View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21254_high_7 (Length: 271)
Name: NF21254_high_7
Description: NF21254
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21254_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 11 - 259
Target Start/End: Complemental strand, 1754484 - 1754234
Alignment:
| Q |
11 |
cacagagaaaggagtgaagcaagtagtagaaaaatgcacacgcctgaaagagataagtttgtgacattatgtcaatgtg-ccgttgatgttgatttatgg |
109 |
Q |
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| T |
1754484 |
cacagagaaaggagtgaagcaagtagtagaaaaatgcacacgcctgaaagagataagtttgcgacattatgtcaatgtggccgttgatgttgatttatgg |
1754385 |
T |
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| Q |
110 |
aatgtgatggtattgtcaaggccattgttgagaaagatcaagactccccctggtttttatcctagtgatagcaagtggaaacccttattgaatcatgggt |
209 |
Q |
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| T |
1754384 |
aatgtgatggtattgtcaaggccattgttgagaaagatcaagactccccctggtttttatcctagtgatagcaagtggaaacccttattgaatcatgggt |
1754285 |
T |
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| Q |
210 |
gctttctttgttagcattttg-aaagtactaaagcaattatatgtaatttt |
259 |
Q |
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| T |
1754284 |
gctttctttgttagcattttgaaaagtactaaagcaattatatgtaatttt |
1754234 |
T |
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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 73
Target Start/End: Complemental strand, 52082546 - 52082484
Alignment:
| Q |
11 |
cacagagaaaggagtgaagcaagtagtagaaaaatgcacacgcctgaaagagataagtttgtg |
73 |
Q |
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| T |
52082546 |
cacagagaaaggagtcgggcacgtagtagaaaactgcacacgactgagagagataaatttgtg |
52082484 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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