  12728066 attcttataagtcttccttcaaccatgttgtcccatacctacacagtctcagaatccctttcatttcaatgtgattcggttgcctcgtcagcctcagacg 12727967  T
Q  114 ttacatgaggggagttaggtgatagtgcagaagttaagagaggagtaagtattagtctattgagttgagttatcaaagttcacttatcatattgtaatta 213  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| ||||||||||||    
T  12727966 ttacataaggggagttaggtgatagtgcagaagttaagagaggagtaagcattagtctattgagttgagttatcaaacttcacttataatattgtaatta 12727867  T
Q  214 agagtaaaaagaacactttaatgccctgttttactttctgtgttttgattttattttatctttcaactgataaacctaaaagataaagatccaaaatctc 313  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  12727866 agagtaaaaagaacac-ttaatgccctgttttactttctgtgttttgattttattttatctttcaactgataaatctaaaagataaagatccaaaatctc 12727768  T
Q  314 ctccaccactgtctt 328  Q
    |||||||| ||||||    
T  12727767 ctccaccattgtctt 12727753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 14 - 96
Target Start/End: Original strand, 31822734 - 31822816
Alignment:
Q  14 attcttataagtcttccttcaaccatgttgtcccatacctgcacagtctcataatccctttcatttcaatgtgatttggttgc 96  Q
    |||||||||| ||||||||||||||||| ||| ||||||| ||| | ||||| |||||| |||||   |||||||||||||||    
T  31822734 attcttataaatcttccttcaaccatgtagtctcatacctacacggcctcatgatccctctcattctgatgtgatttggttgc 31822816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 14 - 94
Target Start/End: Complemental strand, 16907309 - 16907229
Alignment:
Q  14 attcttataagtcttccttcaaccatgttgtcccatacctgcacagtctcataatccctttcatttcaatgtgatttggtt 94  Q
    ||||||||||| |||| ||||||||||  ||  |||||||||||||||||| ||||||| ||||||  || ||||||||||    
T  16907309 attcttataagccttctttcaaccatgcagtttcatacctgcacagtctcaaaatccctctcattttgatatgatttggtt 16907229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 14 - 94
Target Start/End: Original strand, 50002356 - 50002436
Alignment:
Q  14 attcttataagtcttccttcaaccatgttgtcccatacctgcacagtctcataatccctttcatttcaatgtgatttggtt 94  Q
    ||||||||||| |||||||||||||||| ||||||| ||| ||| | ||||| |||||| ||||| | |||||||| ||||    
T  50002356 attcttataagccttccttcaaccatgtagtcccatgcctacacggcctcatgatccctctcattccgatgtgattcggtt 50002436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 89
Target Start/End: Complemental strand, 2328390 - 2328315
Alignment:
Q  14 attcttataagtcttccttcaaccatgttgtcccatacctgcacagtctcataatccctttcatttcaatgtgatt 89  Q
    ||||||||||| |||||||||||||||  |||||||||||| || | ||||||||  || ||||| ||||||||||    
T  2328390 attcttataagccttccttcaaccatgcagtcccatacctgtacggcctcataatttctctcattccaatgtgatt 2328315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 94
Target Start/End: Complemental strand, 10820667 - 10820587
Alignment:
Q  14 attcttataagtcttccttcaaccatgttgtcccatacctgcacagtctcataatccctttcatttcaatgtgatttggtt 94  Q
    |||||||||| ||||||||||||||||| |||| |||| | ||| | |||||||||||| ||| | | |||||||| ||||    
T  10820667 attcttataaatcttccttcaaccatgtagtccaatacatacaccgcctcataatccctctcactccgatgtgattcggtt 10820587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 94
Target Start/End: Original strand, 43057594 - 43057674
Alignment:
Q  14 attcttataagtcttccttcaaccatgttgtcccatacctgcacagtctcataatccctttcatttcaatgtgatttggtt 94  Q
    ||||||||||| |||||||||||||||| ||| ||||||| ||| | ||||  |||||| ||||| | |||||||| ||||    
T  43057594 attcttataagccttccttcaaccatgtagtctcatacctacacggcctcaggatccctctcattccgatgtgattcggtt 43057674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 14 - 89
Target Start/End: Complemental strand, 2634999 - 2634924
Alignment:
Q  14 attcttataagtcttccttcaaccatgttgtcccatacctgcacagtctcataatccctttcatttcaatgtgatt 89  Q
    |||||||| |||  |||||||||||||  ||||||||||||||||  ||||| |||||| ||||| | ||||||||    
T  2634999 attcttatgagttatccttcaaccatgcagtcccatacctgcacaacctcatgatccctctcattccgatgtgatt 2634924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 18 - 89
Target Start/End: Complemental strand, 7548162 - 7548091
Alignment:
Q  18 ttataagtcttccttcaaccatgttgtcccatacctgcacagtctcataatccctttcatttcaatgtgatt 89  Q
    ||||||||||||||| || ||||| ||| ||||||| ||| | ||||| |||||| ||||| ||||||||||    
T  7548162 ttataagtcttcctttaatcatgtagtctcatacctacacggcctcatgatccctctcattgcaatgtgatt 7548091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 14 - 57
Target Start/End: Original strand, 20054151 - 20054194
Alignment:
Q  14 attcttataagtcttccttcaaccatgttgtcccatacctgcac 57  Q
    ||||||||||| |||||||||||||||  |||||||||||||||    
T  20054151 attcttataagccttccttcaaccatgcagtcccatacctgcac 20054194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 14 - 57
Target Start/End: Original strand, 20054607 - 20054650
Alignment:
Q  14 attcttataagtcttccttcaaccatgttgtcccatacctgcac 57  Q
    ||||||||||| |||||||||||||||  |||||||||||||||    
T  20054607 attcttataagccttccttcaaccatgcagtcccatacctgcac 20054650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 14 - 57
Target Start/End: Original strand, 20055063 - 20055106
Alignment:
Q  14 attcttataagtcttccttcaaccatgttgtcccatacctgcac 57  Q
    ||||||||||| |||||||||||||||  |||||||||||||||    
T  20055063 attcttataagccttccttcaaccatgcagtcccatacctgcac 20055106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 14 - 57
Target Start/End: Original strand, 20055519 - 20055562
Alignment:
Q  14 attcttataagtcttccttcaaccatgttgtcccatacctgcac 57  Q
    ||||||||||| |||||||||||||||  |||||||||||||||    
T  20055519 attcttataagccttccttcaaccatgcagtcccatacctgcac 20055562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 14 - 57
Target Start/End: Original strand, 20055975 - 20056018
Alignment:
Q  14 attcttataagtcttccttcaaccatgttgtcccatacctgcac 57  Q
    ||||||||||| |||||||||||||||  |||||||||||||||    
T  20055975 attcttataagccttccttcaaccatgcagtcccatacctgcac 20056018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 14 - 57
Target Start/End: Original strand, 20056431 - 20056474
Alignment:
Q  14 attcttataagtcttccttcaaccatgttgtcccatacctgcac 57  Q
    ||||||||||| |||||||||||||||  |||||||||||||||    
T  20056431 attcttataagccttccttcaaccatgcagtcccatacctgcac 20056474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 14 - 57
Target Start/End: Original strand, 20057334 - 20057377
Alignment:
Q  14 attcttataagtcttccttcaaccatgttgtcccatacctgcac 57  Q
    ||||||||||| |||||||||||||||  |||||||||||||||    
T  20057334 attcttataagccttccttcaaccatgcagtcccatacctgcac 20057377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 14 - 89
Target Start/End: Original strand, 35759679 - 35759754
Alignment:
Q  14 attcttataagtcttccttcaaccatgttgtcccatacctgcacagtctcataatccctttcatttcaatgtgatt 89  Q
    |||||||||||  ||||||||||||||  ||||||||||||||| | ||||  |||||| ||||| | ||||||||    
T  35759679 attcttataagctttccttcaaccatgcagtcccatacctgcacggcctcaggatccctctcattccgatgtgatt 35759754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 14 - 57
Target Start/End: Complemental strand, 38340981 - 38340938
Alignment:
Q  14 attcttataagtcttccttcaaccatgttgtcccatacctgcac 57  Q
    ||||||||||| |||||||||||||||  |||||||||||||||    
T  38340981 attcttataagccttccttcaaccatgcagtcccatacctgcac 38340938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 59
Target Start/End: Complemental strand, 12883599 - 12883554
Alignment:
Q  14 attcttataagtcttccttcaaccatgttgtcccatacctgcacag 59  Q
    |||||||||||| ||||||||| ||||  |||||||||||||||||    
