View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21254_high_6 (Length: 284)

Name: NF21254_high_6
Description: NF21254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21254_high_6
NF21254_high_6
[»] chr1 (8 HSPs)
chr1 (1-264)||(40036017-40036284)
chr1 (146-264)||(7892189-7892307)
chr1 (147-261)||(38139036-38139148)
chr1 (23-87)||(50911577-50911641)
chr1 (148-257)||(43043985-43044094)
chr1 (28-129)||(7892043-7892144)
chr1 (148-189)||(43067897-43067938)
chr1 (148-189)||(43082897-43082938)
[»] chr4 (3 HSPs)
chr4 (145-219)||(19965639-19965713)
chr4 (58-117)||(19965551-19965610)
chr4 (147-188)||(4230525-4230566)
[»] chr8 (2 HSPs)
chr8 (58-129)||(4788507-4788578)
chr8 (49-129)||(4296617-4296697)


Alignment Details
Target: chr1 (Bit Score: 235; Significance: 1e-130; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 264
Target Start/End: Original strand, 40036017 - 40036284
Alignment:
Q  1 gcaggaggcagtaagtcaaagaaagggattgaagaagtgaattttgatggattatcaatctaggcaagtctattgtcgttattacataaaatggactttg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  40036017 gcaggaggcagtaagtcaaagaaagggattgaagaagtgaattttgacggattatcaatctaggcaagtctattgtcgttattacacaaaatggactttg 40036116  T
Q  101 atccgaagtatgtctatttctggtctagtctagtaaacttactctgcagcttttgttcccagaactgactt----ctagatcgacggtggcaggaccgtt 196  Q
    |||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||    |||||||||||||||||||||||||    
T  40036117 atccgaagtatgtctatttctggtctagtctagtaaacttacttcgcagcttttgttcccagaactgacttctagctagatcgacggtggcaggaccgtt 40036216  T
Q  197 tcttttttgtttgtatgctatgaatattatgtctagtgtgaatacttggattatctaagcagcaagtt 264  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40036217 tcttttttgtttgtatgctatgaatattatgtctagtgtgaatacttggattatctaagcagcaagtt 40036284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 146 - 264
Target Start/End: Original strand, 7892189 - 7892307
Alignment:
Q  146 gcagcttttgttcccagaactgacttctagatcgacggtggcaggaccgtttcttttttgtttgtatgctatgaatattatgtctagtgtgaatacttgg 245  Q
    |||||||||||||| ||||||| ||||||||||| |||||||||| || |||||||||||||| |||||||||| |||| ||||||||||||||||||||    
T  7892189 gcagcttttgttcctagaactggcttctagatcggcggtggcaggtccatttcttttttgtttttatgctatgattattgtgtctagtgtgaatacttgg 7892288  T
Q  246 attatctaagcagcaagtt 264  Q
    ||| | ||||||| |||||    
T  7892289 attttgtaagcagaaagtt 7892307  T

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Target: chr1; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 147 - 261
Target Start/End: Original strand, 38139036 - 38139148
Alignment:
Q  147 cagcttttgttcccagaactgacttctagatcgacggtggcaggaccgtttcttttttgtttgtatgctatgaatattatgtctagtgtgaatacttgga 246  Q
    ||||||||||||| ||||||| ||||||||| || ||||||||| |||||||||||| |||| |||||||||| || | ||||| |||||||||||| ||    
T  38139036 cagcttttgttccaagaactggcttctagattgatggtggcagg-ccgtttctttttcgtttttatgctatgattactgtgtcttgtgtgaatactt-ga 38139133  T
Q  247 ttatctaagcagcaa 261  Q
    || | ||||||||||    
T  38139134 ttttgtaagcagcaa 38139148  T

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Target: chr1; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 23 - 87
Target Start/End: Complemental strand, 50911641 - 50911577
Alignment:
Q  23 aagggattgaagaagtgaattttgatggattatcaatctaggcaagtctattgtcgttattacat 87  Q
    |||| ||||||||||||||||||| ||||||||| ||||||| ||||||||||||||||||||||    
T  50911641 aaggtattgaagaagtgaattttgctggattatctatctagggaagtctattgtcgttattacat 50911577  T

