View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21252_high_8 (Length: 335)

Name: NF21252_high_8
Description: NF21252
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21252_high_8
NF21252_high_8
[»] chr2 (1 HSPs)
chr2 (16-307)||(32557502-32557793)


Alignment Details
Target: chr2 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 16 - 307
Target Start/End: Original strand, 32557502 - 32557793
Alignment:
Q  16 ctgcaagccagaaataattaaaatggtaacgcaatacccttggcaagatgatcaataacaaaacagaaaaggataaacccaatcttgaaagagaactaat 115  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32557502 ctgcaagccagaaataattaaaatggtaacgcaatacccctggcaagatgatcaataacaaaacagaaaaggataaacccaatcttgaaagagaactaat 32557601  T
Q  116 actatacccgaataaatactcattctccccccactgcattcaggattcccacgtctctttcctactctctcactccttgcttgccacctattcccttctc 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  32557602 actatacccgaataaatactcattctccccccactgcattcaggattcccacatctctttcctactctctcactccttgcttgccacctattcccttctc 32557701  T
Q  216 ctctcatacacccttaatcttggtttggacccaatttccagacaacccacatccttgtccccttttttacctatccttcagtacacatttct 307  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32557702 ctctcatacacccttaatcttggtttggacccaattcccagacaacccacatccttgtccccttttttacctatccttcagtacacatttct 32557793  T

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