T  12883599 attcttataagtattccttcaatcatgcagtcccatacctgcacag 12883554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 78
Target Start/End: Original strand, 30873021 - 30873085
Alignment:
Q  14 attcttataagtcttccttcaaccatgttgtcccatacctgcacagtctcataatccctttcatt 78  Q
    ||||||| ||||||||||||||||||   ||| ||||||||||| | |||| ||||||| |||||    
T  30873021 attcttaaaagtcttccttcaaccatacagtctcatacctgcacggcctcagaatccctctcatt 30873085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 78
Target Start/End: Complemental strand, 52250281 - 52250217
Alignment:
Q  14 attcttataagtcttccttcaaccatgttgtcccatacctgcacagtctcataatccctttcatt 78  Q
    ||||||||||| |||||||| ||||||| ||||||||||| ||  | ||||| |||||| |||||    
T  52250281 attcttataagccttccttcgaccatgtagtcccatacctacaaggcctcatgatccctctcatt 52250217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 6e-19; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 14 - 78
Target Start/End: Original strand, 8467865 - 8467929
Alignment:
Q  14 attcttataagtcttccttcaaccatgttgtcccatacctgcacagtctcataatccctttcatt 78  Q
    |||||||||||||||||||||||||||| ||| ||||||||||||||||||  ||||||||||||    
T  8467865 attcttataagtcttccttcaaccatgtagtctcatacctgcacagtctcaggatccctttcatt 8467929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 14 - 94
Target Start/End: Original strand, 29628732 - 29628812
Alignment:
Q  14 attcttataagtcttccttcaaccatgttgtcccatacctgcacagtctcataatccctttcatttcaatgtgatttggtt 94  Q
    |||||||||||||||||||||||||||| ||| ||||||| ||| | ||||  |||||| ||||||| |||||||| ||||    
T  29628732 attcttataagtcttccttcaaccatgtagtctcatacctacacggcctcaggatccctctcatttcgatgtgattcggtt 29628812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 14 - 94
Target Start/End: Original strand, 1645814 - 1645894
Alignment:
Q  14 attcttataagtcttccttcaaccatgttgtcccatacctgcacagtctcataatccctttcatttcaatgtgatttggtt 94  Q
    |||||||||||||||||||||||||||| ||||||||||| ||| | ||||  || ||| ||||| | |||||||| ||||    
T  1645814 attcttataagtcttccttcaaccatgtagtcccatacctacacggcctcaagattcctctcattccgatgtgattcggtt 1645894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 18 - 94
Target Start/End: Complemental strand, 3169277 - 3169201
Alignment:
Q  18 ttataagtcttccttcaaccatgttgtcccatacctgcacagtctcataatccctttcatttcaatgtgatttggtt 94  Q
    |||||||||||||||||||||||| ||||||||||| ||| | ||||| || ||| ||||| | |||||||| ||||    
T  3169277 ttataagtcttccttcaaccatgtagtcccatacctacacggcctcatgattcctctcattccgatgtgattcggtt 3169201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 26 - 94
Target Start/End: Original strand, 20309595 - 20309663
Alignment:
Q  26 cttccttcaaccatgttgtcccatacctgcacagtctcataatccctttcatttcaatgtgatttggtt 94  Q
    |||||||||||||||| ||| |||||||||| |||||||| |||||| ||||| | |||||||| ||||    
T  20309595 cttccttcaaccatgtagtcacatacctgcaaagtctcatgatccctctcattccgatgtgattcggtt 20309663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 57
Target Start/End: Complemental strand, 21067809 - 21067766
Alignment:
Q  14 attcttataagtcttccttcaaccatgttgtcccatacctgcac 57  Q
    |||||||||||||||||||||||||||  |||||||||||||||    
T  21067809 attcttataagtcttccttcaaccatgcagtcccatacctgcac 21067766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 89
Target Start/End: Original strand, 51331346 - 51331421
Alignment:
Q  14 attcttataagtcttccttcaaccatgttgtcccatacctgcacagtctcataatccctttcatttcaatgtgatt 89  Q
    ||||||||||| |||||||||||||||| ||||||||||| ||| | ||||| || ||| ||||| | ||||||||    
T  51331346 attcttataagccttccttcaaccatgtagtcccatacctacacggcctcatgattcctctcattccgatgtgatt 51331421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 94
Target Start/End: Original strand, 4127502 - 4127582
Alignment:
Q  14 attcttataagtcttccttcaaccatgttgtcccatacctgcacagtctcataatccctttcatttcaatgtgatttggtt 94  Q
    ||||||||||||||||||||||| |||| ||||||||||| ||  | ||||  |||||| ||||| | |||||||| ||||    
T  4127502 attcttataagtcttccttcaactatgtagtcccatacctacatggcctcaggatccctctcattccgatgtgattcggtt 4127582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 54
Target Start/End: Original strand, 44471390 - 44471430
Alignment:
Q  14 attcttataagtcttccttcaaccatgttgtcccatacctg 54  Q
    |||||||||||||||||||||||||||| ||| ||||||||    
T  44471390 attcttataagtcttccttcaaccatgtagtctcatacctg 44471430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 90
Target Start/End: Complemental strand, 49998711 - 49998635
Alignment:
Q  14 attcttataagtcttccttcaaccatgttgtcccatacctgcacagtctcataatccctttcatttcaatgtgattt 90  Q
    |||||||||||||||||||||||||||  ||||||| ||| ||||| || |  |||||| ||||| | |||||||||    
T  49998711 attcttataagtcttccttcaaccatgcagtcccatgcctacacagccttaggatccctctcattccgatgtgattt 49998635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 94
Target Start/End: Original strand, 53854872 - 53854952
Alignment:
Q  14 attcttataagtcttccttcaaccatgttgtcccatacctgcacagtctcataatccctttcatttcaatgtgatttggtt 94  Q
    |||||||||||||||||||||||||| | ||| ||||||| ||| |  |||| |||||| ||||| | |||||||| ||||    
T  53854872 attcttataagtcttccttcaaccatatagtctcatacctacactgcttcatgatccctctcattccgatgtgattcggtt 53854952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 14 - 57
Target Start/End: Original strand, 12692064 - 12692107
Alignment:
Q  14 attcttataagtcttccttcaaccatgttgtcccatacctgcac 57  Q
    ||||||||||| |||||||||||||||  |||||||||||||||    
T  12692064 attcttataagccttccttcaaccatgcagtcccatacctgcac 12692107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 14 - 89
Target Start/End: Original strand, 50398603 - 50398678
Alignment:
Q  14 attcttataagtcttccttcaaccatgttgtcccatacctgcacagtctcataatccctttcatttcaatgtgatt 89  Q
    ||||||||||| |||||||||||||||| |||| |||||| ||| | ||||  |||||| ||||| | ||||||||    
T  50398603 attcttataagccttccttcaaccatgtagtcctatacctacacggcctcaggatccctctcattccgatgtgatt 50398678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 14 - 89
Target Start/End: Original strand, 50399058 - 50399133
Alignment:
Q  14 attcttataagtcttccttcaaccatgttgtcccatacctgcacagtctcataatccctttcatttcaatgtgatt 89  Q
    ||||||||||| ||||||||||||||||  || ||||||| ||| ||||||  |||||| ||||| | ||||||||    
T  50399058 attcttataagccttccttcaaccatgtaatctcatacctacacggtctcaggatccctctcattccgatgtgatt 50399133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 78
Target Start/End: Original strand, 15306164 - 15306226
Alignment:
Q  16 tcttataagtcttccttcaaccatgttgtcccatacctgcacagtctcataatccctttcatt 78  Q
    |||||||||||||| ||| ||||||| ||||||||||| ||||| ||||  |||||| |||||    
T  15306164 tcttataagtcttctttcgaccatgtagtcccatacctacacagcctcaggatccctctcatt 15306226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 90
Target Start/End: Complemental strand, 41869993 - 41869917
Alignment:
Q  14 attcttataagtcttccttcaaccatgttgtcccatacctgcacagtctcataatccctttcatttcaatgtgattt 90  Q
    |||||||||||||||||||||| ||||  ||||||||  || |||||||||  |||||| ||| | | |||||||||    
T  41869993 attcttataagtcttccttcaatcatgcagtcccatatatgtacagtctcaggatccctctcactccgatgtgattt 41869917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 5e-16; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 14 - 89
Target Start/End: Complemental strand, 39147014 - 39146939
Alignment:
Q  14 attcttataagtcttccttcaaccatgttgtcccatacctgcacagtctcataatccctttcatttcaatgtgatt 89  Q