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Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 148 - 257
Target Start/End: Complemental strand, 43044094 - 43043985
Alignment:
Q  148 agcttttgttcccagaactgacttctagatcgacggtggcaggaccgtttcttttttgtttgtatgctatgaatattatgtctagtgtgaatacttggat 247  Q
    ||||| ||||| ||||||||  |||||||||||||||||||| ||  | ||| |||||||| |||||| | | | || |||||||| |||| ||||||||    
T  43044094 agcttgtgttctcagaactgggttctagatcgacggtggcagtactatatctgttttgtttttatgctttaattgttgtgtctagtctgaacacttggat 43043995  T
Q  248 tatctaagca 257  Q
    | | ||||||    
T  43043994 tttgtaagca 43043985  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 129
Target Start/End: Original strand, 7892043 - 7892144
Alignment:
Q  28 attgaagaagtgaattttgatggattatcaatctaggcaagtctattgtcgttattacataaaatggactttgatccgaagtatgtctatttctggtcta 127  Q
    |||||| |||||||| |||   ||| ||| ||||||| |||||||||||| ||||||||  |||||| | |||||||  || |||||||||| | |||||    
T  7892043 attgaaaaagtgaatcttgcaagatgatctatctagggaagtctattgtctttattacaataaatggtccttgatccataggatgtctatttgtcgtcta 7892142  T
Q  128 gt 129  Q
    ||    
T  7892143 gt 7892144  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 189
Target Start/End: Original strand, 43067897 - 43067938
Alignment:
Q  148 agcttttgttcccagaactgacttctagatcgacggtggcag 189  Q
    ||||||||||| ||||||||  ||||||||||||||||||||    
T  43067897 agcttttgttctcagaactgggttctagatcgacggtggcag 43067938  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 189
Target Start/End: Complemental strand, 43082938 - 43082897
Alignment:
Q  148 agcttttgttcccagaactgacttctagatcgacggtggcag 189  Q
    ||||||||||| ||||||||  ||||||||||||||||||||    
T  43082938 agcttttgttctcagaactgggttctagatcgacggtggcag 43082897  T

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Target: chr4 (Bit Score: 47; Significance: 7e-18; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 145 - 219
Target Start/End: Original strand, 19965639 - 19965713
Alignment:
Q  145 tgcagcttttgttcccagaactgacttctagatcgacggtggcaggaccgtttcttttttgtttgtatgctatga 219  Q
    ||||||||| ||||||||||||| ||||||||||||| |||||||| || ||||||||| |||| ||||||||||    
T  19965639 tgcagctttcgttcccagaactggcttctagatcgacagtggcagggccatttctttttggtttttatgctatga 19965713  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 58 - 117
Target Start/End: Original strand, 19965551 - 19965610
Alignment:
Q  58 atctaggcaagtctattgtcgttattacataaaatggactttgatccgaagtatgtctat 117  Q
    ||||||| |||||||||||||||||||||  ||||||  ||||||||| |||||||||||    
T  19965551 atctaggaaagtctattgtcgttattacaataaatggtatttgatccgcagtatgtctat 19965610  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 147 - 188
Target Start/End: Complemental strand, 4230566 - 4230525
Alignment:
Q  147 cagcttttgttcccagaactgacttctagatcgacggtggca 188  Q
    |||||||||||||||||||||  |||||||||||||||||||    
T  4230566 cagcttttgttcccagaactgggttctagatcgacggtggca 4230525  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 58 - 129
Target Start/End: Original strand, 4788507 - 4788578
Alignment:
Q  58 atctaggcaagtctattgtcgttattacataaaatggactttgatccgaagtatgtctatttctggtctagt 129  Q
    ||||||| ||||||||||||| |||||||  |||||| |||| ||||| ||||||||||||||| |||||||    
T  4788507 atctagggaagtctattgtcgctattacaataaatggtctttcatccgtagtatgtctatttctcgtctagt 4788578  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 49 - 129
Target Start/End: Complemental strand, 4296697 - 4296617
Alignment:
Q  49 ggattatcaatctaggcaagtctattgtcgttattacataaaatggactttgatccgaagtatgtctatttctggtctagt 129  Q
    |||| ||| ||||||| |||||||||||||||||| ||  |||||| |||| ||| | ||||||||||||||| |||||||    
T  4296697 ggatgatctatctagggaagtctattgtcgttattgcaataaatggtctttcatctgtagtatgtctatttctcgtctagt 4296617  T

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