View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21254_high_1 (Length: 644)
Name: NF21254_high_1
Description: NF21254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21254_high_1 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 547; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 547; E-Value: 0
Query Start/End: Original strand, 1 - 627
Target Start/End: Original strand, 180337 - 180963
Alignment:
| Q |
1 |
tctgatgatgatattaccctctttgttctcaatagacttggtgccgaatataatgatatcgctgcctccatttgcacacgccaacacccttttaccttta |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| ||||||||||||||||||||||||| |
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|
| T |
180337 |
tctgatgatgatattaccctctttgttctcaatagacttggtgtcgaatataatgatatcactgcctccattcgcacacgccaacacccttttaccttcg |
180436 |
T |
|
| Q |
101 |
agaagcttcatagccatcttctcgcacatgaggactacctgcgtcgagaagttgttcaggttgacattcaagtacctacagcgaatttcgctcatcacac |
200 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
180437 |
agaagcttcatagccctcttctcgcacatgaggactacatgcgtcgagaagctgttcaggttgacattcaagtacctacagcgaatttcgctcatcacac |
180536 |
T |
|
| Q |
201 |
ctctccaaatcaacgcagctcaaaagatgattgtatccttccaattccatcctcggggcgtggtaacaatttctctaaacaatctcagtaccatggatcc |
300 |
Q |
| |
|
||||||||||||||||||||| ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
180537 |
ctctccaaatcaacgcagctcgaaagatgatggtatccttccaattccatccccggggcgtggtaacaatttctctaaacaatctcagtaccatggatcc |
180636 |
T |
|
| Q |
301 |
actactcgtgggtctaactatcttggtagaggtcgaggtttcaactcatgtggaaatagacctccaccaagatgtcaactctgctctttccttggccata |
400 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
180637 |
actactcgtgggtctaactatcgtggtagaggtcgaggtttcaactcatgtggaaatagacttccaccaagatgtcaactctgctctttccttggccata |
180736 |
T |
|
| Q |
401 |
ttgctaagtaatgtcctccgctgcggcaccgcaacaatcaaccaatggtaaatttcgcttctgcttcacattcggctgctcctaactgggtgtttgacac |
500 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| ||||| |
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|
| T |
180737 |
ttgctaagtaatgtcctccgctgcggcaacgcaacaatcaaccaatggcaaatttcgcttctacttcacattcggctgctcctaactgggtgttcgacac |
180836 |
T |
|
| Q |
501 |
tggagccagtcatcgtataacatcaaatctgaacaatatgcagcttcactccgaatatgatggtcccgaagaagttcagattggtgatggtacaggtttg |
600 |
Q |
| |
|
| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
180837 |
tagagccagtcatcatataacatcaaatctgaacaatatgcagcttcactccgaatatgatggtcccgaagaagttcagattggtgatggtacaggtttg |
180936 |
T |
|
| Q |
601 |
aaaatttcacatgttggctctattacc |
627 |
Q |
| |
|
|| |||||||||||||||||||||||| |
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|
| T |
180937 |
aatatttcacatgttggctctattacc |
180963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 499; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 499; E-Value: 0
Query Start/End: Original strand, 1 - 627
Target Start/End: Original strand, 1700764 - 1701390
Alignment:
| Q |
1 |
tctgatgatgatattaccctctttgttctcaatagacttggtgccgaatataatgatatcgctgcctccatttgcacacgccaacacccttttaccttta |
100 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
1700764 |
tctgatgatgatattaccctatttgttctcaatggacttggtgccgaatataatgatattgctgcctccattcgcacacgccaacacccttttacctttg |
1700863 |
T |
|
| Q |
101 |
agaagcttcatagccatcttctcgcacatgaggactacctgcgtcgagaagttgttcaggttgacattcaagtacctacagcgaatttcgctcatcacac |
200 |
Q |
| |
|
|| |||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1700864 |
aggagcttcatagccatcttctcgcacatgatgactacctgcgtcgagaagctgttcaggttgacattcaagtacctacagcgaatttcgctcatcacac |
1700963 |
T |
|
| Q |
201 |
ctctccaaatcaacgcagctcaaaagatgattgtatccttccaattccatcctcggggcgtggtaacaatttctctaaacaatctcagtaccatggatcc |
300 |
Q |
| |
|
|||||||||||||||||||||||| |||||| |||||||||||||||||||| | || |||||||||||||||||||||||||| ||| ||||||||||| |