    |||||||||||||| ||||||||||||| ||||||||||| ||| | ||||| |||||| ||||||| ||||||||    
T  39147014 attcttataagtctaccttcaaccatgtagtcccatacctacacggcctcatgatccctctcatttcgatgtgatt 39146939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 14 - 94
Target Start/End: Original strand, 17445526 - 17445606
Alignment:
Q  14 attcttataagtcttccttcaaccatgttgtcccatacctgcacagtctcataatccctttcatttcaatgtgatttggtt 94  Q
    ||||||||||| |||||||||||||||| ||||||| ||| ||| | ||||  |||||| ||||||| |||||||| ||||    
T  17445526 attcttataagccttccttcaaccatgtagtcccatgcctacacggcctcaggatccctctcatttcgatgtgattcggtt 17445606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 78
Target Start/End: Complemental strand, 2193891 - 2193827
Alignment:
Q  14 attcttataagtcttccttcaaccatgttgtcccatacctgcacagtctcataatccctttcatt 78  Q
    ||||||||||| |||||||||||||||| ||||||||||| ||  | ||||| |||||| |||||    
T  2193891 attcttataagccttccttcaaccatgtagtcccatacctacaaggcctcatgatccctctcatt 2193827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 94
Target Start/End: Original strand, 8391392 - 8391472
Alignment:
Q  14 attcttataagtcttccttcaaccatgttgtcccatacctgcacagtctcataatccctttcatttcaatgtgatttggtt 94  Q
    |||||||||||||||||||||| ||||| ||| ||| ||| ||| | |||| ||||||| ||||| | |||||||| ||||    
T  8391392 attcttataagtcttccttcaatcatgtagtctcatgcctacacggcctcagaatccctctcattccgatgtgattcggtt 8391472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 94
Target Start/End: Original strand, 10927474 - 10927554
Alignment:
Q  14 attcttataagtcttccttcaaccatgttgtcccatacctgcacagtctcataatccctttcatttcaatgtgatttggtt 94  Q
    ||||||||||| |||||||||||||||| ||| ||||||| ||| | ||||  |||||| ||||| | |||||||| ||||    
T  10927474 attcttataagccttccttcaaccatgtagtctcatacctacacggcctcaagatccctctcattccgatgtgattcggtt 10927554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 94
Target Start/End: Original strand, 20039545 - 20039625
Alignment:
Q  14 attcttataagtcttccttcaaccatgttgtcccatacctgcacagtctcataatccctttcatttcaatgtgatttggtt 94  Q
    ||||||||||| ||||||||||| |||| |||| |||||| ||| | ||||| |||||| ||||| | |||||||| ||||    
T  20039545 attcttataagccttccttcaactatgtagtcctatacctacacggcctcatgatccctctcattccgatgtgattcggtt 20039625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 58
Target Start/End: Original strand, 21886217 - 21886261
Alignment:
Q  14 attcttataagtcttccttcaaccatgttgtcccatacctgcaca 58  Q
    ||||||||||| |||||||||||||||  ||||||||||||||||    
T  21886217 attcttataagccttccttcaaccatgcagtcccatacctgcaca 21886261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 98
Target Start/End: Original strand, 24182316 - 24182400
Alignment:
Q  14 attcttataagtcttccttcaaccatgttgtcccatacctgcacagtctcataatccctttcatttcaatgtgatttggttgcct 98  Q
    ||||||||||| |||||||||||||| | ||| ||||| |||||  |||||  |||||| |||||  |||||||||| |||||||    
T  24182316 attcttataagccttccttcaaccatttcgtctcatacttgcacgttctcaagatccctctcattctaatgtgatttcgttgcct 24182400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 14 - 57
Target Start/End: Original strand, 8642105 - 8642148
Alignment:
Q  14 attcttataagtcttccttcaaccatgttgtcccatacctgcac 57  Q
    ||||||||||| |||||||||||||||  |||||||||||||||    
T  8642105 attcttataagccttccttcaaccatgcagtcccatacctgcac 8642148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 14 - 53
Target Start/End: Original strand, 10927017 - 10927056
Alignment:
Q  14 attcttataagtcttccttcaaccatgttgtcccatacct 53  Q
    ||||||||||| |||||||||||||||| |||||||||||    
T  10927017 attcttataagccttccttcaaccatgtagtcccatacct 10927056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 27 - 94
Target Start/End: Original strand, 15513097 - 15513164
Alignment:
Q  27 ttccttcaaccatgttgtcccatacctgcacagtctcataatccctttcatttcaatgtgatttggtt 94  Q
    ||||||||||||||| ||||||||||| ||||| || || |||||| ||||| | |||||||| ||||    
T  15513097 ttccttcaaccatgtagtcccatacctacacagcctaatgatccctctcattccgatgtgattcggtt 15513164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 14 - 57
Target Start/End: Complemental strand, 34867865 - 34867822
Alignment:
Q  14 attcttataagtcttccttcaaccatgttgtcccatacctgcac 57  Q
    ||||||||||| |||||||||||||||  |||||||||||||||    
T  34867865 attcttataagccttccttcaaccatgcagtcccatacctgcac 34867822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 54
Target Start/End: Original strand, 3887128 - 3887168
Alignment:
Q  14 attcttataagtcttccttcaaccatgttgtcccatacctg 54  Q
    |||| ||||||||||||||||||||||  ||||||||||||    
T  3887128 attcatataagtcttccttcaaccatgcagtcccatacctg 3887168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 53
Target Start/End: Original strand, 29680174 - 29680210
Alignment:
Q  17 cttataagtcttccttcaaccatgttgtcccatacct 53  Q
    |||||||| |||||||||||||||| |||||||||||    
T  29680174 cttataagccttccttcaaccatgtagtcccatacct 29680210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 14 - 94
Target Start/End: Original strand, 6719145 - 6719225
Alignment:
Q  14 attcttataagtcttccttcaaccatgttgtcccatacctgcacagtctcataatccctttcatttcaatgtgatttggtt 94  Q
    |||||||||||  ||||||||||||||| ||||||||||| ||||| ||||  |||||| ||||| |||||||||| ||||    
T  6719145 attcttataagcattccttcaaccatgtagtcccatacctacacagcctcaggatccctctcattccaatgtgattcggtt 6719225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 89
Target Start/End: Original strand, 13124772 - 13124847
Alignment:
Q  14 attcttataagtcttccttcaaccatgttgtcccatacctgcacagtctcataatccctttcatttcaatgtgatt 89  Q
    ||||||||||| |||||||||||||||  ||||||||||||||| | ||||  |||||| ||||| |||| |||||    
T  13124772 attcttataagccttccttcaaccatgcagtcccatacctgcacggcctcaagatccctctcattccaatatgatt 13124847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 53
Target Start/End: Original strand, 28495679 - 28495718
Alignment:
Q  14 attcttataagtcttccttcaaccatgttgtcccatacct 53  Q
    |||||||||||||||||||||||||||| |||||||||||    
T  28495679 attcttataagtcttccttcaaccatgtagtcccatacct 28495718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 14 - 64
Target Start/End: Complemental strand, 2193331 - 2193281
Alignment:
Q  14 attcttataagtcttccttcaaccatgttgtcccatacctgcacagtctca 64  Q
    ||||||||||| |||||||||||||||  ||||||||||||||| ||||||    
T  2193331 attcttataagccttccttcaaccatgcagtcccatacctgcacggtctca 2193281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 14 - 64
Target Start/End: Complemental strand, 25182436 - 25182386
Alignment:
Q  14 attcttataagtcttccttcaaccatgttgtcccatacctgcacagtctca 64  Q
    |||||||||||||||||||||||||||  ||| ||||| ||||||||||||    
T  25182436 attcttataagtcttccttcaaccatgcagtctcatacttgcacagtctca 25182386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 89
Target Start/End: Complemental strand, 28495928 - 28495854
Alignment:
Q  15 ttcttataagtcttccttcaaccatgttgtcccatacctgcacagtctcataatccctttcatttcaatgtgatt 89  Q
    |||||||||| |||||||||||||||| ||||||||||| ||| | ||||  |||||| ||||| | ||||||||    
T  28495928 ttcttataagccttccttcaaccatgtagtcccatacctacacggcctcaagatccctctcattccgatgtgatt 28495854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 94
Target Start/End: Original strand, 26957628 - 26957708
Alignment:
Q  14 attcttataagtcttccttcaaccatgttgtcccatacctgcacagtctcataatccctttcatttcaatgtgatttggtt 94  Q
    ||||||||||| |||| ||||||||||| || |||||||| ||||| ||||  |||||| ||||| | |||||||| ||||    
