View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21253_low_1 (Length: 489)
Name: NF21253_low_1
Description: NF21253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21253_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 414; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 18 - 455
Target Start/End: Complemental strand, 15306955 - 15306518
Alignment:
| Q |
18 |
actacatggcaccaaaggccactgaatccaacaataatttggaggctagaggcaacaataagcgcaccttgcgttccacgcataatcctcttaaatttct |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15306955 |
actacatggcaccaaaggccactgaatccaacaataatttggaggctagaggcaacaataagcgcaccttgcgttccacgcataatcctcttaaatttct |
15306856 |
T |
|
| Q |
118 |
gcacattgatcacaaatcagatagccagaaaaggctgttgatataccaaaaaagacaaaacaatgaaaaatacaaggtttgtgatgaaccaacctcccga |
217 |
Q |
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| T |
15306855 |
gcacattgatcacaaatcagatagccagaaaaggctgttgatataccaaaaaagacaaaacaatgaaaaatacaaggtttgtgatgaaccaacctcccga |
15306756 |
T |
|
| Q |
218 |
ggatgcataatatcattgtcgtagcgactggccaagatgattgaaatggtagttggcacaaaggtaaaggatcctccaataactgctggtagtcgagtcc |
317 |
Q |
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||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
15306755 |
ggatgcataatgtcatcgtcgtagcgactggccaagatgattgaaatggtagttggcacaaaggtaaaggatcctccgataactgctggtagtcgagtcc |
15306656 |
T |
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| Q |
318 |
caaacaatgtttgtattaatgtgtttataccagccacaaacaaatgattttgaatcagcattgctttttcttcctattgaaacacaaattaagctatttg |
417 |
Q |
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| T |
15306655 |
caaacaatgtttgtattaatgtgtttataccagccacaaacaaatgattttgaatcagcattgctttttcttcctattgaaacacaaattaagctatttg |
15306556 |
T |
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| Q |
418 |
ttaaaagaaaaaacctatataacatcatcaaaaatcaa |
455 |
Q |
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| T |
15306555 |
ttaaaagagaaaaactatataacaccatcaaaaatcaa |
15306518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 248 - 401
Target Start/End: Original strand, 26475051 - 26475204
Alignment:
| Q |
248 |
gccaagatgattgaaatggtagttggcacaaaggtaaaggatcctccaataactgctggtagtcgagtcccaaacaatgtttgtattaatgtgtttatac |
347 |
Q |
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||||| || |||||||| || ||||||||||| || |||||||||||||||| || ||||| ||||| ||||| |||||| | |||||||| || | |
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| T |
26475051 |
gccaaaataattgaaatagttgttggcacaaaagtgtaggatcctccaataaccgcaggtagacgagttccaaatgttgtttggaaaaatgtgttaattc |
26475150 |
T |
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| Q |
348 |
cagccacaaacaaatgattttgaatcagcattgctttttcttcctattgaaaca |
401 |
Q |
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|||||||||| | || | ||||||| ||||||| |||||||||||||||| |
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| T |
26475151 |
cagccacaaatagtagagtctgaatcacttttgctttctcttcctattgaaaca |
26475204 |
T |
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