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|
| T |
1700964 |
ctctccaaatcaacgcagctcaaaggatgatggtatccttccaattccatccacaggacgtggtaacaatttctctaaacaatcccagcaccatggatcc |
1701063 |
T |
|
| Q |
301 |
actactcgtgggtctaactatcttggtagaggtcgaggtttcaactcatgtggaaatagacctccaccaagatgtcaactctgctctttccttggccata |
400 |
Q |
| |
|
| |||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
1701064 |
aatactcgtgggtctaactatcgtggtagaggtcgaggtttcaactcacgtggaaatagacctccaccaagatgtcaactctgctctttgcttggccata |
1701163 |
T |
|
| Q |
401 |
ttgctaagtaatgtcctccgctgcggcaccgcaacaatcaaccaatggtaaatttcgcttctgcttcacattcggctgctcctaactgggtgtttgacac |
500 |
Q |
| |
|
|||||||||| ||||||| ||||| || ||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
1701164 |
ttgctaagtattgtcctcagctgctacaacgcaacaatcaaccagtggcaaatttcgcttctgcttcacattcggctgctcctaactgggtgttcgacac |
1701263 |
T |
|
| Q |
501 |
tggagccagtcatcgtataacatcaaatctgaacaatatgcagcttcactccgaatatgatggtcccgaagaagttcagattggtgatggtacaggtttg |
600 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
1701264 |
aggagccagtcatcatataacatcaaatctgaacaatatgcagctgcactccgaatatgacggtccagaagaagttcagattggtgatggtacaggtttg |
1701363 |
T |
|
| Q |
601 |
aaaatttcacatgttggctctattacc |
627 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
1701364 |
aaaatttcacatgttggctctattacc |
1701390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 67; Significance: 2e-29; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 479 - 617
Target Start/End: Complemental strand, 26593191 - 26593053
Alignment:
| Q |
479 |
ctcctaactgggtgtttgacactggagccagtcatcgtataacatcaaatctgaacaatatgcagcttcactccgaatatgatggtcccgaagaagttca |
578 |
Q |
| |
|
||||||| ||||||||||| ||||| ||||| |||| ||| | |||||||||| |||||||| ||||||| ||||||||||| || |||||||| || |
|
|
| T |
26593191 |
ctcctaattgggtgtttgatactggggccagccatcatatcagcacaaatctgaataatatgcacattcactctgaatatgatggcccagaagaagtgca |
26593092 |
T |
|
| Q |
579 |
gattggtgatggtacaggtttgaaaatttcacatgttgg |
617 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
26593091 |
aattggtgatggtacaggtttgaaaatttcccatgttgg |
26593053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 60; Significance: 3e-25; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 479 - 622
Target Start/End: Original strand, 5399981 - 5400124
Alignment:
| Q |
479 |
ctcctaactgggtgtttgacactggagccagtcatcgtataacatcaaatctgaacaatatgcagcttcactccgaatatgatggtcccgaagaagttca |
578 |
Q |
| |
|
|||||||||||||||||||||||||||| || |||| | | | | |||||||||||||| | || || ||||||||||||||||| |||||||| |
|
|
| T |
5399981 |
ctcctaactgggtgtttgacactggagctagccatcatgttgccaacagcctgaacaatatgcacatccattcagaatatgatggtcccgaggaagttca |
5400080 |
T |
|
| Q |
579 |
gattggtgatggtacaggtttgaaaatttcacatgttggctcta |
622 |
Q |
| |
|
|||||||||||||||||||| |||||||| ||||||||||||| |
|
|
| T |
5400081 |
aattggtgatggtacaggtttaaaaatttctcatgttggctcta |
5400124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 56; Significance: 7e-23; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 479 - 622
Target Start/End: Original strand, 3540978 - 3541121
Alignment:
| Q |
479 |
ctcctaactgggtgtttgacactggagccagtcatcgtataacatcaaatctgaacaatatgcagcttcactccgaatatgatggtcccgaagaagttca |
578 |
Q |
| |
|
|||||||||||||||||||||||||||| || |||| | | | | |||||||||||||| | || || |||||||||||||| || |||||||| |
|
|
| T |
3540978 |
ctcctaactgggtgtttgacactggagctagccatcatgttgccaacagcctgaacaatatgcacatccattcagaatatgatggtccagaggaagttca |
3541077 |
T |
|
| Q |
579 |
gattggtgatggtacaggtttgaaaatttcacatgttggctcta |
622 |
Q |
| |
|
|||||||||||||||||||| |||||||| ||||||||||||| |
|
|
| T |
3541078 |
aattggtgatggtacaggtttaaaaatttctcatgttggctcta |
3541121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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