T  26957628 attcttataagccttctttcaaccatgtagttccatacctacacagcctcaagatccctctcattccgatgtgattcggtt 26957708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 14 - 53
Target Start/End: Original strand, 34405662 - 34405701
Alignment:
Q  14 attcttataagtcttccttcaaccatgttgtcccatacct 53  Q
    ||||||||||| |||||||||||||||| |||||||||||    
T  34405662 attcttataagccttccttcaaccatgtagtcccatacct 34405701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 14 - 53
Target Start/End: Complemental strand, 36422327 - 36422288
Alignment:
Q  14 attcttataagtcttccttcaaccatgttgtcccatacct 53  Q
    ||||||||||| |||||||||||||||| |||||||||||    
T  36422327 attcttataagccttccttcaaccatgtagtcccatacct 36422288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 14 - 89
Target Start/End: Complemental strand, 42515167 - 42515092
Alignment:
Q  14 attcttataagtcttccttcaaccatgttgtcccatacctgcacagtctcataatccctttcatttcaatgtgatt 89  Q
    |||||||||||||||||||||| ||||  ||| ||||||||||| | ||||  |||||| ||||| | ||||||||    
T  42515167 attcttataagtcttccttcaatcatgcagtctcatacctgcacggcctcaggatccctctcattccgatgtgatt 42515092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 56
Target Start/End: Original strand, 13125207 - 13125249
Alignment:
Q  14 attcttataagtcttccttcaaccatgttgtcccatacctgca 56  Q
    ||||||||||| |||||||||||||||  ||||||||||||||    
T  13125207 attcttataagccttccttcaaccatgcagtcccatacctgca 13125249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 53
Target Start/End: Complemental strand, 2465997 - 2465960
Alignment:
Q  16 tcttataagtcttccttcaaccatgttgtcccatacct 53  Q
    ||||||||| |||||||||||||||| |||||||||||    
T  2465997 tcttataagccttccttcaaccatgtagtcccatacct 2465960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 94
Target Start/End: Complemental strand, 43233488 - 43233408
Alignment:
Q  14 attcttataagtcttccttcaaccatgttgtcccatacctgcacagtctcataatccctttcatttcaatgtgatttggtt 94  Q
    ||||||||||||||||||| ||||||   ||| ||||||| ||| | ||||| |||||| |||||||  ||||||| ||||    
T  43233488 attcttataagtcttcctttaaccatacagtcacatacctacacggcctcatgatccctctcatttcggtgtgattcggtt 43233408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 14 - 94
Target Start/End: Complemental strand, 3652561 - 3652481
Alignment:
Q  14 attcttataagtcttccttcaaccatgttgtcccatacctgcacagtctcataatccctttcatttcaatgtgatttggtt 94  Q
    ||||||||||| |||||||||||||||| ||||||||||| ||||| ||||  |||||| ||||| | |||||||| ||||    
T  3652561 attcttataagccttccttcaaccatgtagtcccatacctacacagcctcaggatccctctcattccgatgtgattcggtt 3652481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 53
Target Start/End: Complemental strand, 23776516 - 23776477
Alignment:
Q  14 attcttataagtcttccttcaaccatgttgtcccatacct 53  Q
    |||||||||||||||||||||||||||| |||||||||||    
T  23776516 attcttataagtcttccttcaaccatgtagtcccatacct 23776477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 90
Target Start/End: Original strand, 13191584 - 13191660
Alignment:
Q  14 attcttataagtcttccttcaaccatgttgtcccatacctgcacagtctcataatccctttcatttcaatgtgattt 90  Q
    ||||||||||| |||||||||||||||  ||||||||||| || ||||| |  |||||| ||||| | |||||||||    
T  13191584 attcttataagccttccttcaaccatgcagtcccatacctacatagtcttaggatccctctcattccgatgtgattt 13191660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 90
Target Start/End: Original strand, 17027602 - 17027678
Alignment:
Q  14 attcttataagtcttccttcaaccatgttgtcccatacctgcacagtctcataatccctttcatttcaatgtgattt 90  Q
    ||||||||||| |||||||||||||||  ||||||||||||||| | |||   |||||| ||||| | |||||||||    
T  17027602 attcttataagccttccttcaaccatgcagtcccatacctgcacggcctctggatccctctcattccgatgtgattt 17027678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 98
Target Start/End: Complemental strand, 20735770 - 20735686
Alignment:
Q  14 attcttataagtcttccttcaaccatgttgtcccatacctgcacagtctcataatccctttcatttcaatgtgatttggttgcct 98  Q
    ||||||||||| |||||| ||| ||||| ||| ||||||| ||||||||||  |||||| |||||   ||||||| |||||||||    
T  20735770 attcttataagccttcctacaatcatgtagtcacatacctacacagtctcaagatccctctcattatgatgtgatctggttgcct 20735686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 78
Target Start/End: Complemental strand, 20850396 - 20850332
Alignment:
Q  14 attcttataagtcttccttcaaccatgttgtcccatacctgcacagtctcataatccctttcatt 78  Q
    ||||||||||| |||||||||||||||  ||||||||||||||| | ||||| | |||| |||||    
T  20850396 attcttataagccttccttcaaccatgcagtcccatacctgcacggcctcatgaaccctctcatt 20850332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 78
Target Start/End: Complemental strand, 21312046 - 21311982
Alignment:
Q  14 attcttataagtcttccttcaaccatgttgtcccatacctgcacagtctcataatccctttcatt 78  Q
    ||||||||||| |||||||||||||||  ||| ||||||||||||| ||||| | |||| |||||    
T  21312046 attcttataagccttccttcaaccatgcagtctcatacctgcacagcctcatgaaccctctcatt 21311982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 14 - 57
Target Start/End: Original strand, 2720635 - 2720678
Alignment:
Q  14 attcttataagtcttccttcaaccatgttgtcccatacctgcac 57  Q
    |||||||||||||||||||||||||||  ||| |||||||||||    
T  2720635 attcttataagtcttccttcaaccatgcagtctcatacctgcac 2720678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 14 - 53
Target Start/End: Original strand, 6330983 - 6331022
Alignment:
Q  14 attcttataagtcttccttcaaccatgttgtcccatacct 53  Q
    |||||||||||||||||||||||||||| ||| |||||||    
T  6330983 attcttataagtcttccttcaaccatgtagtctcatacct 6331022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 14 - 89
Target Start/End: Original strand, 17731184 - 17731259
Alignment:
Q  14 attcttataagtcttccttcaaccatgttgtcccatacctgcacagtctcataatccctttcatttcaatgtgatt 89  Q
    ||||||||||||||||||| |||||||  |||||||||||| || | ||||  |||||| ||||| | ||||||||    
T  17731184 attcttataagtcttcctttaaccatgcagtcccatacctgaacggcctcaggatccctctcattccgatgtgatt 17731259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 14 - 89
Target Start/End: Original strand, 20126253 - 20126328
Alignment:
Q  14 attcttataagtcttccttcaaccatgttgtcccatacctgcacagtctcataatccctttcatttcaatgtgatt 89  Q
    ||||||||||| |||||||||||||||| ||| ||||||| ||||| || |  |||||| ||||| | ||||||||    
T  20126253 attcttataagccttccttcaaccatgtagtctcatacctacacagccttaggatccctctcattccgatgtgatt 20126328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 94
Target Start/End: Original strand, 23986388 - 23986468
Alignment:
Q  14 attcttataagtcttccttcaaccatgttgtcccatacctgcacagtctcataatccctttcatttcaatgtgatttggtt 94  Q
    ||||||||||| || ||||||||||||| ||||||||||| ||| | |||   |||||| ||||| | |||||||| ||||    
T  23986388 attcttataagcctaccttcaaccatgtagtcccatacctacacggcctccggatccctctcattccgatgtgattcggtt 23986468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 94
Target Start/End: Original strand, 31821763 - 31821843
Alignment:
Q  14 attcttataagtcttccttcaaccatgttgtcccatacctgcacagtctcataatccctttcatttcaatgtgatttggtt 94  Q
    |||||||||||  ||||||||||||||| ||| ||||||| ||  | ||||| |||||| ||||| | |||||||| ||||    
T  31821763 attcttataagcattccttcaaccatgtagtctcatacctacatggcctcatgatccctctcattccgatgtgattcggtt 31821843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 14 - 89
Target Start/End: Complemental strand, 2817 - 2742
Alignment:
Q  14 attcttataagtcttccttcaaccatgttgtcccatacctgcacagtctcataatccctttcatttcaatgtgatt 89  Q
