View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21254_high_3 (Length: 364)
Name: NF21254_high_3
Description: NF21254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21254_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 107; Significance: 1e-53; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 7499827 - 7499702
Alignment:
| Q |
1 |
ttcaataacagttcttaagtttctgtggctctgaagtctgatctaattgtttatatatggcactatctgttaatacatggctggctttagaatgatgtct |
100 |
Q |
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| T |
7499827 |
ttcaataacagttctaaagtttctgtggctctgaagtctgatctaattgtttatatatg-cactatctgttaatacatggctggttttagaatgatgtct |
7499729 |
T |
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| Q |
101 |
cagttttttatgtttcttgatcatgaa |
127 |
Q |
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| T |
7499728 |
cagttttttatgtttctagatcatgaa |
7499702 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 126 - 345
Target Start/End: Complemental strand, 7488416 - 7488194
Alignment:
| Q |
126 |
aacatgtctgatagccatagtctcatgattctttataaaacaataccctatgtaacccttctctcatgtgacaacgtaacacacatcaaacccttctttt |
225 |
Q |
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| T |
7488416 |
aacatgtctgatagtcctaatctcatgatccttcatgaaacaaaaccctatgtaactcttctctcatgtcacaccgtaatacacatcaaatccctctttt |
7488317 |
T |
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| Q |
226 |
ccaacaacgtctttcatcct---ataagaatagaatcctatggtagttgcaacggtgttttctgtcttaaacgtttgtgtcggttccataaaagttgtct |
322 |
Q |
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| T |
7488316 |
ccaacagcaattgtcgcacttttataagaatggaatcatatggtagttgcaatggcgttttctgtctccaaggtttgtgttggtttcataagagttgtct |
7488217 |
T |
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| Q |
323 |
cgatgagttaattatgtggaacc |
345 |
Q |
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| T |
7488216 |
tgatgagttaattatgtggaacc |
7488194 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 170 - 302
Target Start/End: Complemental strand, 7475532 - 7475400
Alignment:
| Q |
170 |
accctatgtaacccttctctcatgtgacaacgtaacacacatcaaacccttcttttccaacaacgtctttcatcctataagaatagaatcctatggtagt |
269 |
Q |
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| T |
7475532 |
accctatataacccttctctcacgtgacaacctaatgcacatcaaatcccccttttccagcaactcccatcaacctataacaattgaatcatatggtagt |
7475433 |
T |
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| Q |
270 |
tgcaacggtgttttctgtcttaaacgtttgtgt |
302 |
Q |
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| T |
7475432 |
ttcaatggtgttttctgtctcaaaggtttgtgt |
7475400 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 174 - 232
Target Start/End: Original strand, 6943675 - 6943733
Alignment:
| Q |
174 |
tatgtaacccttctctcatgtgacaacgtaacacacatcaaacccttcttttccaacaa |
232 |
Q |
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| T |
6943675 |
tatgtaacccttctctcatgtgacaacctaatacacatcaaatcccccttttccaacaa |
6943733 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 107
Target Start/End: Original strand, 8139040 - 8139134
Alignment:
| Q |
6 |
taacagttcttaagtttctgtggctctgaagtctgatctaattgttt-atatatggcactatctgttaatacatggctggctttagaatgatgtctcagt |
104 |
Q |
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| T |
8139040 |
taacagttctaaagtttctgtggctctca-------tctaattgttttatgtatg-cactatcagttaatacatggctgactttggaattatgtctcagt |
8139131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 94 - 124
Target Start/End: Original strand, 8139168 - 8139198
Alignment:
| Q |
94 |
gatgtctcagttttttatgtttcttgatcat |
124 |
Q |
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| T |
8139168 |
gatgtctcagttttttatgtttcttgatcat |
8139198 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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