View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21253_low_2 (Length: 210)
Name: NF21253_low_2
Description: NF21253
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21253_low_2 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 19 - 210
Target Start/End: Complemental strand, 34558735 - 34558543
Alignment:
| Q |
19 |
gaaaagttgacatatttacagggatatttaacccttgaaattttagcttcacatatacctaaagtctggatccaccctt-gatacatagttcgggtgtc- |
116 |
Q |
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| T |
34558735 |
gaaaagttgacatatttatagggatatttaacccttgaaattttagtttcacatatacctaaagtctggatccacccttggatacatagttggggtgtct |
34558636 |
T |
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| Q |
117 |
-ttacaaccaatttgatgcatgtacatattcttgacatacnnnnnnnnggctaacaatggtgaaaactgaaagtgataagaagtcagaagggcat |
210 |
Q |
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| T |
34558635 |
tttacaaccaatttgatgcatgtacatattcttgacatac--aaaaaaggctaacaatggtgaaaactgaaagtgataagaagtcagaagggcat |
34558543 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 53 - 99
Target Start/End: Complemental strand, 24309839 - 24309793
Alignment:
| Q |
53 |
ttgaaattttagcttcacatatacctaaagtctggatccacccttga |
99 |
Q |
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| T |
24309839 |
ttgaaattttagcttcgcatgtacctaaagtctggatccacccttga |
24309793 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 89
Target Start/End: Complemental strand, 8034726 - 8034690
Alignment:
| Q |
53 |
ttgaaattttagcttcacatatacctaaagtctggat |
89 |
Q |
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| T |
8034726 |
ttgaaattttagctccacatgtacctaaagtctggat |
8034690 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 53 - 95
Target Start/End: Original strand, 7607413 - 7607455
Alignment:
| Q |
53 |
ttgaaattttagcttcacatatacctaaagtctggatccaccc |
95 |
Q |
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| T |
7607413 |
ttgaaattttagctccacatgtacctaaagtctggatccaccc |
7607455 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 91
Target Start/End: Complemental strand, 1691578 - 1691540
Alignment:
| Q |
53 |
ttgaaattttagcttcacatatacctaaagtctggatcc |
91 |
Q |
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| T |
1691578 |
ttgaaattttagctccacatatacctaaagtctcgatcc |
1691540 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 91
Target Start/End: Original strand, 33941777 - 33941809
Alignment:
| Q |
59 |
ttttagcttcacatatacctaaagtctggatcc |
91 |
Q |
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| T |
33941777 |
ttttagctccacatatacctaaagtctggatcc |
33941809 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 91
Target Start/End: Complemental strand, 2185174 - 2185136
Alignment:
| Q |
53 |
ttgaaattttagcttcacatatacctaaagtctggatcc |
91 |
Q |
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| T |
2185174 |
ttgaaattttagctccacatatacctaaagtttggatcc |
2185136 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 96
Target Start/End: Complemental strand, 36247787 - 36247747
Alignment:
| Q |
56 |
aaattttagcttcacatatacctaaagtctggatccaccct |
96 |
Q |
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| T |
36247787 |
aaattttagctccacatgtacctaaagtctggatccgccct |
36247747 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 95
Target Start/End: Complemental strand, 41006163 - 41006121
Alignment:
| Q |
53 |
ttgaaattttagcttcacatatacctaaagtctggatccaccc |
95 |
Q |
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| T |
41006163 |
ttgaaattttagctccacatgtacgtaaagtctggatccaccc |
41006121 |
T |
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Target: chr2 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 53 - 90
Target Start/End: Complemental strand, 6141426 - 6141389
Alignment:
| Q |
53 |
ttgaaattttagcttcacatatacctaaagtctggatc |
90 |
Q |
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| T |
6141426 |
ttgaaattttagctccacatgtacctaaagtctggatc |
6141389 |
T |
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