    ||||||||||| |||||||||||||||| ||||||||||| ||| | ||||  |||||| ||||||| ||||||||    
T  2817 attcttataagccttccttcaaccatgtagtcccatacctacacggcctcaggatccctctcatttcgatgtgatt 2742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0040 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 57
Target Start/End: Original strand, 2281 - 2324
Alignment:
Q  14 attcttataagtcttccttcaaccatgttgtcccatacctgcac 57  Q
    ||||||||||| |||||||||||||||| |||||||||||||||    
T  2281 attcttataagccttccttcaaccatgtagtcccatacctgcac 2324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 89
Target Start/End: Original strand, 107534 - 107609
Alignment:
Q  14 attcttataagtcttccttcaaccatgttgtcccatacctgcacagtctcataatccctttcatttcaatgtgatt 89  Q
    ||||||||||| |||||||||||||||  |||||||||||| || | |||| ||||||| ||||| | ||||||||    
T  107534 attcttataagccttccttcaaccatgcagtcccatacctgtacggcctcagaatccctctcattccgatgtgatt 107609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 89
Target Start/End: Complemental strand, 2044133 - 2044058
Alignment:
Q  14 attcttataagtcttccttcaaccatgttgtcccatacctgcacagtctcataatccctttcatttcaatgtgatt 89  Q
    ||||||||||| |||||||||||||||| ||| ||||||| ||||| ||||  |||||| ||||| | ||||||||    
T  2044133 attcttataagccttccttcaaccatgtagtctcatacctacacagcctcaggatccctctcattccgatgtgatt 2044058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 89
Target Start/End: Original strand, 6464981 - 6465056
Alignment:
Q  14 attcttataagtcttccttcaaccatgttgtcccatacctgcacagtctcataatccctttcatttcaatgtgatt 89  Q
    ||||||||||| |||||||||||||||| || |||||||| ||| | ||||| || ||| ||||| ||||||||||    
T  6464981 attcttataagccttccttcaaccatgtagttccatacctacacggcctcatgattcctctcattccaatgtgatt 6465056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 57
Target Start/End: Original strand, 41659176 - 41659219
Alignment:
Q  14 attcttataagtcttccttcaaccatgttgtcccatacctgcac 57  Q
    |||||||||||||||||||||||||||  |||||||||||||||    
T  41659176 attcttataagtcttccttcaaccatgcagtcccatacctgcac 41659219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 14 - 64
Target Start/End: Original strand, 22549066 - 22549116
Alignment:
Q  14 attcttataagtcttccttcaaccatgttgtcccatacctgcacagtctca 64  Q
    |||||||||||||||||||||||||||  ||| ||||||||||||| ||||    
T  22549066 attcttataagtcttccttcaaccatgcagtcacatacctgcacagcctca 22549116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 14 - 53
Target Start/End: Complemental strand, 3744713 - 3744674
Alignment:
Q  14 attcttataagtcttccttcaaccatgttgtcccatacct 53  Q
    |||||||||||||||||||||||||||  |||||||||||    
T  3744713 attcttataagtcttccttcaaccatgcagtcccatacct 3744674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 56
Target Start/End: Original strand, 10844688 - 10844728
Alignment:
Q  16 tcttataagtcttccttcaaccatgttgtcccatacctgca 56  Q
    ||||||||| |||||||||||||||  ||||||||||||||    
T  10844688 tcttataagccttccttcaaccatgcagtcccatacctgca 10844728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 54
Target Start/End: Complemental strand, 17103156 - 17103116
Alignment:
Q  14 attcttataagtcttccttcaaccatgttgtcccatacctg 54  Q
    |||||||||||||||||||||||||||  ||| ||||||||    
T  17103156 attcttataagtcttccttcaaccatgcagtctcatacctg 17103116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 62
Target Start/End: Complemental strand, 25147611 - 25147563
Alignment:
Q  14 attcttataagtcttccttcaaccatgttgtcccatacctgcacagtct 62  Q
    ||||||||||| |||||||||||||||  ||| ||||||| ||||||||    
T  25147611 attcttataagccttccttcaaccatgcagtctcatacctacacagtct 25147563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 89
Target Start/End: Complemental strand, 33175033 - 33174958
Alignment:
Q  14 attcttataagtcttccttcaaccatgttgtcccatacctgcacagtctcataatccctttcatttcaatgtgatt 89  Q
    ||||||||||| |||||||||||||||| ||||||||||| ||| | ||||  |||||| ||||| | ||||||||    
T  33175033 attcttataagccttccttcaaccatgtagtcccatacctacacggcctcaggatccctctcattccgatgtgatt 33174958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 14 - 64
Target Start/End: Complemental strand, 1707116 - 1707066
Alignment:
Q  14 attcttataagtcttccttcaaccatgttgtcccatacctgcacagtctca 64  Q
    |||||||||||||||||||||| ||||| ||| ||||||| ||||||||||    
T  1707116 attcttataagtcttccttcaatcatgtagtctcatacctacacagtctca 1707066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 98
Target Start/End: Complemental strand, 83092 - 83008
Alignment:
Q  14 attcttataagtcttccttcaaccatgttgtcccatacctgcacagtctcataatccctttcatttcaatgtgatttggttgcct 98  Q
    |||||||||||  | ||||||||||||| ||| |||||||||||| |||||  |||||| ||||||| | ||||||  |||||||    
T  83092 attcttataagcataccttcaaccatgtagtctcatacctgcacaatctcaggatccctctcatttcgacgtgattcagttgcct 83008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 78
Target Start/End: Complemental strand, 8073967 - 8073903
Alignment:
Q  14 attcttataagtcttccttcaaccatgttgtcccatacctgcacagtctcataatccctttcatt 78  Q
    |||||||||||||| ||||||||| | | | |||||||||||||| |||||| |||||| |||||    
T  8073967 attcttataagtctcccttcaaccttatagacccatacctgcacaatctcatgatccctctcatt 8073903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 94
Target Start/End: Complemental strand, 16379468 - 16379388
Alignment:
Q  14 attcttataagtcttccttcaaccatgttgtcccatacctgcacagtctcataatccctttcatttcaatgtgatttggtt 94  Q
    |||| ||||||||||||||||||||||  ||||||||||||||| | |||   |||||| ||||| |||| ||||| ||||    
T  16379468 attcgtataagtcttccttcaaccatgcagtcccatacctgcacggcctcgggatccctctcattccaatttgattcggtt 16379388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 94
Target Start/End: Original strand, 18447989 - 18448069
Alignment:
Q  14 attcttataagtcttccttcaaccatgttgtcccatacctgcacagtctcataatccctttcatttcaatgtgatttggtt 94  Q
    ||||||||||||||| |||||||||||| ||| ||||||| ||| | ||||  |||||| ||||| | |||||||| ||||    
T  18447989 attcttataagtcttacttcaaccatgtagtcacatacctacacggcctcaggatccctatcattccgatgtgattcggtt 18448069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 14 - 53
Target Start/End: Complemental strand, 8256601 - 8256562
Alignment:
Q  14 attcttataagtcttccttcaaccatgttgtcccatacct 53  Q
    ||||||||||| |||||||||||||||| |||||||||||    
T  8256601 attcttataagccttccttcaaccatgtagtcccatacct 8256562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 14 - 57
Target Start/End: Original strand, 25338068 - 25338111
Alignment:
Q  14 attcttataagtcttccttcaaccatgttgtcccatacctgcac 57  Q
    ||||||||||| |||||||||||||||  |||||||||||||||    
T  25338068 attcttataagccttccttcaaccatgcagtcccatacctgcac 25338111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 78
Target Start/End: Original strand, 25434127 - 25434191
Alignment:
Q  14 attcttataagtcttccttcaaccatgttgtcccatacctgcacagtctcataatccctttcatt 78  Q
    ||||||||||| |||||||||||||||  |||||||||| |||| | ||||  |||||| |||||    
T  25434127 attcttataagccttccttcaaccatgaagtcccataccagcacggcctcaggatccctctcatt 25434191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 54
Target Start/End: Complemental strand, 30966309 - 30966269
Alignment:
Q  14 attcttataagtcttccttcaaccatgttgtcccatacctg 54  Q
    ||||||||||| |||||||||||||||  ||||||||||||    
T  30966309 attcttataagccttccttcaaccatgcagtcccatacctg 30966269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0322 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0322
Description:

Target: scaffold0322; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 90
Target Start/End: Complemental strand, 19041 - 18965
Alignment:
Q  14 attcttataagtcttccttcaaccatgttgtcccatacctgcacagtctcataatccctttcatttcaatgtgattt 90  Q
    ||||||||||| |||||||||||||||  ||||||||||||||| | |||   |||||| ||||| | |||||||||    
T  19041 attcttataagccttccttcaaccatgcagtcccatacctgcacggcctctggatccctctcattccgatgtgattt 18965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0088 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0088
Description:

Target: scaffold0088; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 94
Target Start/End: Complemental strand, 23748 - 23668
Alignment:
Q  14 attcttataagtcttccttcaaccatgttgtcccatacctgcacagtctcataatccctttcatttcaatgtgatttggtt 94  Q
    ||||||||||| |||||||||||||||  ||||||||||||||| | ||||  | |||| |||||||  ||||||| ||||    
T  23748 attcttataagccttccttcaaccatgcagtcccatacctgcacggcctcaagaaccctctcatttcggtgtgattcggtt 23668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 94
Target Start/End: Original strand, 25230319 - 25230399
Alignment:
Q  14 attcttataagtcttccttcaaccatgttgtcccatacctgcacagtctcataatccctttcatttcaatgtgatttggtt 94  Q
    ||||||||||| |||||||||||||||| ||||||||||| |||   ||||  |||||| || || | |||||||||||||    
T  25230319 attcttataagccttccttcaaccatgtagtcccatacctacacgacctcaggatccctctccttccgatgtgatttggtt 25230399  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 94
Target Start/End: Original strand, 25230776 - 25230856
Alignment:
Q  14 attcttataagtcttccttcaaccatgttgtcccatacctgcacagtctcataatccctttcatttcaatgtgatttggtt 94  Q
    ||||||||||  |||||||||||||||| ||| ||||||| ||  | ||||  |||||| ||||| |||||||||||||||    
T  25230776 attcttataaaccttccttcaaccatgtagtctcatacctacatggcctcaggatccctctcattccaatgtgatttggtt 25230856  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 94
Target Start/End: Original strand, 25237906 - 25237986
Alignment:
Q  14 attcttataagtcttccttcaaccatgttgtcccatacctgcacagtctcataatccctttcatttcaatgtgatttggtt 94  Q
    ||||||||||| |||||||||||||||| ||||||||||| |||   ||||  |||||| || || | |||||||||||||    
T  25237906 attcttataagccttccttcaaccatgtagtcccatacctacacgacctcaggatccctctccttccgatgtgatttggtt 25237986  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 94
Target Start/End: Original strand, 25238363 - 25238443
Alignment:
Q  14 attcttataagtcttccttcaaccatgttgtcccatacctgcacagtctcataatccctttcatttcaatgtgatttggtt 94  Q
    ||||||||||  |||||||||||||||| ||| ||||||| ||  | ||||  |||||| ||||| |||||||||||||||    
T  25238363 attcttataaaccttccttcaaccatgtagtctcatacctacatggcctcaggatccctctcattccaatgtgatttggtt 25238443  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 14 - 53
Target Start/End: Original strand, 11180105 - 11180144
Alignment:
Q  14 attcttataagtcttccttcaaccatgttgtcccatacct 53  Q
    ||||||||||| |||||||||||||||| |||||||||||    
T  11180105 attcttataagccttccttcaaccatgtagtcccatacct 11180144  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 14 - 53
Target Start/End: Original strand, 13150170 - 13150209
Alignment:
Q  14 attcttataagtcttccttcaaccatgttgtcccatacct 53  Q
    ||||||||||| |||||||||||||||| |||||||||||    
T  13150170 attcttataagccttccttcaaccatgtagtcccatacct 13150209  T

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Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 14 - 53
Target Start/End: Original strand, 20885188 - 20885227
Alignment:
Q  14 attcttataagtcttccttcaaccatgttgtcccatacct 53  Q
    |||||||||||||||||||||||||||| ||| |||||||    
T  20885188 attcttataagtcttccttcaaccatgtagtcacatacct 20885227  T

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Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 14 - 89
Target Start/End: Original strand, 27187401 - 27187476
Alignment:
Q  14 attcttataagtcttccttcaaccatgttgtcccatacctgcacagtctcataatccctttcatttcaatgtgatt 89  Q
    ||||||||||| |||| || |||||||  ||||||||| ||||||| ||||  |||||| ||||| ||||||||||    
T  27187401 attcttataagccttcatttaaccatgcagtcccatacatgcacagcctcaggatccctctcattccaatgtgatt 27187476  T

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Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 14 - 57
Target Start/End: Complemental strand, 28561821 - 28561778
Alignment:
Q  14 attcttataagtcttccttcaaccatgttgtcccatacctgcac 57  Q
    ||||||||||| |||||||||||||||  |||||||||||||||    
T  28561821 attcttataagccttccttcaaccatgcagtcccatacctgcac 28561778  T

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Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 14 - 89
Target Start/End: Complemental strand, 30529762 - 30529687
Alignment:
Q  14 attcttataagtcttccttcaaccatgttgtcccatacctgcacagtctcataatccctttcatttcaatgtgatt 89  Q
    ||||||||||| ||| |||||||||||| ||| ||||||| ||||| ||||  |||||| ||||| | ||||||||    
T  30529762 attcttataagccttacttcaaccatgtagtctcatacctacacagcctcaggatccctctcattccgatgtgatt 30529687  T

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Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 14 - 57
Target Start/End: Original strand, 31284347 - 31284390
Alignment:
Q  14 attcttataagtcttccttcaaccatgttgtcccatacctgcac 57  Q
    ||||||||||| |||||||||||||||  |||||||||||||||    
T  31284347 attcttataagccttccttcaaccatgcagtcccatacctgcac 31284390  T

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Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 14 - 53
Target Start/End: Original strand, 32227292 - 32227331
Alignment:
Q  14 attcttataagtcttccttcaaccatgttgtcccatacct 53  Q
    ||||||||||| |||||||||||||||| |||||||||||    
T  32227292 attcttataagccttccttcaaccatgtagtcccatacct 32227331  T

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Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 14 - 53
Target Start/End: Complemental strand, 32227575 - 32227536
Alignment:
Q  14 attcttataagtcttccttcaaccatgttgtcccatacct 53  Q
    ||||||||||| |||||||||||||||| |||||||||||    
T  32227575 attcttataagccttccttcaaccatgtagtcccatacct 32227536  T

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Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 53
Target Start/End: Complemental strand, 39641010 - 39640973
Alignment:
Q  16 tcttataagtcttccttcaaccatgttgtcccatacct 53  Q
    |||||||||||||||||||||||||| ||| |||||||    
T  39641010 tcttataagtcttccttcaaccatgtagtctcatacct 39640973  T

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Target: scaffold0047 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 14 - 89
Target Start/End: Original strand, 18205 - 18280
Alignment:
Q  14 attcttataagtcttccttcaaccatgttgtcccatacctgcacagtctcataatccctttcatttcaatgtgatt 89  Q
    ||||||||||||||||||||||| |||| ||| ||||||| ||| | ||||  |||||| ||||| | ||||||||    
T  18205 attcttataagtcttccttcaactatgtagtcacatacctacacggcctcaggatccctctcattccgatgtgatt 18280  T

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Target: scaffold0047; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 78
Target Start/End: Original strand, 17669 - 17733
Alignment:
Q  14 attcttataagtcttccttcaaccatgttgtcccatacctgcacagtctcataatccctttcatt 78  Q
    |||||||||||  ||||||||||||||| ||||||||||| ||| | ||||  |||||| |||||    
T  17669 attcttataagctttccttcaaccatgtagtcccatacctacacggcctcaggatccctctcatt 17733  T

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Target: scaffold0002 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 14 - 53
Target Start/End: Complemental strand, 154832 - 154793
Alignment:
Q  14 attcttataagtcttccttcaaccatgttgtcccatacct 53  Q
    ||||||||||| |||||||||||||||| |||||||||||    
T  154832 attcttataagccttccttcaaccatgtagtcccatacct 154793  T

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Target: scaffold0243 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0243
Description:

Target: scaffold0243; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 56
Target Start/End: Complemental strand, 1295 - 1253
Alignment:
Q  14 attcttataagtcttccttcaaccatgttgtcccatacctgca 56  Q
    ||||||||||| |||||||||||||||  ||||||||||||||    
T  1295 attcttataagccttccttcaaccatgcagtcccatacctgca 1253  T

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Target: scaffold0499 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0499
Description:

Target: scaffold0499; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 78
Target Start/End: Original strand, 2122 - 2186
Alignment:
Q  14 attcttataagtcttccttcaaccatgttgtcccatacctgcacagtctcataatccctttcatt 78  Q
    ||||||||||| |||||||||||||||  ||| ||||||||||| | ||||  | ||||||||||    
T  2122 attcttataagccttccttcaaccatgcagtctcatacctgcacggcctcaggaaccctttcatt 2186  T

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Target: scaffold0022 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 54
Target Start/End: Original strand, 162749 - 162789
Alignment:
Q  14 attcttataagtcttccttcaaccatgttgtcccatacctg 54  Q
    |||||||||||||||||||||||||||  ||| ||||||||    
T  162749 attcttataagtcttccttcaaccatgcagtcacatacctg 162789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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